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Search of human proteins with 22538488
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22538488 Smith-Magenis syndrome chromosome region, candidate
7 isoform 1 [Homo sapiens]
(454 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|222080058 Smith-Magenis syndrome chromosome region, candidate... 900 0.0
gi|22538488 Smith-Magenis syndrome chromosome region, candidate ... 900 0.0
gi|22129774 hypothetical protein LOC54471 [Homo sapiens] 358 4e-99
gi|222080060 Smith-Magenis syndrome chromosome region, candidate... 203 3e-52
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 40 0.003
gi|186928844 Cdc42 GTPase-activating protein [Homo sapiens] 39 0.007
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 36 0.082
gi|223890225 POU class 6 homeobox 1 [Homo sapiens] 35 0.18
gi|57863314 vacuolar protein sorting 37C [Homo sapiens] 35 0.18
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 34 0.24
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 34 0.24
gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ... 34 0.24
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 34 0.24
gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo ... 34 0.24
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 34 0.24
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 34 0.31
gi|153792074 proline rich 12 [Homo sapiens] 34 0.31
gi|29826321 adducin 1 (alpha) isoform b [Homo sapiens] 33 0.41
gi|29826319 adducin 1 (alpha) isoform a [Homo sapiens] 33 0.41
gi|169191513 PREDICTED: hypothetical protein isoform 1 [Homo sap... 33 0.41
gi|239743587 PREDICTED: hypothetical protein [Homo sapiens] 33 0.41
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 33 0.41
gi|57528101 hypothetical protein LOC728130 [Homo sapiens] 33 0.41
gi|9966885 tumor endothelial marker 1 precursor [Homo sapiens] 33 0.41
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 33 0.41
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 33 0.41
gi|150170710 hypothetical protein LOC728118 [Homo sapiens] 33 0.41
gi|239753975 PREDICTED: hypothetical protein [Homo sapiens] 33 0.53
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int... 33 0.70
gi|238859557 regulatory factor X1 [Homo sapiens] 33 0.70
>gi|222080058 Smith-Magenis syndrome chromosome region, candidate 7
isoform 2 [Homo sapiens]
Length = 465
Score = 900 bits (2325), Expect = 0.0
Identities = 454/454 (100%), Positives = 454/454 (100%)
Query: 1 MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE 60
MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE
Sbjct: 12 MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE 71
Query: 61 DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSP 120
DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSP
Sbjct: 72 DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSP 131
Query: 121 APLCLTLQERLLAFERDRVTIPAAQVALAKQLAGDIALELQAYFRSKFPELPFGAFVPGG 180
APLCLTLQERLLAFERDRVTIPAAQVALAKQLAGDIALELQAYFRSKFPELPFGAFVPGG
Sbjct: 132 APLCLTLQERLLAFERDRVTIPAAQVALAKQLAGDIALELQAYFRSKFPELPFGAFVPGG 191
Query: 181 PLYDGLQAGAADHVRLLVPLVLEPGLWSLVPGVDTVARDPRCWAVRRTQLEFCPRGSSPW 240
PLYDGLQAGAADHVRLLVPLVLEPGLWSLVPGVDTVARDPRCWAVRRTQLEFCPRGSSPW
