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Search of human proteins with 23110966
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23110966 light ear protein isoform a [Homo sapiens]
(708 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23110966 light ear protein isoform a [Homo sapiens] 1431 0.0
gi|23110970 light ear protein isoform b [Homo sapiens] 1405 0.0
gi|169214926 PREDICTED: similar to IQ motif and SEC7 domain-cont... 37 0.048
gi|113428915 PREDICTED: similar to IQ motif and SEC7 domain-cont... 37 0.048
gi|190358543 hypothetical protein LOC57654 [Homo sapiens] 37 0.048
gi|169217823 PREDICTED: similar to IQ motif and SEC7 domain-cont... 37 0.082
gi|113431383 PREDICTED: hypothetical protein [Homo sapiens] 37 0.082
gi|239744532 PREDICTED: hypothetical protein XP_002343185 [Homo ... 37 0.082
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 37 0.082
gi|239748340 PREDICTED: hypothetical protein XP_002346633 [Homo ... 36 0.14
gi|210032580 SET domain containing 1B [Homo sapiens] 36 0.14
gi|27436984 potassium voltage-gated channel, Shal-related subfam... 35 0.18
gi|27436986 potassium voltage-gated channel, Shal-related subfam... 35 0.18
gi|54860079 nadrin isoform 1 [Homo sapiens] 35 0.24
gi|54860105 nadrin isoform 2 [Homo sapiens] 35 0.24
gi|19882241 immunoglobulin superfamily, DCC subclass, member 4 [... 35 0.31
gi|239755589 PREDICTED: hypothetical protein [Homo sapiens] 34 0.53
gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens] 34 0.53
gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens] 34 0.53
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 33 0.70
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 33 0.70
gi|4503615 even-skipped homeobox 1 [Homo sapiens] 33 0.70
gi|83367077 mucin 16 [Homo sapiens] 33 0.91
gi|62000702 diacylglycerol kinase kappa [Homo sapiens] 33 0.91
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap... 33 1.2
gi|169166894 PREDICTED: hypothetical protein [Homo sapiens] 33 1.2
gi|169166324 PREDICTED: hypothetical protein [Homo sapiens] 33 1.2
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 33 1.2
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 33 1.2
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 33 1.2
>gi|23110966 light ear protein isoform a [Homo sapiens]
Length = 708
Score = 1431 bits (3704), Expect = 0.0
Identities = 708/708 (100%), Positives = 708/708 (100%)
Query: 1 MATSTSTEAKSASWWNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGV 60
MATSTSTEAKSASWWNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGV
Sbjct: 1 MATSTSTEAKSASWWNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGV 60
Query: 61 VRCVSDISDSPPTLVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKRFLDQLVGFFNFYN 120
VRCVSDISDSPPTLVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKRFLDQLVGFFNFYN
Sbjct: 61 VRCVSDISDSPPTLVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKRFLDQLVGFFNFYN 120
Query: 121 GPVSLAYENCSQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARIL 180
GPVSLAYENCSQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARIL
Sbjct: 121 GPVSLAYENCSQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARIL 180
Query: 181 QTCQRSPHILAGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALP 240
QTCQRSPHILAGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALP
Sbjct: 181 QTCQRSPHILAGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALP 240
Query: 241 PNVQIIPVFVTKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGH 300
PNVQIIPVFVTKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGH
Sbjct: 241 PNVQIIPVFVTKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGH 300
