Guide to the Human Genome
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Name: HPS4 Sequence: fasta or formatted (703aa) NCBI GI: 23110970
Description:

light ear protein isoform b

Referenced in:

Lysosomes and Related Organelles

Other entries for this name:
alt prot [708aa] light ear protein isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         61           2
 C cysteine            2.7         19           2
 D aspartate           4.7         33           1
 E glutamate           7.1         50           2
 F phenylalanine       3.0         21           2
 G glycine             6.7         47           2
 H histidine           3.3         23           2
 I isoleucine          3.3         23           2
 K lysine              3.6         25           1
 L leucine            12.8         90           4
 M methionine          1.4         10           1
 N asparagine          3.0         21           1
 P proline             8.0         56           2
 Q glutamine           5.3         37           2
 R arginine            4.4         31           2
 S serine              9.2         65           3
 T threonine           4.8         34           2
 V valine              5.1         36           2
 W tryptophan          0.7          5           1
 Y tyrosine            2.3         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   light ear protein isoform b 
HPS4                  0.988   light ear protein isoform a 
LOC728056             0.009   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC728056             0.009   PREDICTED: similar to IQ motif and SEC7 domain-cont...
KIAA1530              0.009   hypothetical protein LOC57654 
LOC100134209          0.009   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC731035             0.009   PREDICTED: hypothetical protein 
LOC100288881          0.009   PREDICTED: hypothetical protein XP_002343185 
POU6F2                0.009   POU domain, class 6, transcription factor 2 
LOC100290485          0.008   PREDICTED: hypothetical protein XP_002346633 
SETD1B                0.008   SET domain containing 1B 
KCND3                 0.007   potassium voltage-gated channel, Shal-related subfam...
KCND3                 0.007   potassium voltage-gated channel, Shal-related subfam...
ARHGAP17              0.007   nadrin isoform 1 
ARHGAP17              0.007   nadrin isoform 2 
IGDCC4                0.007   immunoglobulin superfamily, DCC subclass, member 4 [...
LOC100292378          0.006   PREDICTED: hypothetical protein 
GLIS3                 0.006   GLIS family zinc finger 3 isoform a 
GLIS3                 0.006   GLIS family zinc finger 3 isoform b 
NCOA6                 0.006   nuclear receptor coactivator 6 
MAST3                 0.006   microtubule associated serine/threonine kinase 3 [H...
EVX1                  0.006   even-skipped homeobox 1 
MUC16                 0.006   mucin 16 
DGKK                  0.006   diacylglycerol kinase kappa 
GOLGA8B               0.006   golgi autoantigen, golgin subfamily a, 8B 
LOC729350             0.006   PREDICTED: hypothetical protein 
LOC729350             0.006   PREDICTED: hypothetical protein 
PRDM2                 0.006   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.006   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.006   retinoblastoma protein-binding zinc finger protein i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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