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Search of human proteins with 115527104
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|115527104 vitelliform macular dystrophy 2-like 3 isoform 1
[Homo sapiens]
(668 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|115527104 vitelliform macular dystrophy 2-like 3 isoform 1 [H... 1365 0.0
gi|115527106 vitelliform macular dystrophy 2-like 3 isoform 2 [H... 910 0.0
gi|4759310 bestrophin 1 isoform 1 [Homo sapiens] 512 e-145
gi|119703742 vitelliform macular dystrophy 2-like 1 [Homo sapiens] 508 e-144
gi|23397576 bestrophin 4 [Homo sapiens] 481 e-136
gi|212720889 bestrophin 1 isoform 2 [Homo sapiens] 446 e-125
gi|38327612 PDZ and LIM domain 2 isoform 3 [Homo sapiens] 43 8e-04
gi|28866957 PDZ and LIM domain 2 isoform 1 [Homo sapiens] 43 8e-04
gi|21361888 PDZ and LIM domain 2 isoform 2 [Homo sapiens] 43 8e-04
gi|167736355 mucin 4 isoform a [Homo sapiens] 42 0.002
gi|239754668 PREDICTED: mucin 12 [Homo sapiens] 38 0.034
gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens] 38 0.034
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 38 0.034
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 38 0.034
gi|161019170 mucin 5AC [Homo sapiens] 37 0.077
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 37 0.077
gi|156104862 ankyrin repeat domain 38 [Homo sapiens] 36 0.10
gi|239749340 PREDICTED: hypothetical protein XP_002347000 [Homo ... 36 0.13
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 36 0.13
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 36 0.13
gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens] 34 0.38
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 34 0.38
gi|119943102 CREB binding protein isoform b [Homo sapiens] 34 0.38
gi|119943104 CREB binding protein isoform a [Homo sapiens] 34 0.38
gi|166795252 hypothetical protein LOC23359 [Homo sapiens] 34 0.50
gi|116284392 mucin 2 precursor [Homo sapiens] 34 0.50
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 34 0.50
gi|87196343 PDZ domain containing 2 [Homo sapiens] 34 0.50
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 34 0.50
gi|167234419 thyroid hormone receptor associated protein 3 [Homo... 34 0.50
>gi|115527104 vitelliform macular dystrophy 2-like 3 isoform 1 [Homo
sapiens]
Length = 668
Score = 1365 bits (3534), Expect = 0.0
Identities = 668/668 (100%), Positives = 668/668 (100%)
Query: 1 MTVTYSSKVANATFFGFHRLLLKWRGSIYKLLYREFIVFAVLYTAISLVYRLLLTGVQKR 60
MTVTYSSKVANATFFGFHRLLLKWRGSIYKLLYREFIVFAVLYTAISLVYRLLLTGVQKR
Sbjct: 1 MTVTYSSKVANATFFGFHRLLLKWRGSIYKLLYREFIVFAVLYTAISLVYRLLLTGVQKR 60
Query: 61 YFEKLSIYCDRYAEQIPVTFVLGFYVTLVVNRWWNQFVNLPWPDRLMFLISSSVHGSDEH 120
YFEKLSIYCDRYAEQIPVTFVLGFYVTLVVNRWWNQFVNLPWPDRLMFLISSSVHGSDEH
Sbjct: 61 YFEKLSIYCDRYAEQIPVTFVLGFYVTLVVNRWWNQFVNLPWPDRLMFLISSSVHGSDEH 120
Query: 121 GRLLRRTLMRYVNLTSLLIFRSVSTAVYKRFPTMDHVVEAGFMTTDERKLFNHLKSPHLK 180
GRLLRRTLMRYVNLTSLLIFRSVSTAVYKRFPTMDHVVEAGFMTTDERKLFNHLKSPHLK
Sbjct: 121 GRLLRRTLMRYVNLTSLLIFRSVSTAVYKRFPTMDHVVEAGFMTTDERKLFNHLKSPHLK 180
Query: 181 YWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFGYDWVGIPLVYTQVV 240
YWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFGYDWVGIPLVYTQVV
Sbjct: 181 YWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFGYDWVGIPLVYTQVV 240
Query: 241 TLAVYTFFFACLIGRQFLDPTKGYAGHDLDLYIPIFTLLQFFFYAGWLKVAEQLINPFGE 300
TLAVYTFFFACLIGRQFLDPTKGYAGHDLDLYIPIFTLLQFFFYAGWLKVAEQLINPFGE