Sbjct: 192 PLYDGLQAGAADHVRLLVPLVLEPGLWSLVPGVDTVARDPRCWAVRRTQLEFCPRGSSPW 251
Query: 241 DRFLVGGYLSSRVLLELLRKALAASVNWPAIGSLLGCLIRPSMASEELLLEVQHERLELT 300
DRFLVGGYLSSRVLLELLRKALAASVNWPAIGSLLGCLIRPSMASEELLLEVQHERLELT
Sbjct: 252 DRFLVGGYLSSRVLLELLRKALAASVNWPAIGSLLGCLIRPSMASEELLLEVQHERLELT 311
Query: 301 VAVLVAVPGVDADDRLLLAWPLEGLAGNLWLQDLYPVEAARLRALDDHDAGTRRRLLLLL 360
VAVLVAVPGVDADDRLLLAWPLEGLAGNLWLQDLYPVEAARLRALDDHDAGTRRRLLLLL
Sbjct: 312 VAVLVAVPGVDADDRLLLAWPLEGLAGNLWLQDLYPVEAARLRALDDHDAGTRRRLLLLL 371
Query: 361 CAVCRGCSALGQLGRGHLTQVVLRLGEDNVDWTEEALGERFLQALELLIGSLEQASLPCH 420
CAVCRGCSALGQLGRGHLTQVVLRLGEDNVDWTEEALGERFLQALELLIGSLEQASLPCH
Sbjct: 372 CAVCRGCSALGQLGRGHLTQVVLRLGEDNVDWTEEALGERFLQALELLIGSLEQASLPCH 431
Query: 421 FNPSVNLFSSLREEEIDDIGYALYSGLQEPEGLL 454
FNPSVNLFSSLREEEIDDIGYALYSGLQEPEGLL
Sbjct: 432 FNPSVNLFSSLREEEIDDIGYALYSGLQEPEGLL 465
>gi|22538488 Smith-Magenis syndrome chromosome region, candidate 7
isoform 1 [Homo sapiens]
Length = 454
Score = 900 bits (2325), Expect = 0.0
Identities = 454/454 (100%), Positives = 454/454 (100%)
Query: 1 MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE 60
MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE
Sbjct: 1 MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE 60
Query: 61 DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSP 120
DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSP
Sbjct: 61 DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSP 120
Query: 121 APLCLTLQERLLAFERDRVTIPAAQVALAKQLAGDIALELQAYFRSKFPELPFGAFVPGG 180
APLCLTLQERLLAFERDRVTIPAAQVALAKQLAGDIALELQAYFRSKFPELPFGAFVPGG
Sbjct: 121 APLCLTLQERLLAFERDRVTIPAAQVALAKQLAGDIALELQAYFRSKFPELPFGAFVPGG 180
Query: 181 PLYDGLQAGAADHVRLLVPLVLEPGLWSLVPGVDTVARDPRCWAVRRTQLEFCPRGSSPW 240
PLYDGLQAGAADHVRLLVPLVLEPGLWSLVPGVDTVARDPRCWAVRRTQLEFCPRGSSPW
Sbjct: 181 PLYDGLQAGAADHVRLLVPLVLEPGLWSLVPGVDTVARDPRCWAVRRTQLEFCPRGSSPW 240
Query: 241 DRFLVGGYLSSRVLLELLRKALAASVNWPAIGSLLGCLIRPSMASEELLLEVQHERLELT 300
DRFLVGGYLSSRVLLELLRKALAASVNWPAIGSLLGCLIRPSMASEELLLEVQHERLELT
Sbjct: 241 DRFLVGGYLSSRVLLELLRKALAASVNWPAIGSLLGCLIRPSMASEELLLEVQHERLELT 300
Query: 301 VAVLVAVPGVDADDRLLLAWPLEGLAGNLWLQDLYPVEAARLRALDDHDAGTRRRLLLLL 360
VAVLVAVPGVDADDRLLLAWPLEGLAGNLWLQDLYPVEAARLRALDDHDAGTRRRLLLLL
Sbjct: 301 VAVLVAVPGVDADDRLLLAWPLEGLAGNLWLQDLYPVEAARLRALDDHDAGTRRRLLLLL 360
Query: 361 CAVCRGCSALGQLGRGHLTQVVLRLGEDNVDWTEEALGERFLQALELLIGSLEQASLPCH 420
CAVCRGCSALGQLGRGHLTQVVLRLGEDNVDWTEEALGERFLQALELLIGSLEQASLPCH
Sbjct: 361 CAVCRGCSALGQLGRGHLTQVVLRLGEDNVDWTEEALGERFLQALELLIGSLEQASLPCH 420
Query: 421 FNPSVNLFSSLREEEIDDIGYALYSGLQEPEGLL 454
FNPSVNLFSSLREEEIDDIGYALYSGLQEPEGLL
Sbjct: 421 FNPSVNLFSSLREEEIDDIGYALYSGLQEPEGLL 454
>gi|22129774 hypothetical protein LOC54471 [Homo sapiens]
Length = 463
Score = 358 bits (920), Expect = 4e-99
Identities = 213/466 (45%), Positives = 276/466 (59%), Gaps = 17/466 (3%)
Query: 1 MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRA----TS 56
MA +++GK+ D G+G+ +DF+L+NARLVLGVGGAA+LGIATLAVKR DRA TS
Sbjct: 1 MAGAGERKGKK-DDNGIGTAIDFVLSNARLVLGVGGAAMLGIATLAVKRMYDRAISAPTS 59
Query: 57 PRDEDDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQ 116
P + SW+E + + +P L R LS+ + L SS + P P