Query: 301 VESMAWTTPDPTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKEL 360
VESMAWTTPDPTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKEL
Sbjct: 301 VESMAWTTPDPTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKEL 360
Query: 361 VFLQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDT 420
VFLQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDT
Sbjct: 361 VFLQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDT 420
Query: 421 AISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRG 480
AISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRG
Sbjct: 421 AISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRG 480
Query: 481 NKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVR 540
NKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVR
Sbjct: 481 NKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVR 540
Query: 541 MNLYTHCVKGLVLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSS 600
MNLYTHCVKGLVLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSS
Sbjct: 541 MNLYTHCVKGLVLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSS 600
Query: 601 TYNFTHYDRIQSLLMANLPQVATPQDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYA 660
TYNFTHYDRIQSLLMANLPQVATPQDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYA
Sbjct: 601 TYNFTHYDRIQSLLMANLPQVATPQDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYA 660
Query: 661 CCNPIQETYFQQLAPAARSSGFPNPQDGAFSLSGKAKQKLLKHGVNLL 708
CCNPIQETYFQQLAPAARSSGFPNPQDGAFSLSGKAKQKLLKHGVNLL
Sbjct: 661 CCNPIQETYFQQLAPAARSSGFPNPQDGAFSLSGKAKQKLLKHGVNLL 708
>gi|23110970 light ear protein isoform b [Homo sapiens]
Length = 703
Score = 1405 bits (3636), Expect = 0.0
Identities = 695/698 (99%), Positives = 696/698 (99%)
Query: 11 SASWWNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGVVRCVSDISDS 70
S + WNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGVVRCVSDISDS
Sbjct: 6 SLARWNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGVVRCVSDISDS 65
Query: 71 PPTLVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKRFLDQLVGFFNFYNGPVSLAYENC 130
PPTLVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKRFLDQLVGFFNFYNGPVSLAYENC
Sbjct: 66 PPTLVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKRFLDQLVGFFNFYNGPVSLAYENC 125
Query: 131 SQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARILQTCQRSPHIL 190
SQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARILQTCQRSPHIL
Sbjct: 126 SQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARILQTCQRSPHIL 185
Query: 191 AGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALPPNVQIIPVFV 250
AGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALPPNVQIIPVFV
Sbjct: 186 AGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALPPNVQIIPVFV 245
Query: 251 TKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGHVESMAWTTPD 310
TKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGHVESMAWTTPD
Sbjct: 246 TKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGHVESMAWTTPD 305
Query: 311 PTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKELVFLQEELDLS 370
PTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKELVFLQEELDLS
Sbjct: 306 PTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKELVFLQEELDLS 365
Query: 371 EIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSA 430
EIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSA
Sbjct: 366 EIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSA 425
Query: 431 PEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRGNKLPTGEQGL 490
PEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRGNKLPTGEQGL
Sbjct: 426 PEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRGNKLPTGEQGL 485
Query: 491 DEDVDGVCESHAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVRMNLYTHCVKG 550
DEDVDGVCESHAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVRMNLYTHCVKG
Sbjct: 486 DEDVDGVCESHAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVRMNLYTHCVKG 545
Query: 551 LVLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSSTYNFTHYDRI 610
LVLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSSTYNFTHYDRI
Sbjct: 546 LVLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSSTYNFTHYDRI 605
Query: 611 QSLLMANLPQVATPQDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYACCNPIQETYF 670
QSLLMANLPQVATPQDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYACCNPIQETYF
Sbjct: 606 QSLLMANLPQVATPQDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYACCNPIQETYF 665
Query: 671 QQLAPAARSSGFPNPQDGAFSLSGKAKQKLLKHGVNLL 708
QQLAPAARSSGFPNPQDGAFSLSGKAKQKLLKHGVNLL
Sbjct: 666 QQLAPAARSSGFPNPQDGAFSLSGKAKQKLLKHGVNLL 703
>gi|169214926 PREDICTED: similar to IQ motif and SEC7
domain-containing protein 3 [Homo sapiens]
Length = 185
Score = 37.4 bits (85), Expect = 0.048
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 413 EPTP---PEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPL 469
+P P P +A P +AP + AQE L+D S+ AP P D PR+ L
Sbjct: 63 QPPPGLVPPSSAPLPAAPATAPAAAAR--AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQL 120
Query: 470 L-LPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADG 524
L P+ PG R + + ++ L + P C++ A Q PSA G
Sbjct: 121 LEQPQRGPGSRAHTPQSPQKHLGTQGAVTDKEKERPPSCCAAAGALLQHKSPSALG 176
>gi|113428915 PREDICTED: similar to IQ motif and SEC7
domain-containing protein 3 [Homo sapiens]
Length = 185
Score = 37.4 bits (85), Expect = 0.048
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 413 EPTP---PEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPL 469
+P P P +A P +AP + AQE L+D S+ AP P D PR+ L
Sbjct: 63 QPPPGLVPPSSAPLPAAPATAPAAAAR--AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQL 120
Query: 470 L-LPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADG 524
L P+ PG R + + ++ L + P C++ A Q PSA G
Sbjct: 121 LEQPQRGPGSRAHTPQSPQKHLGTQGAVTDKEKERPPSCCAAAGALLQHKSPSALG 176
>gi|190358543 hypothetical protein LOC57654 [Homo sapiens]
Length = 709
Score = 37.4 bits (85), Expect = 0.048
Identities = 36/124 (29%), Positives = 48/124 (38%), Gaps = 25/124 (20%)
Query: 389 FLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSLR-----------PPSAPEMLTQH 437
F+ VP +G P+ L LE P +DT + LR P SA L
Sbjct: 408 FVEVPEKEGYEPHIPDHLRPEYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQL--- 464
Query: 438 GAQEQLEDHPGHSSQAPIPRADPLPR--------RTRRPLLLPRLDPGQRGNKLPTGEQG 489
QL DH S A RA P P+ R R P++ +D G +LPT +
Sbjct: 465 ---RQLRDHLPPPSSASPSRALPEPQEAQKLAAERARAPVVPYGVDLHYWGQELPTAGKI 521
Query: 490 LDED 493
+ D
Sbjct: 522 VKSD 525
>gi|169217823 PREDICTED: similar to IQ motif and SEC7
domain-containing protein 3 [Homo sapiens]
Length = 185
Score = 36.6 bits (83), Expect = 0.082
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 413 EPTP---PEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPL 469
+P P P +A P +AP + AQE L+D S+ AP P D PR+ L
Sbjct: 63 QPPPGLVPPSSAPLPAAPATAPAAAAR--AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQL 120
Query: 470 L-LPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADG 524
L P+ PG R + + + L + P C++ A Q PSA G
Sbjct: 121 LEQPQRGPGSRAHTPQSPHKHLGTQGAVTDKEKERPPSCCAAAGALLQHKSPSALG 176
>gi|113431383 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 36.6 bits (83), Expect = 0.082
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 413 EPTP---PEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPL 469
+P P P +A P +AP + AQE L+D S+ AP P D PR+ L
Sbjct: 63 QPPPGLVPPSSAPLPAAPATAPAAAAR--AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQL 120
