Guide to the Human Genome
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Name: LOC729350 Sequence: fasta or formatted (145aa) NCBI GI: 169166894
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {145aa} PREDICTED: hypothetical protein
alt prot {145aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         21           2
 C cysteine            0.0          0           0
 D aspartate           6.2          9           2
 E glutamate           6.9         10           1
 F phenylalanine       1.4          2           1
 G glycine             7.6         11           2
 H histidine           1.4          2           1
 I isoleucine          2.1          3           1
 K lysine              3.4          5           1
 L leucine             7.6         11           1
 M methionine          0.7          1           1
 N asparagine          2.1          3           1
 P proline            13.8         20           2
 Q glutamine           2.8          4           1
 R arginine           10.3         15           3
 S serine              8.3         12           2
 T threonine           6.2          9           2
 V valine              1.4          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729350             1.000   PREDICTED: hypothetical protein 
LOC729350             0.989   PREDICTED: hypothetical protein 
E2F5                  0.048   E2F transcription factor 5 isoform 2 
E2F5                  0.048   E2F transcription factor 5 isoform 1 
LOC728650             0.044   PREDICTED: hypothetical protein 
LOC728650             0.044   PREDICTED: hypothetical protein 
SYNPO                 0.037   synaptopodin isoform A 
WIPF3                 0.037   WAS/WASL interacting protein family, member 3 [Homo...
RTN4                  0.037   reticulon 4 isoform B 
RTN4                  0.037   reticulon 4 isoform D 
RTN4                  0.037   reticulon 4 isoform A 
GNAS                  0.037   GNAS complex locus XLas 
LOC100290265          0.037   PREDICTED: hypothetical protein XP_002346787 
CASKIN1               0.033   CASK interacting protein 1 
LOC100293604          0.033   PREDICTED: hypothetical protein 
LOC100287837          0.033   PREDICTED: hypothetical protein XP_002343157 
RIMS2                 0.033   regulating synaptic membrane exocytosis 2 isoform a...
RIMS2                 0.033   regulating synaptic membrane exocytosis 2 isoform b...
ZNF628                0.033   zinc finger protein 628 
FAM189B               0.033   hypothetical protein LOC10712 isoform b 
FAM189B               0.033   hypothetical protein LOC10712 isoform a 
LOC100127891          0.033   PREDICTED: similar to hCG2042508 
LOC100127891          0.033   PREDICTED: similar to hCG2042508 
LOC100127891          0.033   PREDICTED: similar to hCG2042508 
MAMSTR                0.033   MEF2 activating motif and SAP domain containing tra...
MAMSTR                0.033   MEF2 activating motif and SAP domain containing tran...
USP51                 0.033   ubiquitin specific protease 51 
ST5                   0.033   suppression of tumorigenicity 5 isoform 1 
ST5                   0.033   suppression of tumorigenicity 5 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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