Guide to the Human Genome
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Name: HEATR5B Sequence: fasta or formatted (2071aa) NCBI GI: 55749742
Description:

HEAT repeat containing 5B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1        230           3
 C cysteine            2.3         47           1
 D aspartate           4.2         86           6
 E glutamate           5.6        116           2
 F phenylalanine       2.7         56           2
 G glycine             5.5        113           2
 H histidine           2.8         57           1
 I isoleucine          4.2         88           2
 K lysine              4.7         98           2
 L leucine            13.7        283           3
 M methionine          2.6         54           2
 N asparagine          3.1         64           2
 P proline             4.4         91           3
 Q glutamine           4.1         84           2
 R arginine            4.6         96           2
 S serine              8.8        183           3
 T threonine           5.8        121           3
 V valine              7.3        152           2
 W tryptophan          1.0         20           1
 Y tyrosine            1.5         32           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HEAT repeat containing 5B 
HEATR5A               0.482   HEAT repeat containing 5A 
TTN                   0.002   titin isoform N2-A 
TTN                   0.002   titin isoform novex-2 
TTN                   0.002   titin isoform novex-1 
TTN                   0.002   titin isoform N2-B 
HEATR6                0.002   HEAT repeat containing 6 
VCAN                  0.002   versican isoform 1 
MAP3K9                0.002   mitogen-activated protein kinase kinase kinase 9 [Ho...
MMS19                 0.002   MMS19 nucleotide excision repair homolog 
CHST4                 0.002   carbohydrate (N-acetylglucosamine 6-O) sulfotransfera...
GCN1L1                0.002   GCN1 general control of amino-acid synthesis 1-like ...
TLN1                  0.002   talin 1 
CKAP5                 0.002   colonic and hepatic tumor over-expressed protein iso...
CKAP5                 0.002   colonic and hepatic tumor over-expressed protein iso...
ELFN1                 0.002   extracellular leucine-rich repeat and fibronectin t...
C3orf72               0.002   chromosome 3 open reading frame 72 
PRDM10                0.002   PR domain containing 10 isoform 2 
PRDM10                0.002   PR domain containing 10 isoform 4 
PRDM10                0.002   PR domain containing 10 isoform 1 
PRDM10                0.002   PR domain containing 10 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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