Guide to the Human Genome
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Search of human proteins with 23110970

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|23110970 light ear protein isoform b [Homo sapiens]
         (703 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|23110970 light ear protein isoform b [Homo sapiens]               1422   0.0  
gi|23110966 light ear protein isoform a [Homo sapiens]               1405   0.0  
gi|169214926 PREDICTED: similar to IQ motif and SEC7 domain-cont...    37   0.048
gi|113428915 PREDICTED: similar to IQ motif and SEC7 domain-cont...    37   0.048
gi|190358543 hypothetical protein LOC57654 [Homo sapiens]              37   0.048
gi|169217823 PREDICTED: similar to IQ motif and SEC7 domain-cont...    37   0.082
gi|113431383 PREDICTED: hypothetical protein [Homo sapiens]            37   0.082
gi|239744532 PREDICTED: hypothetical protein XP_002343185 [Homo ...    37   0.082
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s...    37   0.082
gi|239748340 PREDICTED: hypothetical protein XP_002346633 [Homo ...    36   0.14 
gi|210032580 SET domain containing 1B [Homo sapiens]                   36   0.14 
gi|27436984 potassium voltage-gated channel, Shal-related subfam...    35   0.18 
gi|27436986 potassium voltage-gated channel, Shal-related subfam...    35   0.18 
gi|54860079 nadrin isoform 1 [Homo sapiens]                            35   0.24 
gi|54860105 nadrin isoform 2 [Homo sapiens]                            35   0.24 
gi|19882241 immunoglobulin superfamily, DCC subclass, member 4 [...    35   0.31 
gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]            34   0.53 
gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens]        34   0.53 
gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens]        34   0.53 
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]              33   0.69 
gi|150170729 microtubule associated serine/threonine kinase 3 [H...    33   0.69 
gi|4503615 even-skipped homeobox 1 [Homo sapiens]                      33   0.69 
gi|83367077 mucin 16 [Homo sapiens]                                    33   0.90 
gi|62000702 diacylglycerol kinase kappa [Homo sapiens]                 33   0.90 
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap...    33   1.2  
gi|169166894 PREDICTED: hypothetical protein [Homo sapiens]            33   1.2  
gi|169166324 PREDICTED: hypothetical protein [Homo sapiens]            33   1.2  
gi|55953110 retinoblastoma protein-binding zinc finger protein i...    33   1.2  
gi|20336260 retinoblastoma protein-binding zinc finger protein i...    33   1.2  
gi|20336258 retinoblastoma protein-binding zinc finger protein i...    33   1.2  

>gi|23110970 light ear protein isoform b [Homo sapiens]
          Length = 703

 Score = 1422 bits (3681), Expect = 0.0
 Identities = 703/703 (100%), Positives = 703/703 (100%)

Query: 1   MAPLCSLARWNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGVVRCVS 60
           MAPLCSLARWNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGVVRCVS
Sbjct: 1   MAPLCSLARWNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGVVRCVS 60

Query: 61  DISDSPPTLVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKRFLDQLVGFFNFYNGPVSL 120
           DISDSPPTLVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKRFLDQLVGFFNFYNGPVSL
Sbjct: 61  DISDSPPTLVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKRFLDQLVGFFNFYNGPVSL 120

Query: 121 AYENCSQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARILQTCQR 180
           AYENCSQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARILQTCQR
Sbjct: 121 AYENCSQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARILQTCQR 180

Query: 181 SPHILAGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALPPNVQI 240
           SPHILAGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALPPNVQI
Sbjct: 181 SPHILAGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALPPNVQI 240

Query: 241 IPVFVTKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGHVESMA 300
           IPVFVTKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGHVESMA
Sbjct: 241 IPVFVTKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGHVESMA 300

Query: 301 WTTPDPTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKELVFLQE 360
           WTTPDPTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKELVFLQE
Sbjct: 301 WTTPDPTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKELVFLQE 360

Query: 361 ELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSL 420
           ELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSL
Sbjct: 361 ELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSL 420