Sbjct: 60 PTRLSHSGKRSWEEPNWM-GSPRLLNRDMKTGLSRSLQTLPTDSSTFDTDTFCPPRPKPV 118
Query: 117 LSS------PAPLCLTLQERLLAFERDRVTIPAAQVALAKQLAGDIALELQAYFRSKFPE 170
+ L ++LQE+LL + R+R IPA + A AKQ A DI EL+++ R+K P+
Sbjct: 119 ARKGQVDLKKSRLRMSLQEKLLTYYRNRAAIPAGEQARAKQAAVDICAELRSFLRAKLPD 178
Query: 171 LPFGAFVPGGPLYDGLQAGAADHVRLLVPLVLEPGLWSLVPGVDTVARDPRCWAVRRTQL 230
+P G LYD LQ ADH++L+VPLVLE LWS +PG DT+ P + VRR
Sbjct: 179 MPLRDMYLSGSLYDDLQVVTADHIQLIVPLVLEQNLWSCIPGEDTIMNVPGFFLVRRENP 238
Query: 231 EFCPRGSSPWDRFLVGGYLSSRVLLELLRKALAASVNWPAIGSLLGCLIRPSMASEELLL 290
E+ PRGSS WDR +VGGYLS + + + K +A S+NWPAIGSLL +IRP+ E L L
Sbjct: 239 EYFPRGSSYWDRCVVGGYLSPKTVADTFEKVVAGSINWPAIGSLLDYVIRPAPPPEALTL 298
Query: 291 EVQHER-LELTVAVLVAVPGVDADDRLLLAWPLE-GLAGNLWLQDLYPVEAARLRALDDH 348
EVQ+ER L + L P V D +L+A P NLW L P E ARLRALD
Sbjct: 299 EVQYERDKHLFIDFL---PSVTLGDTVLVAKPHRLAQYDNLWRLSLRPAETARLRALDQA 355
Query: 349 DAGTRRRLLLLLCAVCRGCSALGQLGRGHLTQVVLRLGEDNVDWTEEALGERFLQALELL 408
D+G R L +L A+C+ ALG L LT V+L L ++ DW+ + L +RFLQAL L
Sbjct: 356 DSGCRSLCLKILKAICKSTPALGHLTASQLTNVILHLAQEEADWSPDMLADRFLQALRGL 415
Query: 409 IGSLEQASLPCHFNPSVNLFSSLREEEIDDIGYALYSGLQEPEGLL 454
I LE LP NP VNLF+ L EEID++GY LY L EPE LL
Sbjct: 416 ISYLEAGVLPSALNPKVNLFAELTPEEIDELGYTLYCSLSEPEVLL 461
>gi|222080060 Smith-Magenis syndrome chromosome region, candidate 7
isoform 3 [Homo sapiens]
Length = 205
Score = 203 bits (516), Expect = 3e-52
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE 60
MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE
Sbjct: 1 MAEFSQKRGKRRSDEGLGSMVDFLLANARLVLGVGGAAVLGIATLAVKRFIDRATSPRDE 60
Query: 61 DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAP 103
DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAP
Sbjct: 61 DDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAP 103
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 40.4 bits (93), Expect = 0.003
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 78 PHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSPAP 122
P L P PP A P+ P P +++P PA+ +PE P P P
Sbjct: 796 PPLPPPPPSGATPPPIAPTGPPTASPPVPAKEEPEELPAAPGPLP 840
>gi|186928844 Cdc42 GTPase-activating protein [Homo sapiens]
Length = 1444
Score = 39.3 bits (90), Expect = 0.007
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 59 DEDD-TKADSW----KELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDPEV 113
DEDD A W +EL ++++ L PPPA + P+ P+ SS P P+E P
Sbjct: 643 DEDDLANALIWPEIQQELKIIESEEELSSLPPPALKTSPIQPILESSLGPFIPSE-PPGS 701
Query: 114 TPQLSSPAPLCLTLQ 128
P S PAP+ L+
Sbjct: 702 LPCGSFPAPVSTPLE 716
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 35.8 bits (81), Expect = 0.082
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 29/136 (21%)
Query: 85 PPAALSQPVLPLAPSSSAPEGPAETDPEVTPQ-------------------LSSPAPLCL 125
PP+ ++P LPLA +SS P + P+ PQ SSP + +
Sbjct: 2375 PPSQGTKPALPLASTSSDPPQASTAQPQPQPQPPKQPQLIGRPPSASQTPVPSSPLQISM 2434
Query: 126 T-----LQERLLAFERDRVTI--PAAQVALAKQLAGDIALE---LQAYFRSKFPELPFGA 175
T L +LL ++ D+ T+ P ++ Q +A + L + F + ++P+
Sbjct: 2435 TSLQNSLPPQLLQYQCDQCTVAFPTLELWQEHQHMHFLAAQNQFLHSPFLERPMDMPYMI 2494
Query: 176 FVPGGPLYDGLQAGAA 191
F P PL G G++
Sbjct: 2495 FDPNNPLMTGQLLGSS 2510
Score = 30.4 bits (67), Expect = 3.5