Sbjct: 241 TLAVYTFFFACLIGRQFLDPTKGYAGHDLDLYIPIFTLLQFFFYAGWLKVAEQLINPFGE 300
Query: 301 DDDDFETNWCIDRNLQVSLLAVDEMHMSLPKMKKDIYWDDSAARPPYTLAAADYCIPSFL 360
DDDDFETNWCIDRNLQVSLLAVDEMHMSLPKMKKDIYWDDSAARPPYTLAAADYCIPSFL
Sbjct: 301 DDDDFETNWCIDRNLQVSLLAVDEMHMSLPKMKKDIYWDDSAARPPYTLAAADYCIPSFL 360
Query: 361 GSTVQMGLSGSDFPDEEWLWDYEKHGHRHSMIRRVKRFLSAHEHPSSPRRRSYRRQTSDS 420
GSTVQMGLSGSDFPDEEWLWDYEKHGHRHSMIRRVKRFLSAHEHPSSPRRRSYRRQTSDS
Sbjct: 361 GSTVQMGLSGSDFPDEEWLWDYEKHGHRHSMIRRVKRFLSAHEHPSSPRRRSYRRQTSDS 420
Query: 421 SMFLPRDDLSPARDLLDVPSRNPPRASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTST 480
SMFLPRDDLSPARDLLDVPSRNPPRASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTST
Sbjct: 421 SMFLPRDDLSPARDLLDVPSRNPPRASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTST 480
Query: 481 LQSLTPQSSVRTSPIKMPLVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTE 540
LQSLTPQSSVRTSPIKMPLVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTE
Sbjct: 481 LQSLTPQSSVRTSPIKMPLVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTE 540
Query: 541 QQQGPMGSILSPSEKETPPGGPSPQTVSASAEENIFNCEEDPGDTFLKRWSLPGFLGSSH 600
QQQGPMGSILSPSEKETPPGGPSPQTVSASAEENIFNCEEDPGDTFLKRWSLPGFLGSSH
Sbjct: 541 QQQGPMGSILSPSEKETPPGGPSPQTVSASAEENIFNCEEDPGDTFLKRWSLPGFLGSSH 600
Query: 601 TSLGNLSPDPMSSQPALLIDTETSSEISGINIVAGSRVSSDMLYLMENLDTKETDIIELN 660
TSLGNLSPDPMSSQPALLIDTETSSEISGINIVAGSRVSSDMLYLMENLDTKETDIIELN
Sbjct: 601 TSLGNLSPDPMSSQPALLIDTETSSEISGINIVAGSRVSSDMLYLMENLDTKETDIIELN 660
Query: 661 KETEESPK 668
KETEESPK
Sbjct: 661 KETEESPK 668
>gi|115527106 vitelliform macular dystrophy 2-like 3 isoform 2 [Homo
sapiens]
Length = 455
Score = 910 bits (2352), Expect = 0.0
Identities = 455/506 (89%), Positives = 455/506 (89%), Gaps = 51/506 (10%)
Query: 163 MTTDERKLFNHLKSPHLKYWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCS 222
MTTDERKLFNHLKSPHLKYWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCS
Sbjct: 1 MTTDERKLFNHLKSPHLKYWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCS 60
Query: 223 LLFGYDWVGIPLVYTQVVTLAVYTFFFACLIGRQFLDPTKGYAGHDLDLYIPIFTLLQFF 282
LLFGYDWVGIPLVYTQ
Sbjct: 61 LLFGYDWVGIPLVYTQ-------------------------------------------- 76
Query: 283 FYAGWLKVAEQLINPFGEDDDDFETNWCIDRNLQVSLLAVDEMHMSLPKMKKDIYWDDSA 342
VAEQLINPFGEDDDDFETNWCIDRNLQVSLLAVDEMHMSLPKMKKDIYWDDSA
Sbjct: 77 -------VAEQLINPFGEDDDDFETNWCIDRNLQVSLLAVDEMHMSLPKMKKDIYWDDSA 129
Query: 343 ARPPYTLAAADYCIPSFLGSTVQMGLSGSDFPDEEWLWDYEKHGHRHSMIRRVKRFLSAH 402
ARPPYTLAAADYCIPSFLGSTVQMGLSGSDFPDEEWLWDYEKHGHRHSMIRRVKRFLSAH
Sbjct: 130 ARPPYTLAAADYCIPSFLGSTVQMGLSGSDFPDEEWLWDYEKHGHRHSMIRRVKRFLSAH 189
Query: 403 EHPSSPRRRSYRRQTSDSSMFLPRDDLSPARDLLDVPSRNPPRASPTWKKSCFPEGSPTL 462
EHPSSPRRRSYRRQTSDSSMFLPRDDLSPARDLLDVPSRNPPRASPTWKKSCFPEGSPTL
Sbjct: 190 EHPSSPRRRSYRRQTSDSSMFLPRDDLSPARDLLDVPSRNPPRASPTWKKSCFPEGSPTL 249
Query: 463 HFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMPLVPEVLITAAEAPVPTSGGYHHDS 522
HFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMPLVPEVLITAAEAPVPTSGGYHHDS
Sbjct: 250 HFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMPLVPEVLITAAEAPVPTSGGYHHDS 309
Query: 523 ATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKETPPGGPSPQTVSASAEENIFNCEEDP 582
ATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKETPPGGPSPQTVSASAEENIFNCEEDP
Sbjct: 310 ATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKETPPGGPSPQTVSASAEENIFNCEEDP 369
Query: 583 GDTFLKRWSLPGFLGSSHTSLGNLSPDPMSSQPALLIDTETSSEISGINIVAGSRVSSDM 642