Query: 421 RPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRGNKLPT 480
           RPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRGNKLPT
Sbjct: 421 RPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRGNKLPT 480

Query: 481 GEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVRMNLYT 540
           GEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVRMNLYT
Sbjct: 481 GEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVRMNLYT 540

Query: 541 HCVKGLVLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSSTYNFT 600
           HCVKGLVLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSSTYNFT
Sbjct: 541 HCVKGLVLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSSTYNFT 600

Query: 601 HYDRIQSLLMANLPQVATPQDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYACCNPI 660
           HYDRIQSLLMANLPQVATPQDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYACCNPI
Sbjct: 601 HYDRIQSLLMANLPQVATPQDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYACCNPI 660

Query: 661 QETYFQQLAPAARSSGFPNPQDGAFSLSGKAKQKLLKHGVNLL 703
           QETYFQQLAPAARSSGFPNPQDGAFSLSGKAKQKLLKHGVNLL
Sbjct: 661 QETYFQQLAPAARSSGFPNPQDGAFSLSGKAKQKLLKHGVNLL 703


>gi|23110966 light ear protein isoform a [Homo sapiens]
          Length = 708

 Score = 1405 bits (3636), Expect = 0.0
 Identities = 695/698 (99%), Positives = 696/698 (99%)

Query: 6   SLARWNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGVVRCVSDISDS 65
           S + WNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGVVRCVSDISDS
Sbjct: 11  SASWWNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGVVRCVSDISDS 70

Query: 66  PPTLVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKRFLDQLVGFFNFYNGPVSLAYENC 125
           PPTLVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKRFLDQLVGFFNFYNGPVSLAYENC
Sbjct: 71  PPTLVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKRFLDQLVGFFNFYNGPVSLAYENC 130

Query: 126 SQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARILQTCQRSPHIL 185
           SQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARILQTCQRSPHIL
Sbjct: 131 SQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARILQTCQRSPHIL 190

Query: 186 AGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALPPNVQIIPVFV 245
           AGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALPPNVQIIPVFV
Sbjct: 191 AGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALPPNVQIIPVFV 250

Query: 246 TKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGHVESMAWTTPD 305
           TKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGHVESMAWTTPD
Sbjct: 251 TKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGHVESMAWTTPD 310

Query: 306 PTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKELVFLQEELDLS 365
           PTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKELVFLQEELDLS
Sbjct: 311 PTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKELVFLQEELDLS 370

Query: 366 EIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSA 425
           EIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSA
Sbjct: 371 EIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSA 430

Query: 426 PEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRGNKLPTGEQGL 485
           PEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRGNKLPTGEQGL
Sbjct: 431 PEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRGNKLPTGEQGL 490

Query: 486 DEDVDGVCESHAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVRMNLYTHCVKG 545
           DEDVDGVCESHAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVRMNLYTHCVKG
Sbjct: 491 DEDVDGVCESHAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVRMNLYTHCVKG 550

Query: 546 LVLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSSTYNFTHYDRI 605
           LVLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSSTYNFTHYDRI
Sbjct: 551 LVLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSSTYNFTHYDRI 610

Query: 606 QSLLMANLPQVATPQDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYACCNPIQETYF 665
           QSLLMANLPQVATPQDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYACCNPIQETYF
Sbjct: 611 QSLLMANLPQVATPQDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYACCNPIQETYF 670

Query: 666 QQLAPAARSSGFPNPQDGAFSLSGKAKQKLLKHGVNLL 703
           QQLAPAARSSGFPNPQDGAFSLSGKAKQKLLKHGVNLL
Sbjct: 671 QQLAPAARSSGFPNPQDGAFSLSGKAKQKLLKHGVNLL 708


>gi|169214926 PREDICTED: similar to IQ motif and SEC7
           domain-containing protein 3 [Homo sapiens]
          Length = 185

 Score = 37.4 bits (85), Expect = 0.048
 Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 6/116 (5%)

