Guide to the Human Genome
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Name: ARRDC1 Sequence: fasta or formatted (433aa) NCBI GI: 22748653
Description:

arrestin domain containing 1

Referenced in:

Glutathione Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         41           3
 C cysteine            1.6          7           1
 D aspartate           2.5         11           1
 E glutamate           5.3         23           2
 F phenylalanine       3.5         15           1
 G glycine             7.9         34           2
 H histidine           3.2         14           1
 I isoleucine          3.9         17           1
 K lysine              3.7         16           2
 L leucine             9.5         41           2
 M methionine          0.2          1           1
 N asparagine          2.1          9           1
 P proline            11.5         50           2
 Q glutamine           3.9         17           1
 R arginine            3.5         15           2
 S serine             10.2         44           2
 T threonine           5.1         22           2
 V valine              8.8         38           2
 W tryptophan          1.2          5           1
 Y tyrosine            3.0         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   arrestin domain containing 1 
ARRDC2                0.100   arrestin domain containing 2 isoform 2 
ARRDC2                0.089   arrestin domain containing 2 isoform 1 
ARRDC4                0.086   arrestin domain containing 4 
ARRDC3                0.084   arrestin domain containing 3 
TXNIP                 0.067   thioredoxin interacting protein 
ARRDC5                0.037   arrestin domain containing 5 
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
MLL2                  0.020   myeloid/lymphoid or mixed-lineage leukemia 2 
WIPF3                 0.020   WAS/WASL interacting protein family, member 3 [Homo...
YLPM1                 0.020   YLP motif containing 1 
CASKIN1               0.019   CASK interacting protein 1 
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.018   PREDICTED: hypothetical protein LOC80164 
CPSF6                 0.018   cleavage and polyadenylation specific factor 6, 68 ...
LIMD1                 0.016   LIM domains containing 1 
ARRB2                 0.016   arrestin, beta 2 isoform 2 
ARRB2                 0.016   arrestin, beta 2 isoform 1 
PODXL2                0.016   podocalyxin-like 2 
IRS2                  0.015   insulin receptor substrate 2 
CUX2                  0.015   cut-like 2 
RERE                  0.015   atrophin-1 like protein isoform b 
RERE                  0.015   atrophin-1 like protein isoform a 
RERE                  0.015   atrophin-1 like protein isoform a 
SOBP                  0.015   sine oculis binding protein homolog 
SMARCC2               0.014   SWI/SNF-related matrix-associated actin-dependent re...
TAF4                  0.014   TBP-associated factor 4 
RP1L1                 0.014   retinitis pigmentosa 1-like 1 
SMARCC2               0.014   SWI/SNF-related matrix-associated actin-dependent re...
NACA                  0.014   nascent polypeptide-associated complex alpha subuni...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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