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 76 ATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSPAP 122
++P P PPP P LP AP + GP + V+ L +P P
Sbjct: 1953 SSPETPPPPPP----PPPLPPAPPQPSSMGPVKIPNTVSTPLQAPPP 1995
>gi|223890225 POU class 6 homeobox 1 [Homo sapiens]
Length = 301
Score = 34.7 bits (78), Expect = 0.18
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 76 ATPHLQPRPPPAALSQPVLPLAPSSS--APEGPAETDPEVTPQLSSPAP 122
AT P PPP A+ +P P +P+ S P P T P+ ++SPAP
Sbjct: 57 ATLASSPLPPPVAVRKPSTPESPAKSEVQPIQPTPTVPQPAVVIASPAP 105
>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
Length = 355
Score = 34.7 bits (78), Expect = 0.18
Identities = 35/105 (33%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 81 QPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSPAPLCLTLQERLLAFERDRVT 140
QP+PP A P LP +PS S P GP T P PAP + Q + T
Sbjct: 193 QPQPPLAMPPYP-LPYSPSPSLPVGP--TAHGALP----PAPFPVVSQPSFYSGPLG-PT 244
Query: 141 IPAAQVALAKQLAGDIALELQAYFRSKFPELPFGAFVPGGPLYDG 185
PAAQ+ + + R +P P GA PG PL G
Sbjct: 245 YPAAQLGPRGAAGYSWSPQRSMPPRPGYPGTPMGASGPGYPLRGG 289
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 34.3 bits (77), Expect = 0.24
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 76 ATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAET-DPEVTPQLSSP 120
ATP LQ P P A P +PS+S P P T P+ P L++P
Sbjct: 524 ATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAP 569
Score = 30.0 bits (66), Expect = 4.5
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 76 ATPHLQP-RPPPAALSQPVLPLAPSSSAPEG-PAETDPEVTPQLSSPAPLCLTLQERLLA 133
ATP P R P+A P P PS P+G A P+VTP AP L LA
Sbjct: 246 ATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLA 305
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 34.3 bits (77), Expect = 0.24
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 76 ATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAET-DPEVTPQLSSP 120
ATP LQ P P A P +PS+S P P T P+ P L++P
Sbjct: 793 ATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAP 838
Score = 33.1 bits (74), Expect = 0.53
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 77 TPHLQ--PRPPPAALSQPVLPL-APSSSAPEGPAETDPEVTPQLSSP 120
TPHL+ P P P L P PL P P A P+ P L+SP
Sbjct: 555 TPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASP 601
Score = 32.3 bits (72), Expect = 0.91
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 76 ATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSPAPL 123
ATP Q PPP A +P +P +S P P+ T P P L + PL
Sbjct: 720 ATPPPQA-PPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPL 766
Score = 30.4 bits (67), Expect = 3.5
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 76 ATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSP 120
A P LQ PPA+L+ P L PS + P + P TP L +P
Sbjct: 519 APPSLQT--PPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETP 561
Score = 30.0 bits (66), Expect = 4.5
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 76 ATPHLQP-RPPPAALSQPVLPLAPSSSAPEG-PAETDPEVTPQLSSPAPLCLTLQERLLA 133
ATP P R P+A P P PS P+G A P+VTP AP L LA
Sbjct: 246 ATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLA 305
Score = 29.6 bits (65), Expect = 5.9