Query: 408 EPTP---PEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPL 464
           +P P   P  +A     P +AP    +  AQE L+D    S+ AP P  D  PR+    L
Sbjct: 63  QPPPGLVPPSSAPLPAAPATAPAAAAR--AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQL 120

Query: 465 L-LPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADG 519
           L  P+  PG R +   + ++ L        +    P   C++  A  Q   PSA G
Sbjct: 121 LEQPQRGPGSRAHTPQSPQKHLGTQGAVTDKEKERPPSCCAAAGALLQHKSPSALG 176


>gi|113428915 PREDICTED: similar to IQ motif and SEC7
           domain-containing protein 3 [Homo sapiens]
          Length = 185

 Score = 37.4 bits (85), Expect = 0.048
 Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 6/116 (5%)

Query: 408 EPTP---PEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPL 464
           +P P   P  +A     P +AP    +  AQE L+D    S+ AP P  D  PR+    L
Sbjct: 63  QPPPGLVPPSSAPLPAAPATAPAAAAR--AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQL 120

Query: 465 L-LPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADG 519
           L  P+  PG R +   + ++ L        +    P   C++  A  Q   PSA G
Sbjct: 121 LEQPQRGPGSRAHTPQSPQKHLGTQGAVTDKEKERPPSCCAAAGALLQHKSPSALG 176


>gi|190358543 hypothetical protein LOC57654 [Homo sapiens]
          Length = 709

 Score = 37.4 bits (85), Expect = 0.048
 Identities = 36/124 (29%), Positives = 48/124 (38%), Gaps = 25/124 (20%)

Query: 384 FLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSLR-----------PPSAPEMLTQH 432
           F+ VP  +G  P+    L     LE  P +DT +  LR           P SA   L   
Sbjct: 408 FVEVPEKEGYEPHIPDHLRPEYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQL--- 464

Query: 433 GAQEQLEDHPGHSSQAPIPRADPLPR--------RTRRPLLLPRLDPGQRGNKLPTGEQG 484
               QL DH    S A   RA P P+        R R P++   +D    G +LPT  + 
Sbjct: 465 ---RQLRDHLPPPSSASPSRALPEPQEAQKLAAERARAPVVPYGVDLHYWGQELPTAGKI 521

Query: 485 LDED 488
           +  D
Sbjct: 522 VKSD 525


>gi|169217823 PREDICTED: similar to IQ motif and SEC7
           domain-containing protein 3 [Homo sapiens]
          Length = 185

 Score = 36.6 bits (83), Expect = 0.082
 Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 408 EPTP---PEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPL 464
           +P P   P  +A     P +AP    +  AQE L+D    S+ AP P  D  PR+    L
Sbjct: 63  QPPPGLVPPSSAPLPAAPATAPAAAAR--AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQL 120

Query: 465 L-LPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADG 519
           L  P+  PG R +   +  + L        +    P   C++  A  Q   PSA G
Sbjct: 121 LEQPQRGPGSRAHTPQSPHKHLGTQGAVTDKEKERPPSCCAAAGALLQHKSPSALG 176


>gi|113431383 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 185

 Score = 36.6 bits (83), Expect = 0.082
 Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 408 EPTP---PEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPL 464
           +P P   P  +A     P +AP    +  AQE L+D    S+ AP P  D  PR+    L
Sbjct: 63  QPPPGLVPPSSAPLPAAPATAPAAAAR--AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQL 120

Query: 465 L-LPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADG 519
           L  P+  PG R +   +  + L        +    P   C++  A  Q   PSA G
Sbjct: 121 LEQPQRGPGSRAHTPQSPHKHLGTQGAVTDKEKERPPSCCAAAGALLQHKSPSALG 176


>gi|239744532 PREDICTED: hypothetical protein XP_002343185 [Homo
           sapiens]
          Length = 185

 Score = 36.6 bits (83), Expect = 0.082
 Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 408 EPTP---PEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPL 464
           +P P   P  +A     P +AP    +  AQE L+D    S+ AP P  D  PR+    L
Sbjct: 63  QPPPGLVPPSSAPLPAAPATAPAAAAR--AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQL 120

