Guide to the Human Genome
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Name: LOC728056 Sequence: fasta or formatted (185aa) NCBI GI: 113428915
Description:

PREDICTED: similar to IQ motif and SEC7 domain-containing protein 3

Not currently referenced in the text

Other entries for this name:
alt mRNA {185aa} PREDICTED: similar to IQ motif and SEC7 domain-containing protein 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         24           4
 C cysteine            1.6          3           2
 D aspartate           2.7          5           1
 E glutamate           7.6         14           1
 F phenylalanine       0.0          0           0
 G glycine             5.4         10           1
 H histidine           4.3          8           2
 I isoleucine          1.6          3           1
 K lysine              3.8          7           1
 L leucine            11.9         22           2
 M methionine          0.5          1           1
 N asparagine          1.1          2           1
 P proline            13.0         24           3
 Q glutamine          10.8         20           2
 R arginine            8.1         15           2
 S serine              7.0         13           2
 T threonine           3.8          7           1
 V valine              3.2          6           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to IQ motif and SEC7 domain-cont... 
LOC728056             1.000   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC100134209          0.991   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC731035             0.991   PREDICTED: hypothetical protein 
LOC100288881          0.971   PREDICTED: hypothetical protein XP_002343185 
IQSEC2                0.094   IQ motif and Sec7 domain 2 isoform1 
RERE                  0.057   atrophin-1 like protein isoform b 
RERE                  0.057   atrophin-1 like protein isoform a 
RERE                  0.057   atrophin-1 like protein isoform a 
CDKN1C                0.057   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.057   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.057   cyclin-dependent kinase inhibitor 1C isoform a 
AAK1                  0.057   AP2 associated kinase 1 
NACA                  0.057   nascent polypeptide-associated complex alpha subuni...
KCNN3                 0.054   small conductance calcium-activated potassium chann...
EMILIN2               0.051   elastin microfibril interfacer 2 
ANXA11                0.049   annexin A11 
ANXA11                0.049   annexin A11 
ANXA11                0.049   annexin A11 
FMNL1                 0.049   formin-like 1 
LOC390595             0.046   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.046   PREDICTED: similar to ubiquitin-associated protein ...
LOC100131102          0.046   PREDICTED: hypothetical protein 
LOC390595             0.046   PREDICTED: hypothetical protein 
LOC100131102          0.046   PREDICTED: hypothetical protein 
TSC22D2               0.046   TSC22 domain family, member 2 
SMARCC2               0.046   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.046   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.046   SWI/SNF-related matrix-associated actin-dependent r...
DMD                   0.043   dystrophin Dp427c isoform 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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