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 76 ATPHLQPRPPPAALSQPV-LPLAPSSSAPEGP-AETDPEVTPQLSSP 120
ATP PR PP + P+ +P +P +S P P A+ P+ P L++P
Sbjct: 751 ATP--PPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATP 795
>gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo
sapiens]
Length = 261
Score = 34.3 bits (77), Expect = 0.24
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 71 LSLLKATPHLQPRPPPAALSQP---------VLPLAPSSSAPEGPAETDPEVTP-QLSSP 120
L L+ P LQP PPP + +P P P+ S GP + P P P
Sbjct: 168 LMLMLMLPTLQPLPPPGSARRPRRGRAGRGGAAPAPPTGSMRAGPGPSSPSAAPTSHPPP 227
Query: 121 APLC 124
+P C
Sbjct: 228 SPAC 231
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 34.3 bits (77), Expect = 0.24
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 76 ATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAET-DPEVTPQLSSP 120
ATP LQ P P A P +PS+S P P T P+ P L++P
Sbjct: 485 ATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAP 530
Score = 30.0 bits (66), Expect = 4.5
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 76 ATPHLQP-RPPPAALSQPVLPLAPSSSAPEG-PAETDPEVTPQLSSPAPLCLTLQERLLA 133
ATP P R P+A P P PS P+G A P+VTP AP L LA
Sbjct: 237 ATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLA 296
>gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo
sapiens]
Length = 261
Score = 34.3 bits (77), Expect = 0.24
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 71 LSLLKATPHLQPRPPPAALSQP---------VLPLAPSSSAPEGPAETDPEVTP-QLSSP 120
L L+ P LQP PPP + +P P P+ S GP + P P P
Sbjct: 168 LMLMLMLPTLQPLPPPGSARRPRRGRAGRGGAAPAPPTGSMRAGPGPSSPSAAPTSHPPP 227
Query: 121 APLC 124
+P C
Sbjct: 228 SPAC 231
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 34.3 bits (77), Expect = 0.24
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 78 PHLQPRPPPAALSQPVLP-LAPSSSAPEGPAETDPEVTPQLSSPAPL 123
P P PPP L P +P P+ S P GP + P P + PAP+
Sbjct: 248 PESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLPPP-APGVHPPAPV 293
Score = 30.4 bits (67), Expect = 3.5
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 13/64 (20%)
Query: 72 SLLKATPHLQPRPPPAALSQPVLPLAPSS-------------SAPEGPAETDPEVTPQLS 118
SL P ++ PPP P P P S P GPA + P PQL
Sbjct: 222 SLPAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLP 281
Query: 119 SPAP 122
PAP
Sbjct: 282 PPAP 285
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 33.9 bits (76), Expect = 0.31
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 52 DRATSPRDEDDTKADSWKELSLLKAT-----PHLQPRPPPAALSQPVLPLAPSSSAPEGP 106
DRA PR T + + L+ T P + RPP + PV P P +A G
Sbjct: 10 DRAFRPRGATPTCTPAQPSWARLRPTRPPEPPSTRQRPPGPRENSPVAPGPPGGAAAPGG 69
Query: 107 AETDPEVTPQLSSP 120
A T P+ T + P
Sbjct: 70 AGTTPQGTATAAKP 83
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 33.9 bits (76), Expect = 0.31
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 82 PRPPPAALSQPVLP----LAPSSSAPEGPAETDPEVTPQLSSPAPLCLTLQERLLA 133
P PPP A+ P P AP ++ PE PA PE P+L PL L ++ A
Sbjct: 1502 PPPPPPAMPSPPPPPPPAAAPLAAPPEEPAAPSPE-DPELPDTRPLHLAKKQETAA 1556
Score = 32.0 bits (71), Expect = 1.2
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 77 TPHLQPRPPPA----ALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSPAP 122
TP QP PPP AL P +AP+ S+P P P P + SP P