GDTFLKRWSLPGFLGSSHTSLGNLSPDPMSSQPALLIDTETSSEISGINIVAGSRVSSDM
Sbjct: 370 GDTFLKRWSLPGFLGSSHTSLGNLSPDPMSSQPALLIDTETSSEISGINIVAGSRVSSDM 429
Query: 643 LYLMENLDTKETDIIELNKETEESPK 668
LYLMENLDTKETDIIELNKETEESPK
Sbjct: 430 LYLMENLDTKETDIIELNKETEESPK 455
>gi|4759310 bestrophin 1 isoform 1 [Homo sapiens]
Length = 585
Score = 512 bits (1319), Expect = e-145
Identities = 248/414 (59%), Positives = 302/414 (72%), Gaps = 5/414 (1%)
Query: 1 MTVTYSSKVANATFFGFHRLLLKWRGSIYKLLYREFIVFAVLYTAISLVYRLLLTGVQKR 60
MT+TY+S+VANA F RLLL WRGSIYKLLY EF++F + Y I +YRL LT Q+
Sbjct: 1 MTITYTSQVANARLGSFSRLLLCWRGSIYKLLYGEFLIFLLCYYIIRFIYRLALTEEQQL 60
Query: 61 YFEKLSIYCDRYAEQIPVTFVLGFYVTLVVNRWWNQFVNLPWPDRLMFLISSSVHGSDEH 120
FEKL++YCD Y + IP++FVLGFYVTLVV RWWNQ+ NLPWPDRLM L+S V G DE
Sbjct: 61 MFEKLTLYCDSYIQLIPISFVLGFYVTLVVTRWWNQYENLPWPDRLMSLVSGFVEGKDEQ 120
Query: 121 GRLLRRTLMRYVNLTSLLIFRSVSTAVYKRFPTMDHVVEAGFMTTDERKLFNHLKSPHLK 180
GRLLRRTL+RY NL ++LI RSVSTAVYKRFP+ H+V+AGFMT E K L PH
Sbjct: 121 GRLLRRTLIRYANLGNVLILRSVSTAVYKRFPSAQHLVQAGFMTPAEHKQLEKLSLPHNM 180
Query: 181 YWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFGYDWVGIPLVYTQVV 240
+WVP++WF NL+ KA GRIRD + LQSL+ EMN R+ C L+ YDW+ IPLVYTQVV
Sbjct: 181 FWVPWVWFANLSMKAWLGGRIRDPILLQSLLNEMNTLRTQCGHLYAYDWISIPLVYTQVV 240
Query: 241 TLAVYTFFFACLIGRQFLDPTKGYAGHDLDLYIPIFTLLQFFFYAGWLKVAEQLINPFGE 300
T+AVY+FF CL+GRQFL+P K Y GH+LDL +P+FT LQFFFY GWLKVAEQLINPFGE
Sbjct: 241 TVAVYSFFLTCLVGRQFLNPAKAYPGHELDLVVPVFTFLQFFFYVGWLKVAEQLINPFGE 300
Query: 301 DDDDFETNWCIDRNLQVSLLAVDEMHMSLPKMKKDIYWDDSAARPPYTLAAADYCIPSFL 360
DDDDFETNW +DRNLQVSLLAVDEMH LP+M+ D+YW+ +PPYT A+A + SF+
Sbjct: 301 DDDDFETNWIVDRNLQVSLLAVDEMHQDLPRMEPDMYWNKPEPQPPYTAASAQFRRASFM 360
Query: 361 GSTVQMGLSGSDFPDEEWLWDYEKHGHRHSMIRRVKRFLSAHEHPSSPRRRSYR 414
GST + L+ + E+ + E H+ I + RFL H P R + R
Sbjct: 361 GSTFNISLNKEEM---EFQPNQEDEEDAHAGI--IGRFLGLQSHDHHPPRANSR 409
>gi|119703742 vitelliform macular dystrophy 2-like 1 [Homo sapiens]
Length = 509
Score = 508 bits (1307), Expect = e-144
Identities = 244/373 (65%), Positives = 296/373 (79%), Gaps = 1/373 (0%)
Query: 1 MTVTYSSKVANATFFGFHRLLLKWRGSIYKLLYREFIVFAVLYTAISLVYRLLLTGVQKR 60
MTVTY+++VANA F GF +LLL WRGSIYKLL+RE + F Y A+S YR +LT QKR
Sbjct: 1 MTVTYTARVANARFGGFSQLLLLWRGSIYKLLWRELLCFLGFYMALSAAYRFVLTEGQKR 60
Query: 61 YFEKLSIYCDRYAEQIPVTFVLGFYVTLVVNRWWNQFVNLPWPDRLMFLISSSVHGSDEH 120
YFEKL IYCD+YA IPV+FVLGFYVTLVVNRWW+Q++ +P PD LM +++ +VHG D+
Sbjct: 61 YFEKLVIYCDQYASLIPVSFVLGFYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHGRDDR 120
Query: 121 GRLLRRTLMRYVNLTSLLIFRSVSTAVYKRFPTMDHVVEAGFMTTDERKLFNHLKSPHLK 180
GRL RRTLMRY L+++LI RSVSTAV+KRFPT+DHVVEAGFMT +ERK F +L S + K
Sbjct: 121 GRLYRRTLMRYAGLSAVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNK 180
Query: 181 YWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFGYDWVGIPLVYTQVV 240
YWVP +WF NLA +AR EGRIRD+ L+ L+ E+N +R C +LF YDW+ +PLVYTQVV
Sbjct: 181 YWVPCVWFSNLAAQARREGRIRDNSALKLLLEELNVFRGKCGMLFHYDWISVPLVYTQVV 240
Query: 241 TLAVYTFFFACLIGRQFLDPTKGYAGHDLDLYIPIFTLLQFFFYAGWLKVAEQLINPFGE 300
T+A+Y++F ACLIGRQFLDP +GY HDLDL +PIFTLLQFFFYAGWLKVAEQLINPFGE
Sbjct: 241 TIALYSYFLACLIGRQFLDPAQGYKDHDLDLCVPIFTLLQFFFYAGWLKVAEQLINPFGE 300
Query: 301 DDDDFETNWCIDRNLQVSLLAVDEMHMSLPKMKKDIYWDDSAARPPYTLAAA-DYCIPSF 359
DDDDFETN+ IDRN QVS+LAVDEM+ L ++KD+YWD + AR PYT A PSF
Sbjct: 301 DDDDFETNFLIDRNFQVSMLAVDEMYDDLAVLEKDLYWDAAEARAPYTAATVFQLRQPSF 360