Query: 465 L-LPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADG 519
           L  P+  PG R +   +  + L        +    P   C++  A  Q   PSA G
Sbjct: 121 LEQPQRGPGSRAHTPQSPHKHLGTQGAVTDKEKERPPSCCAAAGALLQHKSPSALG 176


>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
           sapiens]
          Length = 691

 Score = 36.6 bits (83), Expect = 0.082
 Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 14/171 (8%)

Query: 358 LQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAI 417
           L  +L   ++ + + Q+ +      +    P P  +AP    S S    L+PTPP+    
Sbjct: 175 LNSQLQQLQLQLQQQQQQQQQQPPPSTNQHPQPAPQAP----SQSQQQPLQPTPPQQPPP 230

Query: 418 SSLRPPSAPEMLTQHGAQEQLEDHPGHSSQ-APIPRADPLPRRTRRPLLLPRLDPGQRGN 476
           +S +PP+    L Q    +Q + H    +Q  P P      +++  P   P   PG  G 
Sbjct: 231 ASQQPPAPTSQLQQAPQPQQHQPHSHSQNQNQPSP-----TQQSSSPPQKPSQSPG-HGL 284

Query: 477 KLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAG---PSADGISSRL 524
             P       + V+    S AA      S  A+ Q  G    S  G++ +L
Sbjct: 285 PSPLTPPNPLQLVNNPLASQAAAAAAAMSSIASSQAFGNALSSLQGVTGQL 335


>gi|239748340 PREDICTED: hypothetical protein XP_002346633 [Homo
           sapiens]
          Length = 465

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 13/118 (11%)

Query: 384 FLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSA--PEMLTQHGAQEQLEDH 441
           F+ VP  +G  P+    L     LE  P +DT +  LR  +    E+     A  QL   
Sbjct: 200 FVEVPEKEGYEPHIPDHLRPEYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQLRQL 259

Query: 442 PG---HSSQAPIPRADPLPR--------RTRRPLLLPRLDPGQRGNKLPTGEQGLDED 488
           PG     S A   RA P P+        R R P++   +D    G +LPT  + +  D
Sbjct: 260 PGPLASPSSASPSRALPEPQEAQKLAAERARAPVVPYGVDLHYWGQELPTAGKIVKSD 317


>gi|210032580 SET domain containing 1B [Homo sapiens]
          Length = 1923

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 11/183 (6%)

Query: 281  KGGSTSALKENATGHVESMAWTTPDPTSPDEACPDGRKENGCLSGHDL---ESIRPAGLH 337
            K  +TS+ + + +   ES + ++P  +S DE     R+E       ++   ES+  AG  
Sbjct: 1106 KAEATSSSESSESSEFESSSESSPS-SSEDEEEVVAREEEEEEEEEEMVAEESMASAGPE 1164

Query: 338  NSAR-GEVLGLSSSL-GKELVFLQEELDLSEIHIPEAQEVEMASGHFAFLHVPVP-DGRA 394
            +  + GE   L+      + + ++EE+D+    +   +   M       + V  P D R 
Sbjct: 1165 DFEQDGEEAALAPGAPAVDSLGMEEEVDIETEAVAPEERPSMLDEPPLPVGVEEPADSRE 1224

Query: 395  PYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRAD 454
            P  +  LS   ++  +P         RPP +PE   +H     LE  P      P+P   
Sbjct: 1225 PPEEPGLSQEGAMLLSPEPPAKEVEARPPLSPERAPEH----DLEVEPEPPMMLPLPLQP 1280

Query: 455  PLP 457
            PLP
Sbjct: 1281 PLP 1283


>gi|27436984 potassium voltage-gated channel, Shal-related
           subfamily, member 3 isoform 1 [Homo sapiens]
          Length = 655

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 358 LQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLE-PTPPEDTA 416
           L+   +LS IHI  +++  + +   + L++   DG  P CK S   ++ +  PTPP  T 
Sbjct: 567 LRSMQELSTIHIQGSEQPSLTTSRSS-LNLKADDGLRPNCKTSQITTAIISIPTPPALTP 625

