Guide to the Human Genome
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Name: GLIS3 Sequence: fasta or formatted (930aa) NCBI GI: 109637784
Description:

GLIS family zinc finger 3 isoform a

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [775aa] GLIS family zinc finger 3 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         60           3
 C cysteine            2.4         22           2
 D aspartate           3.2         30           3
 E glutamate           3.7         34           2
 F phenylalanine       2.8         26           1
 G glycine             8.4         78           3
 H histidine           5.1         47           2
 I isoleucine          3.0         28           2
 K lysine              3.5         33           2
 L leucine             8.5         79           2
 M methionine          1.9         18           2
 N asparagine          3.2         30           2
 P proline            11.6        108           4
 Q glutamine           5.6         52           2
 R arginine            5.3         49           2
 S serine             13.7        127           5
 T threonine           4.9         46           2
 V valine              4.2         39           2
 W tryptophan          0.3          3           1
 Y tyrosine            2.3         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GLIS family zinc finger 3 isoform a 
GLIS3                 0.831   GLIS family zinc finger 3 isoform b 
GLIS1                 0.196   GLIS family zinc finger 1 
GLI2                  0.132   GLI-Kruppel family member GLI2 
GLI1                  0.125   GLI family zinc finger 1 isoform 1 
GLI3                  0.124   GLI-Kruppel family member GLI3 
GLI1                  0.107   GLI family zinc finger 1 isoform 2 
GLIS2                 0.095   GLIS family zinc finger 2 
ZIC5                  0.091   zinc finger protein of the cerebellum 5 
ZIC2                  0.085   zinc finger protein of the cerebellum 2 
ZIC1                  0.083   zinc finger protein of the cerebellum 1 
ZIC4                  0.083   zinc finger protein of the cerebellum 4 
ZIC3                  0.079   zinc finger protein of the cerebellum 3 
ZNF143                0.052   zinc finger protein 143 
MTF1                  0.048   metal-regulatory transcription factor 1 
ZNF358                0.047   zinc finger protein 358 
ZNF384                0.047   nuclear matrix transcription factor 4 isoform c [Hom...
ZNF384                0.047   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.047   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.047   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.047   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.047   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF76                 0.046   zinc finger protein 76 (expressed in testis) 
ZNF362                0.046   zinc finger protein 362 
ZNF498                0.045   zinc finger and SCAN domain containing 25 
ZNF384                0.044   nuclear matrix transcription factor 4 isoform d [Ho...
ZNF629                0.044   zinc finger protein 629 
ZNF182                0.043   zinc finger protein 21 isoform 2 
ZNF182                0.043   zinc finger protein 21 isoform 1 
ZNF389                0.042   zinc finger protein 389 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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