Query: 360 LGSTVQMGLSGSD 372
GST + L+ D
Sbjct: 361 QGSTFDITLAKED 373
>gi|23397576 bestrophin 4 [Homo sapiens]
Length = 473
Score = 481 bits (1239), Expect = e-136
Identities = 237/392 (60%), Positives = 300/392 (76%), Gaps = 18/392 (4%)
Query: 1 MTVTYSSKVANATFFGFHRLLLKWRGSIYKLLYREFIVFAVLYTAISLVYRLLLTGVQKR 60
MTV+Y+ KVA A F GF LLL+WRGSIYKLLY+EF++F LY +S+ YRLLLT Q+
Sbjct: 1 MTVSYTLKVAEARFGGFSGLLLRWRGSIYKLLYKEFLLFGALYAVLSITYRLLLTQEQRY 60
Query: 61 YFEKLSIYCDRYAEQIPVTFVLGFYVTLVVNRWWNQFVNLPWPDRLMFLISSSVHGSDEH 120
+ +++ YC+R A+ IP++FVLGFYVTLVVNRWW+Q+ ++P PD+LM +IS+SVHG D+
Sbjct: 61 VYAQVARYCNRSADLIPLSFVLGFYVTLVVNRWWSQYTSIPLPDQLMCVISASVHGVDQR 120
Query: 121 GRLLRRTLMRYVNLTSLLIFRSVSTAVYKRFPTMDHVVEAGFMTTDERKLFNHLKSPHLK 180
GRLLRRTL+RY NL S+L+ RSVST V KRFPTM+HVV+AGFM+ +ERK F LKS K
Sbjct: 121 GRLLRRTLIRYANLASVLVLRSVSTRVLKRFPTMEHVVDAGFMSQEERKKFESLKSDFNK 180
Query: 181 YWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFGYDWVGIPLVYTQVV 240
YWVP +WF NLA +AR +GRIRD + L L+ E+N+YR+ CS+LF YDW+ IPLVYTQVV
Sbjct: 181 YWVPCVWFTNLAAQARRDGRIRDDIALCLLLEELNKYRAKCSMLFHYDWISIPLVYTQVV 240
Query: 241 TLAVYTFFFACLIGRQFLDPTKGYAG---------------HDLDLYIPIFTLLQFFFYA 285
T+AVY+FF L+GRQF++P G A D D+Y+P+ TLLQFFFYA
Sbjct: 241 TIAVYSFFALSLVGRQFVEPEAGAAKPQKLLKPGQEPAPALGDPDMYVPLTTLLQFFFYA 300
Query: 286 GWLKVAEQLINPFGEDDDDFETNWCIDRNLQVSLLAVDEMHMSLPKMKKDIYWDDSAARP 345
GWLKVAEQ+INPFGEDDDDFETN IDRNLQVSLL+VDEM+ +LP +KD YWD+ +P
Sbjct: 301 GWLKVAEQIINPFGEDDDDFETNQLIDRNLQVSLLSVDEMYQNLPPAEKDQYWDEDQPQP 360
Query: 346 PYTLA-AADYCIPSFLGSTVQMGLSGSDFPDE 376
PYT+A AA+ PSFLGST + + SD P++
Sbjct: 361 PYTVATAAESLRPSFLGSTFNLRM--SDDPEQ 390
>gi|212720889 bestrophin 1 isoform 2 [Homo sapiens]
Length = 604
Score = 446 bits (1146), Expect = e-125
Identities = 213/353 (60%), Positives = 259/353 (73%), Gaps = 5/353 (1%)
Query: 62 FEKLSIYCDRYAEQIPVTFVLGFYVTLVVNRWWNQFVNLPWPDRLMFLISSSVHGSDEHG 121
FEKL++YCD Y + IP++FVLGFYVTLVV RWWNQ+ NLPWPDRLM L+S V G DE G
Sbjct: 2 FEKLTLYCDSYIQLIPISFVLGFYVTLVVTRWWNQYENLPWPDRLMSLVSGFVEGKDEQG 61
Query: 122 RLLRRTLMRYVNLTSLLIFRSVSTAVYKRFPTMDHVVEAGFMTTDERKLFNHLKSPHLKY 181
RLLRRTL+RY NL ++LI RSVSTAVYKRFP+ H+V+AGFMT E K L PH +
Sbjct: 62 RLLRRTLIRYANLGNVLILRSVSTAVYKRFPSAQHLVQAGFMTPAEHKQLEKLSLPHNMF 121
Query: 182 WVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFGYDWVGIPLVYTQVVT 241
WVP++WF NL+ KA GRIRD + LQSL+ EMN R+ C L+ YDW+ IPLVYTQVVT
Sbjct: 122 WVPWVWFANLSMKAWLGGRIRDPILLQSLLNEMNTLRTQCGHLYAYDWISIPLVYTQVVT 181
Query: 242 LAVYTFFFACLIGRQFLDPTKGYAGHDLDLYIPIFTLLQFFFYAGWLKVAEQLINPFGED 301
+AVY+FF CL+GRQFL+P K Y GH+LDL +P+FT LQFFFY GWLKVAEQLINPFGED
Sbjct: 182 VAVYSFFLTCLVGRQFLNPAKAYPGHELDLVVPVFTFLQFFFYVGWLKVAEQLINPFGED 241
Query: 302 DDDFETNWCIDRNLQVSLLAVDEMHMSLPKMKKDIYWDDSAARPPYTLAAADYCIPSFLG 361
DDDFETNW +DRNLQVSLLAVDEMH LP+M+ D+YW+ +PPYT A+A + SF+G
Sbjct: 242 DDDFETNWIVDRNLQVSLLAVDEMHQDLPRMEPDMYWNKPEPQPPYTAASAQFRRASFMG 301
Query: 362 STVQMGLSGSDFPDEEWLWDYEKHGHRHSMIRRVKRFLSAHEHPSSPRRRSYR 414
ST + L+ + E+ + E H+ I + RFL H P R + R
Sbjct: 302 STFNISLNKEEM---EFQPNQEDEEDAHAGI--IGRFLGLQSHDHHPPRANSR 349
>gi|38327612 PDZ and LIM domain 2 isoform 3 [Homo sapiens]
Length = 278
Score = 43.1 bits (100), Expect = 8e-04
Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 25/156 (16%)
Query: 487 QSSVRTSPIKMPLVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPM 546
QS +R SP PL ++ + A +P T+G DS+ +L++ F G + TE Q
Sbjct: 66 QSKIRQSP--SPLRLQLDRSQATSPGQTNG----DSSLEVLATRFQGSVRTYTESQSSLR 119
