| Name: RTL1 | Sequence: fasta or formatted (1358aa) | NCBI GI: 199562283 | |
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Description: retrotransposon-like 1
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Referenced in: DNA Transposon and Retrovirus-related Sequences
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 6.8 93 2 C cysteine 1.3 17 2 D aspartate 5.0 68 2 E glutamate 9.4 128 3 F phenylalanine 4.5 61 3 G glycine 4.9 67 2 H histidine 3.5 48 2 I isoleucine 4.6 62 2 K lysine 2.4 33 2 L leucine 11.7 159 3 M methionine 2.5 34 2 N asparagine 3.3 45 2 P proline 7.2 98 4 Q glutamine 6.3 85 2 R arginine 6.7 91 2 S serine 7.0 95 2 T threonine 3.7 50 2 V valine 5.2 71 2 W tryptophan 1.5 20 1 Y tyrosine 2.4 33 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 retrotransposon-like 1 PEG10 0.052 paternally expressed 10 isoform RF1/2 PEG10 0.025 paternally expressed 10 isoform RF1 RGAG4 0.022 retrotransposon gag domain containing 4 ZCCHC5 0.014 zinc finger, CCHC domain containing 5 FAM127B 0.012 family with sequence similarity 127, member B isofo... FAM127C 0.012 family with sequence similarity 127, member C [Homo... LDOC1 0.012 leucine zipper, down-regulated in cancer 1 LOC100292719 0.012 PREDICTED: similar to Family with sequence similari... FAM127A 0.011 family with sequence similarity 127, member A [Homo... KIAA1305 0.010 hypothetical protein LOC57523 RGAG1 0.009 retrotransposon gag domain containing 1 LOC100129323 0.007 PREDICTED: similar to pro-pol protein LOC100129323 0.007 PREDICTED: similar to pro-pol protein SRRM2 0.007 splicing coactivator subunit SRm300 CHGA 0.006 chromogranin A precursor GON4L 0.005 gon-4-like isoform a NEFH 0.005 neurofilament, heavy polypeptide 200kDa LDOC1L 0.005 leucine zipper, down-regulated in cancer 1-like [Hom... NASP 0.005 nuclear autoantigenic sperm protein isoform 2 NASP 0.005 nuclear autoantigenic sperm protein isoform 1 HTATSF1 0.005 HIV-1 Tat specific factor 1 HTATSF1 0.005 HIV-1 Tat specific factor 1 KIAA0141 0.005 hypothetical protein LOC9812 KIAA0141 0.005 hypothetical protein LOC9812 SMARCC2 0.005 SWI/SNF-related matrix-associated actin-dependent re... SMARCC2 0.005 SWI/SNF-related matrix-associated actin-dependent re... SMARCC2 0.005 SWI/SNF-related matrix-associated actin-dependent r... TCOF1 0.005 Treacher Collins-Franceschetti syndrome 1 isoform d... TCOF1 0.005 Treacher Collins-Franceschetti syndrome 1 isoform b ...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