Query: 417 ISSLRPPSA 425
               RPP A
Sbjct: 626 EGESRPPPA 634


>gi|27436986 potassium voltage-gated channel, Shal-related
           subfamily, member 3 isoform 2 [Homo sapiens]
          Length = 636

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 358 LQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLE-PTPPEDTA 416
           L+   +LS IHI  +++  + +   + L++   DG  P CK S   ++ +  PTPP  T 
Sbjct: 548 LRSMQELSTIHIQGSEQPSLTTSRSS-LNLKADDGLRPNCKTSQITTAIISIPTPPALTP 606

Query: 417 ISSLRPPSA 425
               RPP A
Sbjct: 607 EGESRPPPA 615


>gi|54860079 nadrin isoform 1 [Homo sapiens]
          Length = 881

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 57/255 (22%), Positives = 88/255 (34%), Gaps = 35/255 (13%)

Query: 278 HHPKGGSTSALKENATGHVESMAWTTPDPTSPDEACPDGRKENGCLSGHDLESIRPAGLH 337
           H+  G S   L+      V+  A   P P +P    P G+  +G        S +P    
Sbjct: 619 HNAAGPSPHTLRRA----VKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRS 674

Query: 338 NSA----RGEVLGLSSSLGKELVFLQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGR 393
            S      G+  G  S+  +     +    LS I  P     +  +     +H   P+ +
Sbjct: 675 PSPPTQHTGQPPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMHTK-PNSQ 733

Query: 394 APYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQH-----------GAQEQLEDHP 442
            P    +L +   LE   P  T   +  PPS P +  Q+           G  E  + H 
Sbjct: 734 GPPNPMALPSEHGLEQ--PSHTPPQTPTPPSTPPLGKQNPSLPAPQTLAGGNPETAQPHA 791

Query: 443 GHSSQAPIPRADPLPRRTRRPLLLPRLDP--------GQRGNKLPTGEQGLDEDVDGVCE 494
           G      +PR  P+P+   RP + P   P            N  PT  + + +    V E
Sbjct: 792 G-----TLPRPRPVPKPRNRPSVPPPPQPPGVHSAGDSSLTNTAPTASKIVTDSNSRVSE 846

Query: 495 SHAAPGLECSSGSAN 509
            H +   E  S SA+
Sbjct: 847 PHRSIFPEMHSDSAS 861


>gi|54860105 nadrin isoform 2 [Homo sapiens]
          Length = 803

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 57/255 (22%), Positives = 88/255 (34%), Gaps = 35/255 (13%)

Query: 278 HHPKGGSTSALKENATGHVESMAWTTPDPTSPDEACPDGRKENGCLSGHDLESIRPAGLH 337
           H+  G S   L+      V+  A   P P +P    P G+  +G        S +P    
Sbjct: 541 HNAAGPSPHTLRRA----VKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRS 596

Query: 338 NSA----RGEVLGLSSSLGKELVFLQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGR 393
            S      G+  G  S+  +     +    LS I  P     +  +     +H   P+ +
Sbjct: 597 PSPPTQHTGQPPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMHTK-PNSQ 655

Query: 394 APYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQH-----------GAQEQLEDHP 442
            P    +L +   LE   P  T   +  PPS P +  Q+           G  E  + H 
Sbjct: 656 GPPNPMALPSEHGLEQ--PSHTPPQTPTPPSTPPLGKQNPSLPAPQTLAGGNPETAQPHA 713

Query: 443 GHSSQAPIPRADPLPRRTRRPLLLPRLDP--------GQRGNKLPTGEQGLDEDVDGVCE 494
           G      +PR  P+P+   RP + P   P            N  PT  + + +    V E
Sbjct: 714 G-----TLPRPRPVPKPRNRPSVPPPPQPPGVHSAGDSSLTNTAPTASKIVTDSNSRVSE 768