Query: 547 GSILSP---SEKETPPGGPSPQTVSASAEENIFNCEE----DPGDTFLKRWSLPGFLGSS 599
S SP S + P P P + S + E I + PG R S G GS
Sbjct: 120 SSYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSR 179
Query: 600 HTSLGNL----------SPDPMSSQPALLIDTETSS 625
LG SP P SS+P++ D+E S
Sbjct: 180 QAGLGRAGDSAVLVLPPSPGPRSSRPSM--DSEGGS 213
>gi|28866957 PDZ and LIM domain 2 isoform 1 [Homo sapiens]
Length = 366
Score = 43.1 bits (100), Expect = 8e-04
Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 25/156 (16%)
Query: 487 QSSVRTSPIKMPLVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPM 546
QS +R SP PL ++ + A +P T+G DS+ +L++ F G + TE Q
Sbjct: 66 QSKIRQSP--SPLRLQLDRSQATSPGQTNG----DSSLEVLATRFQGSVRTYTESQSSLR 119
Query: 547 GSILSP---SEKETPPGGPSPQTVSASAEENIFNCEE----DPGDTFLKRWSLPGFLGSS 599
S SP S + P P P + S + E I + PG R S G GS
Sbjct: 120 SSYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSR 179
Query: 600 HTSLGNL----------SPDPMSSQPALLIDTETSS 625
LG SP P SS+P++ D+E S
Sbjct: 180 QAGLGRAGDSAVLVLPPSPGPRSSRPSM--DSEGGS 213
>gi|21361888 PDZ and LIM domain 2 isoform 2 [Homo sapiens]
Length = 352
Score = 43.1 bits (100), Expect = 8e-04
Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 25/156 (16%)
Query: 487 QSSVRTSPIKMPLVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPM 546
QS +R SP PL ++ + A +P T+G DS+ +L++ F G + TE Q
Sbjct: 66 QSKIRQSP--SPLRLQLDRSQATSPGQTNG----DSSLEVLATRFQGSVRTYTESQSSLR 119
Query: 547 GSILSP---SEKETPPGGPSPQTVSASAEENIFNCEE----DPGDTFLKRWSLPGFLGSS 599
S SP S + P P P + S + E I + PG R S G GS
Sbjct: 120 SSYSSPTSLSPRAGSPFSPPPSSSSLTGEAAISRSFQSLACSPGLPAADRLSYSGRPGSR 179
Query: 600 HTSLGNL----------SPDPMSSQPALLIDTETSS 625
LG SP P SS+P++ D+E S
Sbjct: 180 QAGLGRAGDSAVLVLPPSPGPRSSRPSM--DSEGGS 213
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 41.6 bits (96), Expect = 0.002
Identities = 56/238 (23%), Positives = 85/238 (35%), Gaps = 48/238 (20%)
Query: 405 PSSPRRRSYRRQTSDSSMFLPRDDLSPARDLLDVPSRNPPRASPTWKKSCFPEGSPTLHF 464
PS + + TS SS P D ++ + PS N T S P+ SP +
Sbjct: 582 PSYSVTQMIKTATSPSSS--PMLDRHTSQQITTAPSTNHSTIHST---STSPQESPAVS- 635
Query: 465 SMGELSTIRETSQTSTLQSLTPQSSVRT---------------SPIKMPLVPEVLITAAE 509
G + T ++ T +S++P + +T S I P +
Sbjct: 636 QRGHTQAPQTTQESQTTRSVSPMTDTKTVTTPGSSFTASGHSPSEIVPQDAPTISAATTF 695
Query: 510 APVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGP--------MGSILSPSEKETPPGG 561
AP PT G+ + T+ L + PS + GP G++ + + PGG
Sbjct: 696 APAPTGDGHTTQAPTTALQA-----APSSHDATLGPSGGTSLSKTGALTLANSVVSTPGG 750
Query: 562 P-----------SPQTVSASAEENIFNCEEDPGDTFLKRWSLPGFLGSSHTSLGNLSP 608
P SP T +A + E G T + S P GS TS G +P
Sbjct: 751 PEGQWTSASASTSPDTAAAMTHTHQAESTEASGQT---QTSEPASSGSRTTSAGTATP 805
>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
Length = 1952
Score = 37.7 bits (86), Expect = 0.034
Identities = 47/206 (22%), Positives = 71/206 (34%), Gaps = 32/206 (15%)
Query: 439 PSRNPPRASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMP 498
PS +P+ S F + S T H S T ++ ++TL + V +SP+
Sbjct: 346 PSSKDTSPAPSGTTSAFVKLSTTYHSSPSSTPTTHFSASSTTLGHSEESTPVHSSPVATA 405
Query: 499 LVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKE-- 556
P +A V S YH P T+ P S S +E
Sbjct: 406 TTPPPARSATSGHVEESTAYHR--------------SPGSTQTMHFPESSTTSGHSEESA 451
Query: 557 ------TPPGGPSPQTVSASAEENIFNCEEDPGDT-FLKRWSLPGFLGSSHTSLGNLSPD 609
T +P T +A A + + T F ++ G S + + SPD
Sbjct: 452 TFHGSTTHTKSSTPSTTAALAHTSYHSSLGSTETTHFRDSSTISG--RSEESKASHSSPD 509