Query: 470 L-LPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADG 524
L P+ PG R + + + L + P C++ A Q PSA G
Sbjct: 121 LEQPQRGPGSRAHTPQSPHKHLGTQGAVTDKEKERPPSCCAAAGALLQHKSPSALG 176
>gi|239744532 PREDICTED: hypothetical protein XP_002343185 [Homo
sapiens]
Length = 185
Score = 36.6 bits (83), Expect = 0.082
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 413 EPTP---PEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPL 469
+P P P +A P +AP + AQE L+D S+ AP P D PR+ L
Sbjct: 63 QPPPGLVPPSSAPLPAAPATAPAAAAR--AQEPLQDQGQRSAAAPHPAPDRPPRQHHGQL 120
Query: 470 L-LPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADG 524
L P+ PG R + + + L + P C++ A Q PSA G
Sbjct: 121 LEQPQRGPGSRAHTPQSPHKHLGTQGAVTDKEKERPPSCCAAAGALLQHKSPSALG 176
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 36.6 bits (83), Expect = 0.082
Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 14/171 (8%)
Query: 363 LQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAI 422
L +L ++ + + Q+ + + P P +AP S S L+PTPP+
Sbjct: 175 LNSQLQQLQLQLQQQQQQQQQQPPPSTNQHPQPAPQAP----SQSQQQPLQPTPPQQPPP 230
Query: 423 SSLRPPSAPEMLTQHGAQEQLEDHPGHSSQ-APIPRADPLPRRTRRPLLLPRLDPGQRGN 481
+S +PP+ L Q +Q + H +Q P P +++ P P PG G
Sbjct: 231 ASQQPPAPTSQLQQAPQPQQHQPHSHSQNQNQPSP-----TQQSSSPPQKPSQSPG-HGL 284
Query: 482 KLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAG---PSADGISSRL 529
P + V+ S AA S A+ Q G S G++ +L
Sbjct: 285 PSPLTPPNPLQLVNNPLASQAAAAAAAMSSIASSQAFGNALSSLQGVTGQL 335
>gi|239748340 PREDICTED: hypothetical protein XP_002346633 [Homo
sapiens]
Length = 465
Score = 35.8 bits (81), Expect = 0.14
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 389 FLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSA--PEMLTQHGAQEQLEDH 446
F+ VP +G P+ L LE P +DT + LR + E+ A QL
Sbjct: 200 FVEVPEKEGYEPHIPDHLRPEYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQLRQL 259
Query: 447 PG---HSSQAPIPRADPLPR--------RTRRPLLLPRLDPGQRGNKLPTGEQGLDED 493
PG S A RA P P+ R R P++ +D G +LPT + + D
Sbjct: 260 PGPLASPSSASPSRALPEPQEAQKLAAERARAPVVPYGVDLHYWGQELPTAGKIVKSD 317
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 35.8 bits (81), Expect = 0.14
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 11/183 (6%)
Query: 286 KGGSTSALKENATGHVESMAWTTPDPTSPDEACPDGRKENGCLSGHDL---ESIRPAGLH 342
K +TS+ + + + ES + ++P +S DE R+E ++ ES+ AG
Sbjct: 1106 KAEATSSSESSESSEFESSSESSPS-SSEDEEEVVAREEEEEEEEEEMVAEESMASAGPE 1164
Query: 343 NSAR-GEVLGLSSSL-GKELVFLQEELDLSEIHIPEAQEVEMASGHFAFLHVPVP-DGRA 399
+ + GE L+ + + ++EE+D+ + + M + V P D R
Sbjct: 1165 DFEQDGEEAALAPGAPAVDSLGMEEEVDIETEAVAPEERPSMLDEPPLPVGVEEPADSRE 1224
Query: 400 PYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRAD 459
P + LS ++ +P RPP +PE +H LE P P+P
Sbjct: 1225 PPEEPGLSQEGAMLLSPEPPAKEVEARPPLSPERAPEH----DLEVEPEPPMMLPLPLQP 1280
Query: 460 PLP 462
PLP
Sbjct: 1281 PLP 1283
>gi|27436984 potassium voltage-gated channel, Shal-related
subfamily, member 3 isoform 1 [Homo sapiens]
Length = 655
Score = 35.4 bits (80), Expect = 0.18
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 363 LQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLE-PTPPEDTA 421
L+ +LS IHI +++ + + + L++ DG P CK S ++ + PTPP T
Sbjct: 567 LRSMQELSTIHIQGSEQPSLTTSRSS-LNLKADDGLRPNCKTSQITTAIISIPTPPALTP 625
Query: 422 ISSLRPPSA 430
RPP A
Sbjct: 626 EGESRPPPA 634
>gi|27436986 potassium voltage-gated channel, Shal-related
subfamily, member 3 isoform 2 [Homo sapiens]
Length = 636
Score = 35.4 bits (80), Expect = 0.18
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 363 LQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLE-PTPPEDTA 421
L+ +LS IHI +++ + + + L++ DG P CK S ++ + PTPP T
Sbjct: 548 LRSMQELSTIHIQGSEQPSLTTSRSS-LNLKADDGLRPNCKTSQITTAIISIPTPPALTP 606
