Guide to the Human Genome
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Name: LOC100288881 Sequence: fasta or formatted (185aa) NCBI GI: 239744532
Description:

PREDICTED: hypothetical protein XP_002343185

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         25           4
 C cysteine            1.1          2           2
 D aspartate           2.7          5           1
 E glutamate           7.6         14           1
 F phenylalanine       0.0          0           0
 G glycine             5.4         10           1
 H histidine           4.9          9           2
 I isoleucine          1.6          3           1
 K lysine              3.2          6           1
 L leucine            11.9         22           2
 M methionine          0.5          1           1
 N asparagine          1.6          3           1
 P proline            13.0         24           3
 Q glutamine          10.3         19           2
 R arginine            8.1         15           2
 S serine              7.0         13           2
 T threonine           3.2          6           1
 V valine              3.2          6           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343185 
LOC100134209          0.983   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC731035             0.983   PREDICTED: hypothetical protein 
LOC728056             0.969   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC728056             0.969   PREDICTED: similar to IQ motif and SEC7 domain-cont...
IQSEC2                0.105   IQ motif and Sec7 domain 2 isoform1 
RERE                  0.063   atrophin-1 like protein isoform b 
RERE                  0.063   atrophin-1 like protein isoform a 
RERE                  0.063   atrophin-1 like protein isoform a 
KCNN3                 0.054   small conductance calcium-activated potassium chann...
AAK1                  0.054   AP2 associated kinase 1 
NACA                  0.054   nascent polypeptide-associated complex alpha subuni...
CDKN1C                0.051   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.051   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.051   cyclin-dependent kinase inhibitor 1C isoform a 
SMARCC2               0.048   SWI/SNF-related matrix-associated actin-dependent r...
SMARCC2               0.048   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.048   SWI/SNF-related matrix-associated actin-dependent re...
ANXA11                0.048   annexin A11 
ANXA11                0.048   annexin A11 
ANXA11                0.048   annexin A11 
FMNL1                 0.046   formin-like 1 
LOC390595             0.046   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.046   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.046   PREDICTED: hypothetical protein 
QSK                   0.046   serine/threonine-protein kinase QSK 
LOC100131102          0.043   PREDICTED: hypothetical protein 
LOC100131102          0.043   PREDICTED: hypothetical protein 
KIAA1543              0.043   NEZHA isoform 2 
KIAA1543              0.043   NEZHA isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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