Query: 610 -------PMSSQPALLIDTETSSEIS 628
P S P++L+ T S IS
Sbjct: 510 AMATTVLPAGSTPSVLVGDSTPSPIS 535
Score = 35.4 bits (80), Expect = 0.17
Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 28/184 (15%)
Query: 439 PSRNPPRASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMP 498
PS N R +P S F E S T H S + T +++++T + ++ +SP
Sbjct: 702 PSSNDTRPAPPTTTSAFVEPSTTSHGSPSSIPTTHISARSTTSGLVEESTTYHSSPGSTQ 761
Query: 499 LV--PEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKE 556
+ PE T+ T+ H S T +SS PS T + P+
Sbjct: 762 TMHFPESDTTSGRGEESTTS---HSSTTHTISS-----APSTTS------ALVEEPTSYH 807
Query: 557 TPPGG------PSPQTVSASAEENI-FNCEEDPGDTFLKRWSLPGFLGSSHTSLGNLSPD 609
+ PG P T S +EE+I + +D T + LP ++ LG +
Sbjct: 808 SSPGSTATTHFPDSSTTSGRSEESIASHSSQDATGTIV----LPA-RSTNSVLLGESTTS 862
Query: 610 PMSS 613
P+SS
Sbjct: 863 PISS 866
Score = 35.0 bits (79), Expect = 0.22
Identities = 41/171 (23%), Positives = 55/171 (32%), Gaps = 31/171 (18%)
Query: 420 SSMFLPRDDLSPARDLL---------DVPSRNPPRASPTWKKSCFPEGSPTLHFSMGELS 470
SS PR LSPA PS +P S F E S T H S +
Sbjct: 1115 SSTGSPRTTLSPAGSTTRQGESTTFQSWPSSKDTMPAPPTTTSAFVELSTTSHGSPSSIP 1174
Query: 471 TIRETSQTSTLQSLTPQSSVRTSPIKMPLVPEVLITAAEAPVPTSGGYHHDSATSILSSE 530
T ++ ++T ++V +SP+ P + V S YH
Sbjct: 1175 TTHFSASSTTFGRSEESTTVHSSPVAPATTPSPARSTTSGLVEESTAYHS---------- 1224
Query: 531 FTGVQPSKTEQQQGPMGSILSPSEKETPPGGPS--------PQTVSASAEE 573
P T+ P S S +E+ S P T SA EE
Sbjct: 1225 ----SPGSTQTMHFPESSTASGRSEESRTSHSSTTHTISSPPSTTSALVEE 1271
>gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens]
Length = 861
Score = 37.7 bits (86), Expect = 0.034
Identities = 47/206 (22%), Positives = 71/206 (34%), Gaps = 32/206 (15%)
Query: 439 PSRNPPRASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMP 498
PS +P+ S F + S T H S T ++ ++TL + V +SP+
Sbjct: 281 PSSKDTSPAPSGTTSAFVKLSTTYHSSPSSTPTTHFSASSTTLGHSEESTPVHSSPVATA 340
Query: 499 LVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKE-- 556
P +A V S YH P T+ P S S +E
Sbjct: 341 TTPPPARSATSGHVEESTAYHR--------------SPGSTQTMHFPESSTTSGHSEESA 386
Query: 557 ------TPPGGPSPQTVSASAEENIFNCEEDPGDT-FLKRWSLPGFLGSSHTSLGNLSPD 609
T +P T +A A + + T F ++ G S + + SPD
Sbjct: 387 TFHGSTTHTKSSTPSTTAALAHTSYHSSLGSTETTHFRDSSTISG--RSEESKASHSSPD 444
Query: 610 -------PMSSQPALLIDTETSSEIS 628
P S P++L+ T S IS
Sbjct: 445 AMATTVLPAGSTPSVLVGDSTPSPIS 470
Score = 32.7 bits (73), Expect = 1.1
Identities = 44/178 (24%), Positives = 67/178 (37%), Gaps = 16/178 (8%)
Query: 439 PSRNPPRASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMP 498
PS R +P S F E S T H S + T +++++T + ++ +SP
Sbjct: 637 PSSKDTRPAPPTTTSAFVEPSTTSHGSPSSIPTTHISARSTTSGLVEESTTYHSSPGSTQ 696
Query: 499 LV--PEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQ-QQGPMGSILSPSEK 555
+ PE T+ T+ H S T +SS PS T + P SP
Sbjct: 697 TMHFPESDTTSGRGEESTTS---HSSTTHTISS-----APSTTSALVEEPTSYHSSPGST 748
Query: 556 ETPPGGPSPQTVSASAEENIFNCEEDPGDTFLKRWSLPGFLGSSHTSLGNLSPDPMSS 613
T S T S E + +D T + LP ++ LG + P+SS
Sbjct: 749 ATTHFPDSSTTSGRSEESTASHSSQDATGTIV----LPA-RSTNSVLLGESTTSPISS 801
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 37.7 bits (86), Expect = 0.034
Identities = 47/206 (22%), Positives = 71/206 (34%), Gaps = 32/206 (15%)
Query: 439 PSRNPPRASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMP 498
PS +P+ S F + S T H S T ++ ++TL + V +SP+
Sbjct: 425 PSSKDTSPAPSGTTSAFVKLSTTYHSSPSSTPTTHFSASSTTLGHSEESTPVHSSPVATA 484