Query: 422 ISSLRPPSA 430
RPP A
Sbjct: 607 EGESRPPPA 615
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 35.0 bits (79), Expect = 0.24
Identities = 57/255 (22%), Positives = 88/255 (34%), Gaps = 35/255 (13%)
Query: 283 HHPKGGSTSALKENATGHVESMAWTTPDPTSPDEACPDGRKENGCLSGHDLESIRPAGLH 342
H+ G S L+ V+ A P P +P P G+ +G S +P
Sbjct: 619 HNAAGPSPHTLRRA----VKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRS 674
Query: 343 NSA----RGEVLGLSSSLGKELVFLQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGR 398
S G+ G S+ + + LS I P + + +H P+ +
Sbjct: 675 PSPPTQHTGQPPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMHTK-PNSQ 733
Query: 399 APYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQH-----------GAQEQLEDHP 447
P +L + LE P T + PPS P + Q+ G E + H
Sbjct: 734 GPPNPMALPSEHGLEQ--PSHTPPQTPTPPSTPPLGKQNPSLPAPQTLAGGNPETAQPHA 791
Query: 448 GHSSQAPIPRADPLPRRTRRPLLLPRLDP--------GQRGNKLPTGEQGLDEDVDGVCE 499
G +PR P+P+ RP + P P N PT + + + V E
Sbjct: 792 G-----TLPRPRPVPKPRNRPSVPPPPQPPGVHSAGDSSLTNTAPTASKIVTDSNSRVSE 846
Query: 500 SHAAPGLECSSGSAN 514
H + E S SA+
Sbjct: 847 PHRSIFPEMHSDSAS 861
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 35.0 bits (79), Expect = 0.24
Identities = 57/255 (22%), Positives = 88/255 (34%), Gaps = 35/255 (13%)
Query: 283 HHPKGGSTSALKENATGHVESMAWTTPDPTSPDEACPDGRKENGCLSGHDLESIRPAGLH 342
H+ G S L+ V+ A P P +P P G+ +G S +P
Sbjct: 541 HNAAGPSPHTLRRA----VKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRS 596
Query: 343 NSA----RGEVLGLSSSLGKELVFLQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGR 398
S G+ G S+ + + LS I P + + +H P+ +
Sbjct: 597 PSPPTQHTGQPPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMHTK-PNSQ 655
Query: 399 APYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQH-----------GAQEQLEDHP 447
P +L + LE P T + PPS P + Q+ G E + H
Sbjct: 656 GPPNPMALPSEHGLEQ--PSHTPPQTPTPPSTPPLGKQNPSLPAPQTLAGGNPETAQPHA 713
Query: 448 GHSSQAPIPRADPLPRRTRRPLLLPRLDP--------GQRGNKLPTGEQGLDEDVDGVCE 499
G +PR P+P+ RP + P P N PT + + + V E
Sbjct: 714 G-----TLPRPRPVPKPRNRPSVPPPPQPPGVHSAGDSSLTNTAPTASKIVTDSNSRVSE 768
Query: 500 SHAAPGLECSSGSAN 514
H + E S SA+
Sbjct: 769 PHRSIFPEMHSDSAS 783
>gi|19882241 immunoglobulin superfamily, DCC subclass, member 4 [Homo
sapiens]
Length = 1250
Score = 34.7 bits (78), Expect = 0.31
Identities = 66/269 (24%), Positives = 102/269 (37%), Gaps = 28/269 (10%)
Query: 331 HDLESIRPAGLHNSARGEVLGLSSSLGKELVFLQEEL-DLSEIHIPEAQEVEMASGHFAF 389
H LES AR EV S ++++ LQE+L D ++H V + G
Sbjct: 911 HGLESDTRYFFKMGARTEVGPGPFSRLQDVITLQEKLSDSLDMHSVTGIIVGVCLGLLCL 970
Query: 390 LHVPVPD-GRAPYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPG 448
L R+P+ ++ SS+ P P + + L PPS P H + + HP
Sbjct: 971 LACMCAGLRRSPHRESLPGLSSTATPGNPALYSRARLGPPSPP---AAHELESLVHPHPQ 1027
Query: 449 HSSQAPIPRADPLPRRTRRPLLLPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAP-GLE 507
S P +D R L+ + G+ +K S A P GL
Sbjct: 1028 DWSPPP---SDVEDRAEVHSLMGGGVSEGRSHSKRKI--------------SWAQPSGLS 1070
Query: 508 CSSGSANCQ--GAGPSADGISSRLTPAESCMGLVRMNLYTHCVKGLVLSLLAEEPLLGDS 565
+ A C+ AGP + L PA + L+ L +KG P +
Sbjct: 1071 WAGSWAGCELPQAGPRPALTRALLPPAGTGQTLLLQALVYDAIKG--NGRKKSPPACRNQ 1128
Query: 566 AAIEEVYHSSLASLNG-LEVHLKETLPRD 593
E + HS ++ NG ++HL++ P D
Sbjct: 1129 VEAEVIVHSDFSASNGNPDLHLQDLEPED 1157
>gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 33.9 bits (76), Expect = 0.53
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 387 FAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDH 446
F+ H + +G C + S P PP L PP P TQ +
Sbjct: 161 FSSRHSSISEGEGDRCGFAEPPGGSSPPAPP-------LPPPPKPGSPTQRAREASSWKP 213
Query: 447 PGHSSQAPIPRADPLPRRTRRPL 469
PGHS AP R T+RPL
Sbjct: 214 PGHSHTAPPGRG------TQRPL 230
>gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens]
Length = 930
Score = 33.9 bits (76), Expect = 0.53
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 25/109 (22%)
Query: 425 LRPPSAPEMLTQHGAQ------------EQLEDHPGHSSQAPIPRADPLPRRTRRP---- 468
L+P M+ QHG E+LE+ PG S +P A PLP P
Sbjct: 403 LQPGLVNHMVVQHGLPGPDSQSAGLFKTERLEEFPG--STVDLPPAPPLPPLPPPPGPPP 460
Query: 469 -------LLLPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLECSS 510
L P L P + LP D ++DG+ H ++CS+
Sbjct: 461 PYHAHAHLHHPELGPHAQQLALPQATLDDDGEMDGIGGKHCCRWIDCSA 509
>gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens]
Length = 775
Score = 33.9 bits (76), Expect = 0.53
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 25/109 (22%)
Query: 425 LRPPSAPEMLTQHGAQ------------EQLEDHPGHSSQAPIPRADPLPRRTRRP---- 468
L+P M+ QHG E+LE+ PG S +P A PLP P
Sbjct: 248 LQPGLVNHMVVQHGLPGPDSQSAGLFKTERLEEFPG--STVDLPPAPPLPPLPPPPGPPP 305
Query: 469 -------LLLPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLECSS 510
L P L P + LP D ++DG+ H ++CS+
Sbjct: 306 PYHAHAHLHHPELGPHAQQLALPQATLDDDGEMDGIGGKHCCRWIDCSA 354
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 33.5 bits (75), Expect = 0.70
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 24/152 (15%)
Query: 399 APYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAP-IPR 457
AP K SL S PTP + +++ P S+P Q + P P+
Sbjct: 401 APQMK-SLQGGPSRVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGPRPPQ 459
Query: 458 ADPLPRRTRRPLLLPRLDP-GQRGNKLPT-----------GEQGLDEDVDGVCESHAAPG 505
+PLP+ ++P+ P +P Q+GN P G Q L + G+ PG
Sbjct: 460 NNPLPQGFQQPVSSPGRNPMVQQGNVPPNFMVMQQQPPNQGPQSLHPGLGGM-PKRLPPG 518
Query: 506 LECSSGSAN---CQGAGPSADGISSRLTPAES 534
S+G AN QG PS ++ TP S
Sbjct: 519 F--SAGQANPNFMQGQVPS----TTATTPGNS 544
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 33.5 bits (75), Expect = 0.70
Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 14/109 (12%)
Query: 393 PVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQ 452
P PD A + SAS S +P A RP S + + G +S
Sbjct: 1125 PAPDVPADTTASPPSASPS-SSSPASPAAAGHTRPSSLHGLAAKLGPPRPKTGRRKSTSS 1183
Query: 453 ------------APIPRA-DPLPRRTRRPLLLPRLDPGQRGNKLPTGEQ 488
AP PR+ PLP P PRL GQ +KL TGE+
Sbjct: 1184 IPPSPLACPPISAPPPRSPSPLPGHPPAPARSPRLRRGQSADKLGTGER 1232
>gi|4503615 even-skipped homeobox 1 [Homo sapiens]
Length = 407
Score = 33.5 bits (75), Expect = 0.70
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 456 PRADPLPRRTRRPLLLPRLDPGQRGNKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANC 515
P +P + R L PR P + G + +E VDG+ S A PG E A
Sbjct: 34 PLPEPPEKMVPRGCLSPRAVPPATRERGGGGPE--EEPVDGLAGSAAGPGAEPQVAGAAM 91
Query: 516 QGAG---PSADGISSRLTPAES 534
G G PS D +S + P+ S
Sbjct: 92 LGPGPPAPSVDSLSGQGQPSSS 113
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 33.1 bits (74), Expect = 0.91
Identities = 55/268 (20%), Positives = 96/268 (35%), Gaps = 38/268 (14%)
Query: 199 LIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALP-PNVQ-----IIPVFVTK 252
L+ S++ S T +L E +E +A+P P V ++ VT
Sbjct: 10881 LVTSSRAVISTTIPILTLSPGEPETTPSMATSHGEEASSAIPTPTVSPGVPGVVTSLVTS 10940
Query: 253 EEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGS-------------TSALKENATG 299
A++ P+ +T SL P + H + GS TS + +
Sbjct: 10941 SRAVTSTTIPI--LTFSLGEPETTPSMATSHGTEAGSAVPTVLPEVPGMVTSLVASSRAV 10998
Query: 300 HVESMAWTTPDPTSPDEACPDGRKENGCLSGHDLESIRPA--GLHNSARGEVLGLSSSLG 357
++ T P P E P +G + + ++ P G+ S G++S+
Sbjct: 10999 TSTTLPTLTLSPGEP-ETTPSMATSHGAEASSTVPTVSPEVPGVVTSLVTSSSGVNSTSI 11057
Query: 358 KELVFLQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPD-----GRAPYCKASLSASSSL 412
L+ EL+ + MA+ H A VP G + +++S ++
Sbjct: 11058 PTLILSPGELETTP---------SMATSHGAEASSAVPTPTVSPGVSGVVTPLVTSSRAV 11108