Sbjct: 1466 TPQPQPPPPPPPPQPALPSPPPLVAPTPSSPP-PPPLPPPPPPAMPSPPP 1514
Score = 31.6 bits (70), Expect = 1.6
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 70 ELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSPAP 122
E LL+ P P PPPA QP P P P P+ P V P SSP P
Sbjct: 1449 EPPLLEEKP--PPTPPPAPTPQPQPPPPPPPPQPALPS-PPPLVAPTPSSPPP 1498
Score = 30.0 bits (66), Expect = 4.5
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 84 PPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSPAP 122
PPP A + P P P + E P PE TP+ + P P
Sbjct: 1692 PPPKAPAPPPKPETPEKTTSEKP----PEQTPETAMPEP 1726
>gi|29826321 adducin 1 (alpha) isoform b [Homo sapiens]
Length = 768
Score = 33.5 bits (75), Expect = 0.41
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 52 DRATSPRDEDDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDP 111
D P DD+ A ++K P L P P AL P+L + P P E
Sbjct: 652 DLVPEPTTGDDSDAATFKP-----TLPDLSPDEPSEALGFPMLEKEEEAHRPPSPTEAPT 706
Query: 112 EVTPQ-LSSPAPL 123
E +P+ PAP+
Sbjct: 707 EASPEPAPDPAPV 719
>gi|29826319 adducin 1 (alpha) isoform a [Homo sapiens]
Length = 737
Score = 33.5 bits (75), Expect = 0.41
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 52 DRATSPRDEDDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDP 111
D P DD+ A ++K P L P P AL P+L + P P E
Sbjct: 621 DLVPEPTTGDDSDAATFKP-----TLPDLSPDEPSEALGFPMLEKEEEAHRPPSPTEAPT 675
Query: 112 EVTPQ-LSSPAPL 123
E +P+ PAP+
Sbjct: 676 EASPEPAPDPAPV 688
>gi|169191513 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 878
Score = 33.5 bits (75), Expect = 0.41
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 76 ATPHLQPRPPPA--ALSQPVLPLAPSSSAPEGPAETDPEVTPQ 116
ATP L+PR PPA + QPV PS + P+ P P PQ
Sbjct: 432 ATPRLEPRGPPAPEVVKQPV--YLPSKAGPKAPTACLPPPRPQ 472
>gi|239743587 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 33.5 bits (75), Expect = 0.41
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 71 LSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEG-----PAETDPEVTPQLSSPAPLCL 125
L+L TP +PPP S VLP+ P + +P+G +++ +++ +LS P
Sbjct: 34 LALRYLTPAYLAQPPPPPSSSCVLPIQPPAISPKGIFSGLGSQSINDLSGELSLTPPGTP 93
Query: 126 TLQER-LLAFE----RDRVTIPAAQVALAKQL 152
LQ R L+A + R R+ +P + K++
Sbjct: 94 VLQSRALMALKHCEARKRLKLPLESASTLKEI 125
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 33.5 bits (75), Expect = 0.41
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 84 PPPAALSQPVLPLAPSSSAPEGPAE------TDPEVTPQLSSPAPL 123
PPP S P PLAPS ++P P E T+P P + SP PL
Sbjct: 4909 PPPEEPSPPPSPLAPSPASP--PTEPLVELPTEPLAEPPVPSPLPL 4952
Score = 30.4 bits (67), Expect = 3.5
Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 23/151 (15%)
Query: 71 LSLLKATPHL-QPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSPAPLCLTLQE 129
LS L P L +P PP + LPL+PS +P ++PQL P PL L
Sbjct: 891 LSPLLGEPALSEPGEPPLSPLPEELPLSPSG---------EPSLSPQLMPPDPLPPPLSP 941
Query: 130 RLLAFERDRVTIPAAQVALAKQLAGDIALELQAYFRSKFPELPFGAFVPGGPLYDGLQAG 189
+ A AA AL+ G++ A S PE P A + P+ +A
Sbjct: 942 IITA---------AAPPALSP--LGELEYPFGAKGDSD-PESPLAAPILETPISPPPEAN 989
Query: 190 AADHVRLLVPLVLEPGLWSLVPGVDTVARDP 220
D + P++L P S V + +P
Sbjct: 990 CTD-PEPVPPMILPPSPGSPVGPASPILMEP 1019
>gi|57528101 hypothetical protein LOC728130 [Homo sapiens]
Length = 557