Query: 495 SHAAPGLECSSGSAN 509
            H +   E  S SA+
Sbjct: 769 PHRSIFPEMHSDSAS 783


>gi|19882241 immunoglobulin superfamily, DCC subclass, member 4 [Homo
            sapiens]
          Length = 1250

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 66/269 (24%), Positives = 102/269 (37%), Gaps = 28/269 (10%)

Query: 326  HDLESIRPAGLHNSARGEVLGLSSSLGKELVFLQEEL-DLSEIHIPEAQEVEMASGHFAF 384
            H LES         AR EV     S  ++++ LQE+L D  ++H      V +  G    
Sbjct: 911  HGLESDTRYFFKMGARTEVGPGPFSRLQDVITLQEKLSDSLDMHSVTGIIVGVCLGLLCL 970

Query: 385  LHVPVPD-GRAPYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPG 443
            L        R+P+ ++    SS+  P  P   + + L PPS P     H  +  +  HP 
Sbjct: 971  LACMCAGLRRSPHRESLPGLSSTATPGNPALYSRARLGPPSPP---AAHELESLVHPHPQ 1027

Query: 444  HSSQAPIPRADPLPRRTRRPLLLPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAP-GLE 502
              S  P   +D   R     L+   +  G+  +K                 S A P GL 
Sbjct: 1028 DWSPPP---SDVEDRAEVHSLMGGGVSEGRSHSKRKI--------------SWAQPSGLS 1070

Query: 503  CSSGSANCQ--GAGPSADGISSRLTPAESCMGLVRMNLYTHCVKGLVLSLLAEEPLLGDS 560
             +   A C+   AGP      + L PA +   L+   L    +KG         P   + 
Sbjct: 1071 WAGSWAGCELPQAGPRPALTRALLPPAGTGQTLLLQALVYDAIKG--NGRKKSPPACRNQ 1128

Query: 561  AAIEEVYHSSLASLNG-LEVHLKETLPRD 588
               E + HS  ++ NG  ++HL++  P D
Sbjct: 1129 VEAEVIVHSDFSASNGNPDLHLQDLEPED 1157


>gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 356

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 13/83 (15%)

Query: 382 FAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDH 441
           F+  H  + +G    C  +     S  P PP       L PP  P   TQ   +      
Sbjct: 161 FSSRHSSISEGEGDRCGFAEPPGGSSPPAPP-------LPPPPKPGSPTQRAREASSWKP 213

Query: 442 PGHSSQAPIPRADPLPRRTRRPL 464
           PGHS  AP  R       T+RPL
Sbjct: 214 PGHSHTAPPGRG------TQRPL 230


>gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens]
          Length = 930

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 25/109 (22%)

Query: 420 LRPPSAPEMLTQHGAQ------------EQLEDHPGHSSQAPIPRADPLPRRTRRP---- 463
           L+P     M+ QHG              E+LE+ PG  S   +P A PLP     P    
Sbjct: 403 LQPGLVNHMVVQHGLPGPDSQSAGLFKTERLEEFPG--STVDLPPAPPLPPLPPPPGPPP 460

Query: 464 -------LLLPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLECSS 505
                  L  P L P  +   LP      D ++DG+   H    ++CS+
Sbjct: 461 PYHAHAHLHHPELGPHAQQLALPQATLDDDGEMDGIGGKHCCRWIDCSA 509


>gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens]
          Length = 775

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 25/109 (22%)

Query: 420 LRPPSAPEMLTQHGAQ------------EQLEDHPGHSSQAPIPRADPLPRRTRRP---- 463
           L+P     M+ QHG              E+LE+ PG  S   +P A PLP     P    
Sbjct: 248 LQPGLVNHMVVQHGLPGPDSQSAGLFKTERLEEFPG--STVDLPPAPPLPPLPPPPGPPP 305

Query: 464 -------LLLPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLECSS 505
                  L  P L P  +   LP      D ++DG+   H    ++CS+
Sbjct: 306 PYHAHAHLHHPELGPHAQQLALPQATLDDDGEMDGIGGKHCCRWIDCSA 354


