Guide to the Human Genome
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Name: CALHM3 Sequence: fasta or formatted (344aa) NCBI GI: 193211395
Description:

calcium homeostasis modulator 3

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         31           2
 C cysteine            4.4         15           2
 D aspartate           4.7         16           1
 E glutamate           4.1         14           2
 F phenylalanine       5.2         18           2
 G glycine             5.5         19           3
 H histidine           2.6          9           1
 I isoleucine          2.3          8           2
 K lysine              3.2         11           1
 L leucine            15.4         53           3
 M methionine          2.0          7           1
 N asparagine          2.0          7           1
 P proline             5.5         19           2
 Q glutamine           3.8         13           1
 R arginine            8.4         29           2
 S serine              8.7         30           3
 T threonine           2.9         10           1
 V valine              6.4         22           2
 W tryptophan          1.5          5           1
 Y tyrosine            2.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium homeostasis modulator 3 
CALHM1                0.422   calcium homeostasis modulator 1 
CALHM2                0.156   calcium homeostasis modulator 2 
FAM26F                0.114   hypothetical protein LOC441168 
FAM26E                0.092   hypothetical protein LOC254228 
FAM26D                0.027   hypothetical protein LOC221301 
UBR3                  0.009   E3 ubiquitin-protein ligase UBR3 
C14orf68              0.009   chromosome 14 open reading frame 68 
SLC44A3               0.007   solute carrier family 44, member 3 isoform 1 
SHANK1                0.007   SH3 and multiple ankyrin repeat domains 1 
SLC44A3               0.007   solute carrier family 44, member 3 isoform 2 
TMEM52                0.004   transmembrane protein 52 
B3GNT9                0.004   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltra...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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