Query: 413 EPTPPEDTAISSLRPPSAPEMLTQHGAQ 440
T +SS P + P M T HG +
Sbjct: 11109 TSTTIPILTLSSSEPETTPSMATSHGVE 11136
>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
Length = 1271
Score = 33.1 bits (74), Expect = 0.91
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 8/104 (7%)
Query: 393 PVPDGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQ 452
P P AP L + +S EP P L P PE ++ + E P +++
Sbjct: 32 PPPPPPAPPPAPPLLSEASPEPIPEP---CPELAPGPCPEATSESATELYTEPTPEPATE 88
Query: 453 -----APIPRADPLPRRTRRPLLLPRLDPGQRGNKLPTGEQGLD 491
AP P +P P P P +P PT E L+
Sbjct: 89 PASEPAPEPATEPAPEPATEPAPEPAPEPATESAPEPTPEPALE 132
>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
sapiens]
Length = 603
Score = 32.7 bits (73), Expect = 1.2
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 396 DGRAPYCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPI 455
D C+ASL+ +S+EP E SS P+A +L G + ++HPG S +
Sbjct: 533 DKHGDLCEASLT--NSVEPAQGEAREGSSQDNPTAQPVLQLLGEMQDHQEHPGLGSNCCV 590
Query: 456 PRA--DPLPRRTR 466
P LPRR R
Sbjct: 591 PCFCWAWLPRRRR 603
>gi|169166894 PREDICTED: hypothetical protein [Homo sapiens]
Length = 145
Score = 32.7 bits (73), Expect = 1.2
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 413 EPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQA-PIPRADPLPRRTRRP 468
E D +ISS PP+ P++ + G E+L D+ ++A P A LPR R P
Sbjct: 20 EKLASSDDSISSAIPPTRPKLRRRKGDTERLRDYATARARAQPASSAAQLPRSHRPP 76
>gi|169166324 PREDICTED: hypothetical protein [Homo sapiens]
Length = 145
Score = 32.7 bits (73), Expect = 1.2
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 413 EPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQA-PIPRADPLPRRTRRP 468
E D +ISS PP+ P++ + G E+L D+ ++A P A LPR R P
Sbjct: 20 EKLASSDDSISSAIPPTRPKLRRRKGDTERLRDYATARARAQPASSAAQLPRSHRPP 76
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 32.7 bits (73), Expect = 1.2
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 375 PEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASS---SLEPTPPEDTAISSLRPPSAP 431
P Q ++SG L +P P C L+ ++ L PT P SS P P
Sbjct: 748 PALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCP 807
Query: 432 EMLTQHGAQEQLE--DHPGHSSQAPIPRADPL 461
L+ AQ L S +PIP +PL
Sbjct: 808 SPLSNATAQSPLPILSPTVSPSPSPIPPVEPL 839
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 32.7 bits (73), Expect = 1.2
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 375 PEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASS---SLEPTPPEDTAISSLRPPSAP 431
P Q ++SG L +P P C L+ ++ L PT P SS P P
Sbjct: 949 PALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCP 1008
Query: 432 EMLTQHGAQEQLE--DHPGHSSQAPIPRADPL 461
L+ AQ L S +PIP +PL
Sbjct: 1009 SPLSNATAQSPLPILSPTVSPSPSPIPPVEPL 1040
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 32.7 bits (73), Expect = 1.2
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 375 PEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASS---SLEPTPPEDTAISSLRPPSAP 431
P Q ++SG L +P P C L+ ++ L PT P SS P P
Sbjct: 949 PALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCP 1008
Query: 432 EMLTQHGAQEQLE--DHPGHSSQAPIPRADPL 461
L+ AQ L S +PIP +PL
Sbjct: 1009 SPLSNATAQSPLPILSPTVSPSPSPIPPVEPL 1040
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,525,984
Number of Sequences: 37866
Number of extensions: 1593228
Number of successful extensions: 6041
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 5894
Number of HSP's gapped (non-prelim): 310
length of query: 708
length of database: 18,247,518
effective HSP length: 109
effective length of query: 599
effective length of database: 14,120,124
effective search space: 8457954276
effective search space used: 8457954276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.