Query: 499 LVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKE-- 556
P +A V S YH P T+ P S S +E
Sbjct: 485 TTPPPARSATSGHVEESTAYHR--------------SPGSTQTMHFPESSTTSGHSEESA 530
Query: 557 ------TPPGGPSPQTVSASAEENIFNCEEDPGDT-FLKRWSLPGFLGSSHTSLGNLSPD 609
T +P T +A A + + T F ++ G S + + SPD
Sbjct: 531 TFHGSTTHTKSSTPSTTAALAHTSYHSSLGSTETTHFRDSSTISG--RSEESKASHSSPD 588
Query: 610 -------PMSSQPALLIDTETSSEIS 628
P S P++L+ T S IS
Sbjct: 589 AMATTVLPAGSTPSVLVGDSTPSPIS 614
Score = 35.8 bits (81), Expect = 0.13
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 453 SCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTS-------------PIKMPL 499
+ FP+ + T S + T +SQ ST +L+P S+ +S + L
Sbjct: 4121 TAFPDSTTTSGLS--QEPTTSHSSQGSTEATLSPGSTTASSLGQQSTTFHSSPGDTETTL 4178
Query: 500 VPEVLITA----AEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSEK 555
+P+ IT+ A P +S G H + T SS TG+Q T Q P S +PS
Sbjct: 4179 LPDDTITSGLVEASTPTHSSTGSLHTTLTPA-SSTSTGLQEESTTFQSWPSSSDTTPSPP 4237
Query: 556 ETPPGGPSPQTVSASAEENIFNCEEDPGDTFLKRWSLPGFLGSSHTSLGNLSPDPMSSQP 615
T T S + T L R + SS + G + P S
Sbjct: 4238 STTAVPVEVSTTYHSRPSSTPTTHFSASSTTLGRSEESTTVHSSPGATGT-ALFPTRSAT 4296
Query: 616 ALLIDTETSSEIS 628
++L+ T+S IS
Sbjct: 4297 SVLVGEPTTSPIS 4309
Score = 35.0 bits (79), Expect = 0.22
Identities = 37/155 (23%), Positives = 51/155 (32%), Gaps = 23/155 (14%)
Query: 439 PSRNPPRASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMP 498
PS +P S F E S T H S T ++ ++TL ++V +SP+
Sbjct: 1836 PSSKDTMPAPPTTTSAFVELSTTSHGSPSSTPTTHFSASSTTLGRSEESTTVHSSPVATA 1895
Query: 499 LVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKETP 558
P + V S YH P T+ P S S +E+
Sbjct: 1896 TTPSPARSTTSGLVEESTAYHS--------------SPGSTQTMHFPESSTASGRSEESR 1941
Query: 559 PGGPS--------PQTVSASAEENIFNCEEDPGDT 585
S P T SA EE + PG T
Sbjct: 1942 TSHSSTTHTISSPPSTTSALVEEPT-SYHSSPGST 1975
Score = 34.7 bits (78), Expect = 0.29
Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 7/147 (4%)
Query: 439 PSRNPPRASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMP 498
P+ +P S F E S T H S T ++ ++TL ++V +SP+
Sbjct: 4476 PNSKDTTPAPPTTTSAFVELSTTSHGSPSSTPTTHFSASSTTLGRSEESTTVHSSPVATA 4535
Query: 499 LVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKETP 558
P + V S YH +S S++ S T +G + S T
Sbjct: 4536 TTPSPARSTTSGLVEESTTYH----SSPGSTQTMHFPESNTTSGRGEESTTSHSSTTHTI 4591
Query: 559 PGGPSPQTVSASAEENIFNCEEDPGDT 585
PS T SA EE + PG T
Sbjct: 4592 SSAPS--TTSALVEEPT-SYHSSPGST 4615
Score = 34.3 bits (77), Expect = 0.38
Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 7/147 (4%)
Query: 439 PSRNPPRASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMP 498
P+ +P S F E S T H S T ++ ++TL ++V +SP+
Sbjct: 3393 PNSKDTTPAPPTTTSAFVELSTTSHGSPSSTPTTHFSASSTTLGRSEESTTVHSSPVATA 3452
Query: 499 LVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKETP 558
P + V S YH +S S++ S T +G + S T
Sbjct: 3453 TTPSPARSTTSGLVEESTTYH----SSPGSTQTMHFPESDTTSGRGEESTTSHSSTTHTI 3508
Query: 559 PGGPSPQTVSASAEENIFNCEEDPGDT 585
PS T SA EE + PG T
Sbjct: 3509 SSAPS--TTSALVEEPT-SYHSSPGST 3532
Score = 32.7 bits (73), Expect = 1.1
Identities = 43/169 (25%), Positives = 63/169 (37%), Gaps = 13/169 (7%)
Query: 439 PSRNPPRASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMP 498
PS R +P S F E S T H S + T +++++T + ++ +SP
Sbjct: 781 PSSKDTRPAPPTTTSAFVEPSTTSHGSPSSIPTTHISARSTTSGLVEESTTYHSSPGSTQ 840
Query: 499 LV--PEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQ-QQGPMGSILSPSEK 555
