Guide to the Human Genome
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Name: ARRDC5 Sequence: fasta or formatted (342aa) NCBI GI: 122937478
Description:

arrestin domain containing 5

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         15           1
 C cysteine            2.6          9           2
 D aspartate           3.5         12           1
 E glutamate           7.0         24           2
 F phenylalanine       5.0         17           1
 G glycine             4.4         15           1
 H histidine           2.9         10           1
 I isoleucine          4.7         16           3
 K lysine              5.0         17           2
 L leucine             8.8         30           3
 M methionine          1.8          6           1
 N asparagine          4.7         16           2
 P proline             5.6         19           2
 Q glutamine           4.1         14           1
 R arginine            4.4         15           2
 S serine              9.4         32           3
 T threonine           8.8         30           2
 V valine              9.4         32           2
 W tryptophan          0.9          3           1
 Y tyrosine            2.9         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   arrestin domain containing 5 
ARRDC2                0.073   arrestin domain containing 2 isoform 1 
ARRDC3                0.061   arrestin domain containing 3 
ARRDC4                0.052   arrestin domain containing 4 
ARRDC2                0.049   arrestin domain containing 2 isoform 2 
ARRDC1                0.048   arrestin domain containing 1 
TXNIP                 0.030   thioredoxin interacting protein 
ARRB1                 0.018   arrestin beta 1 isoform A 
ARRB1                 0.018   arrestin beta 1 isoform B 
ARRB2                 0.007   arrestin, beta 2 isoform 2 
ARRB2                 0.007   arrestin, beta 2 isoform 1 
LOC100291851          0.007   PREDICTED: similar to Putative ubiquitin-like prote...
LOC100290696          0.007   PREDICTED: hypothetical protein XP_002347291 
MAP3K7IP2             0.007   mitogen-activated protein kinase kinase kinase 7 int...
HEG1                  0.006   HEG homolog 1 
SYNE2                 0.006   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.006   spectrin repeat containing, nuclear envelope 2 isof...
ASXL3                 0.006   additional sex combs like 3 
THBS1                 0.004   thrombospondin 1 precursor 
MAP1S                 0.004   BPY2 interacting protein 1 
NAT12                 0.004   N-acetyltransferase 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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