>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
          Length = 2063

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 24/152 (15%)

Query: 394 APYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAP-IPR 452
           AP  K SL    S  PTP +   +++  P S+P    Q         +       P  P+
Sbjct: 401 APQMK-SLQGGPSRVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGPRPPQ 459

Query: 453 ADPLPRRTRRPLLLPRLDP-GQRGNKLPT-----------GEQGLDEDVDGVCESHAAPG 500
            +PLP+  ++P+  P  +P  Q+GN  P            G Q L   + G+      PG
Sbjct: 460 NNPLPQGFQQPVSSPGRNPMVQQGNVPPNFMVMQQQPPNQGPQSLHPGLGGM-PKRLPPG 518

Query: 501 LECSSGSAN---CQGAGPSADGISSRLTPAES 529
              S+G AN    QG  PS    ++  TP  S
Sbjct: 519 F--SAGQANPNFMQGQVPS----TTATTPGNS 544


>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
            sapiens]
          Length = 1309

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 14/109 (12%)

Query: 388  PVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQ 447
            P PD  A    +  SAS S   +P    A    RP S   +  + G           +S 
Sbjct: 1125 PAPDVPADTTASPPSASPS-SSSPASPAAAGHTRPSSLHGLAAKLGPPRPKTGRRKSTSS 1183

Query: 448  ------------APIPRA-DPLPRRTRRPLLLPRLDPGQRGNKLPTGEQ 483
                        AP PR+  PLP     P   PRL  GQ  +KL TGE+
Sbjct: 1184 IPPSPLACPPISAPPPRSPSPLPGHPPAPARSPRLRRGQSADKLGTGER 1232


>gi|4503615 even-skipped homeobox 1 [Homo sapiens]
          Length = 407

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 451 PRADPLPRRTRRPLLLPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANC 510
           P  +P  +   R  L PR  P     +   G +  +E VDG+  S A PG E     A  
Sbjct: 34  PLPEPPEKMVPRGCLSPRAVPPATRERGGGGPE--EEPVDGLAGSAAGPGAEPQVAGAAM 91

Query: 511 QGAG---PSADGISSRLTPAES 529
            G G   PS D +S +  P+ S
Sbjct: 92  LGPGPPAPSVDSLSGQGQPSSS 113


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 55/268 (20%), Positives = 96/268 (35%), Gaps = 38/268 (14%)

Query: 194   LIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALP-PNVQ-----IIPVFVTK 247
             L+ S++   S T  +L       E          +E  +A+P P V      ++   VT 
Sbjct: 10881 LVTSSRAVISTTIPILTLSPGEPETTPSMATSHGEEASSAIPTPTVSPGVPGVVTSLVTS 10940

Query: 248   EEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGS-------------TSALKENATG 294
               A++    P+  +T SL  P      +  H  + GS             TS +  +   
Sbjct: 10941 SRAVTSTTIPI--LTFSLGEPETTPSMATSHGTEAGSAVPTVLPEVPGMVTSLVASSRAV 10998

Query: 295   HVESMAWTTPDPTSPDEACPDGRKENGCLSGHDLESIRPA--GLHNSARGEVLGLSSSLG 352
                ++   T  P  P E  P     +G  +   + ++ P   G+  S      G++S+  
Sbjct: 10999 TSTTLPTLTLSPGEP-ETTPSMATSHGAEASSTVPTVSPEVPGVVTSLVTSSSGVNSTSI 11057

Query: 353   KELVFLQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPD-----GRAPYCKASLSASSSL 407
               L+    EL+ +           MA+ H A     VP      G +      +++S ++
Sbjct: 11058 PTLILSPGELETTP---------SMATSHGAEASSAVPTPTVSPGVSGVVTPLVTSSRAV 11108

Query: 408   EPTPPEDTAISSLRPPSAPEMLTQHGAQ 435
               T      +SS  P + P M T HG +
Sbjct: 11109 TSTTIPILTLSSSEPETTPSMATSHGVE 11136