Score = 33.5 bits (75), Expect = 0.41
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 76 ATPHLQPRPPPA--ALSQPVLPLAPSSSAPEGPAETDPEVTPQ 116
ATP L+PR PPA + QPV PS + P+ P P PQ
Sbjct: 360 ATPRLEPRGPPAPEVVKQPV--YLPSKAGPKAPTACLPPPRPQ 400
>gi|9966885 tumor endothelial marker 1 precursor [Homo sapiens]
Length = 757
Score = 33.5 bits (75), Expect = 0.41
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 76 ATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAE--TDPEVTPQLSSPAP 122
A P L P P + P+ P P S AP+ P E P++ L SPAP
Sbjct: 616 ALPTLLPSQSPTNQTSPISPTHPHSKAPQIPREDGPSPKLALWLPSPAP 664
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 33.5 bits (75), Expect = 0.41
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 57 PRDEDDTKADSWKELSLLKATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTP- 115
P+D D +S ++AT PP L PV L + P P + PE TP
Sbjct: 1481 PQDSQDLVLGGDVPISSIQATIAKLSIRPPGGLESPVASLPGPAEPPGLPPASLPESTPI 1540
Query: 116 QLSSPAPLCLTLQE 129
SSP PL L E
Sbjct: 1541 PSSSPPPLSSPLPE 1554
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 33.5 bits (75), Expect = 0.41
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 84 PPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSPA 121
P P A P PL P S PEGP P + P +S A
Sbjct: 850 PAPTAPGPPQPPLRPQSQPPEGPLPPAPHLPPSSTSSA 887
>gi|150170710 hypothetical protein LOC728118 [Homo sapiens]
Length = 878
Score = 33.5 bits (75), Expect = 0.41
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 76 ATPHLQPRPPPA--ALSQPVLPLAPSSSAPEGPAETDPEVTPQ 116
ATP L+PR PPA + QPV PS + P+ P P PQ
Sbjct: 432 ATPRLEPRGPPAPEVVKQPV--YLPSKAGPKAPTACLPPPRPQ 472
>gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 389
Score = 33.1 bits (74), Expect = 0.53
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
Query: 68 WKELSLL---------KATPHLQPRPPPAALS-QPVLPLAPSSSAPEG---PAETDPEVT 114
W+EL+L ++PH RPPP A+ +P P S + P G E P
Sbjct: 96 WRELTLPVSPADPAAPPSSPHAPTRPPPQAVQPRPSEPTPGSEALPPGSLPEGEPRPYAL 155
Query: 115 PQLSSPAP 122
P SPAP
Sbjct: 156 PPRESPAP 163
>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
interacting protein [Homo sapiens]
Length = 1211
Score = 32.7 bits (73), Expect = 0.70
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 78 PHLQPRPPPAALSQPVLPLAPSSSAPEGPAETDPEVTPQLSSPAP 122
P L P PPP P + SS GPA+ + QLS P P
Sbjct: 752 PPLSPPPPPPLPFHDAKPSSRSSDGSRGPAQALAKPLTQLSHPVP 796
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 32.7 bits (73), Expect = 0.70
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 75 KATPHLQPRPPPAALSQPVLPLAPSSSAPEGPAET-DPEVTPQLSSPAP 122
+A P QP+PPP P P AP P A T P+ +L SP P
Sbjct: 20 QAPPQAQPQPPP-----PPPPAAPQPPQPPTAAATPQPQYVTELQSPQP 63
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,483,341
Number of Sequences: 37866
Number of extensions: 939815
Number of successful extensions: 6619
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 5727
Number of HSP's gapped (non-prelim): 1026
length of query: 454
length of database: 18,247,518
effective HSP length: 106
effective length of query: 348
effective length of database: 14,233,722
effective search space: 4953335256
effective search space used: 4953335256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.