Guide to the Human Genome
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Name: FAM127A Sequence: fasta or formatted (113aa) NCBI GI: 118200335
Description:

family with sequence similarity 127, member A

Referenced in:

NF-kappaB Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3          6           1
 C cysteine            0.0          0           0
 D aspartate           8.0          9           1
 E glutamate           7.1          8           2
 F phenylalanine       8.0          9           1
 G glycine             5.3          6           1
 H histidine           0.0          0           0
 I isoleucine          6.2          7           1
 K lysine              4.4          5           2
 L leucine            10.6         12           2
 M methionine          2.7          3           1
 N asparagine          2.7          3           1
 P proline             8.0          9           1
 Q glutamine           2.7          3           1
 R arginine            8.0          9           2
 S serine              3.5          4           2
 T threonine           7.1          8           1
 V valine              5.3          6           1
 W tryptophan          2.7          3           1
 Y tyrosine            2.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 127, member A [Homo... 
FAM127B               0.943   family with sequence similarity 127, member B isofo...
LOC100292719          0.938   PREDICTED: similar to Family with sequence similari...
FAM127C               0.938   family with sequence similarity 127, member C [Homo...
LDOC1                 0.505   leucine zipper, down-regulated in cancer 1 
FAM127B               0.467   family with sequence similarity 127, member B isofo...
LDOC1L                0.262   leucine zipper, down-regulated in cancer 1-like [Hom...
PEG10                 0.157   paternally expressed 10 isoform RF1 
PEG10                 0.157   paternally expressed 10 isoform RF1/2 
RTL1                  0.143   retrotransposon-like 1 
C22orf29              0.138   hypothetical protein LOC79680 
ZCCHC5                0.124   zinc finger, CCHC domain containing 5 
RGAG4                 0.114   retrotransposon gag domain containing 4 
RGAG1                 0.010   retrotransposon gag domain containing 1 
CSMD1                 0.005   CUB and Sushi multiple domains 1 
OASL                  0.005   2'-5'-oligoadenylate synthetase-like isoform a [Homo...
DHTKD1                0.005   dehydrogenase E1 and transketolase domain containing...
DHRSX                 0.005   dehydrogenase/reductase (SDR family) X-linked [Homo...
TMED5                 0.005   transmembrane emp24 protein transport domain contain...
GLT8D4                0.005   glycosyltransferase 8 domain containing 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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