>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
          Length = 1271

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 388 PVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQ 447
           P P   AP     L + +S EP P        L P   PE  ++   +   E  P  +++
Sbjct: 32  PPPPPPAPPPAPPLLSEASPEPIPEP---CPELAPGPCPEATSESATELYTEPTPEPATE 88

Query: 448 -----APIPRADPLPRRTRRPLLLPRLDPGQRGNKLPTGEQGLD 486
                AP P  +P P     P   P  +P       PT E  L+
Sbjct: 89  PASEPAPEPATEPAPEPATEPAPEPAPEPATESAPEPTPEPALE 132


>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
           sapiens]
          Length = 603

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 391 DGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPI 450
           D     C+ASL+  +S+EP   E    SS   P+A  +L   G  +  ++HPG  S   +
Sbjct: 533 DKHGDLCEASLT--NSVEPAQGEAREGSSQDNPTAQPVLQLLGEMQDHQEHPGLGSNCCV 590

Query: 451 PRA--DPLPRRTR 461
           P      LPRR R
Sbjct: 591 PCFCWAWLPRRRR 603


>gi|169166894 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 145

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 408 EPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQA-PIPRADPLPRRTRRP 463
           E     D +ISS  PP+ P++  + G  E+L D+    ++A P   A  LPR  R P
Sbjct: 20  EKLASSDDSISSAIPPTRPKLRRRKGDTERLRDYATARARAQPASSAAQLPRSHRPP 76


>gi|169166324 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 145

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 408 EPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQA-PIPRADPLPRRTRRP 463
           E     D +ISS  PP+ P++  + G  E+L D+    ++A P   A  LPR  R P
Sbjct: 20  EKLASSDDSISSAIPPTRPKLRRRKGDTERLRDYATARARAQPASSAAQLPRSHRPP 76


>gi|55953110 retinoblastoma protein-binding zinc finger protein
           isoform c [Homo sapiens]
          Length = 1481

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 370 PEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASS---SLEPTPPEDTAISSLRPPSAP 426
           P  Q   ++SG    L +P      P C   L+ ++    L PT P     SS  P   P
Sbjct: 748 PALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCP 807

Query: 427 EMLTQHGAQEQLE--DHPGHSSQAPIPRADPL 456
             L+   AQ  L         S +PIP  +PL
Sbjct: 808 SPLSNATAQSPLPILSPTVSPSPSPIPPVEPL 839


>gi|20336260 retinoblastoma protein-binding zinc finger protein
            isoform b [Homo sapiens]
          Length = 1682

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 370  PEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASS---SLEPTPPEDTAISSLRPPSAP 426
            P  Q   ++SG    L +P      P C   L+ ++    L PT P     SS  P   P
Sbjct: 949  PALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCP 1008

Query: 427  EMLTQHGAQEQLE--DHPGHSSQAPIPRADPL 456
              L+   AQ  L         S +PIP  +PL
Sbjct: 1009 SPLSNATAQSPLPILSPTVSPSPSPIPPVEPL 1040


>gi|20336258 retinoblastoma protein-binding zinc finger protein
            isoform a [Homo sapiens]
          Length = 1718

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 370  PEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASS---SLEPTPPEDTAISSLRPPSAP 426
            P  Q   ++SG    L +P      P C   L+ ++    L PT P     SS  P   P
Sbjct: 949  PALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCP 1008

Query: 427  EMLTQHGAQEQLE--DHPGHSSQAPIPRADPL 456
              L+   AQ  L         S +PIP  +PL
Sbjct: 1009 SPLSNATAQSPLPILSPTVSPSPSPIPPVEPL 1040


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,638,287
Number of Sequences: 37866
Number of extensions: 1597639
Number of successful extensions: 6026
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 5867
Number of HSP's gapped (non-prelim): 335
length of query: 703
length of database: 18,247,518
effective HSP length: 109
effective length of query: 594
effective length of database: 14,120,124
effective search space: 8387353656
effective search space used: 8387353656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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