+ PE T+ T+ H S T +SS PS T + P SP
Sbjct: 841 TMHFPESDTTSGRGEESTTS---HSSTTHTISS-----APSTTSALVEEPTSYHSSPGST 892
Query: 556 ETPPGGPSPQTVSASAEENIFNCEEDPGDTFL--KRWSLPGFLGSSHTS 602
T S T S E + +D T + R + LG S TS
Sbjct: 893 ATTHFPDSSTTSGRSEESTASHSSQDATGTIVLPARSTTSVLLGESTTS 941
Score = 31.6 bits (70), Expect = 2.5
Identities = 43/188 (22%), Positives = 61/188 (32%), Gaps = 34/188 (18%)
Query: 406 SSPRRRSYRRQTSDSSMFLPRDDLSPARDLLDV---PSRNPPRASPTWKKSCFP------ 456
S+ RS S SS + PAR V S P +S + + + P
Sbjct: 4624 STTSGRSEESTASHSSQDATGTIVLPARSTTSVLLGESTTSPISSGSMETTALPGSTTTP 4683
Query: 457 ---EGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMPLVPEVLITAAEAPVP 513
E S T H S T ++ ++TL ++V +SP+ P + V
Sbjct: 4684 GLSEKSTTFHSSPSSTPTTHFSASSTTLGRSEESTTVHSSPVATATTPSPARSTTSGLVE 4743
Query: 514 TSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKETPPGGPS--------PQ 565
S YH P T+ P S S +E+ S P
Sbjct: 4744 ESTAYHS--------------SPGSTQTMHFPESSTASGRSEESRTSHSSTTHTISSPPS 4789
Query: 566 TVSASAEE 573
T SA EE
Sbjct: 4790 TTSALVEE 4797
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 37.7 bits (86), Expect = 0.034
Identities = 53/209 (25%), Positives = 76/209 (36%), Gaps = 57/209 (27%)
Query: 419 DSSMFLPRDDLSP----ARDLLDVPSRNPPRASPTWKKSC-----------FPEGSP--T 461
D + P LSP + +L VPS + PT K C +PE SP T
Sbjct: 1135 DEVLRYPDRSLSPEDAESLSVLSVPSPDTANQEPTPKSPCGLTEQYLHKDRWPEVSPEDT 1194
Query: 462 LHFSMGELSTIRETSQTSTLQSLTPQS-------------------------SVRTSPIK 496
S+ E S +ETS + + L+P+S S T+P+
Sbjct: 1195 QSLSLSEESPSKETSLDVSSKQLSPESLGTLQFGELNLGKEEMGHLMQAEDTSHHTAPMS 1254
Query: 497 MPLVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPM-------GSI 549
+P P AA A PT G + + T I P+ + P G+I
Sbjct: 1255 VP-EPH----AATASPPTDGTTRYSAQTDITDDSLDRKSPASSFSHSTPSGNGKYLPGAI 1309
Query: 550 LSPSEKETPPG---GPSPQTVSASAEENI 575
SP E P SP+++ A E+I
Sbjct: 1310 TSPDEHILTPDSSFSKSPESLPGPALEDI 1338
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 36.6 bits (83), Expect = 0.077
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 446 ASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMPLVPEVLI 505
++P + P +P + + + +T T+ ST + TP S++RT+P P+VL
Sbjct: 2580 STPATSSTATPSSTPGTTWILTKPTTTATTT-ASTGSTATPTSTLRTAP-----PPKVLT 2633
Query: 506 TAAEAPVPTSGGYHHDS----ATSILSSEFTGVQPSKTEQQQGPMGSILSP----SEKET 557
T A P TS S AT++ + T P+ T P S+ + S+ T
Sbjct: 2634 TTATTPTVTSSKATPSSSPGTATALPALRSTATTPTATSVTPIPSSSLGTTWTRLSQTTT 2693
Query: 558 PPGGPSPQTVSASAE 572
P S T S++ E
Sbjct: 2694 PTATMSTATPSSTPE 2708
Score = 31.6 bits (70), Expect = 2.5
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 11/112 (9%)
Query: 446 ASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMPLVPEVLI 505
++P + P +P + + EL+T T+ ST + TP S+ T+P P+VL
Sbjct: 4703 STPATSSTAMPSSTPGTTWILTELTTTATTT-ASTGSTATPSSTPGTAP-----PPKVLT 4756
Query: 506 TAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKET 557
+ A P TS ATS S P T + ++P T
Sbjct: 4757 SPATTPTATS-----SKATSSSSPRTATTLPVLTSTATKSTATSVTPIPSST 4803
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 36.6 bits (83), Expect = 0.077
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 446 ASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMPLVPEVLI 505
++P + P +P + + + +T T+ ST + TP S++RT+P P+VL
Sbjct: 1890 STPATSSTATPSSTPGTTWILTKPTTTATTT-ASTGSTATPTSTLRTAP-----PPKVLT 1943
Query: 506 TAAEAPVPTSGGYHHDS----ATSILSSEFTGVQPSKTEQQQGPMGSILSP----SEKET 557
T A P TS S AT++ + T P+ T P S+ + S+ T
Sbjct: 1944 TTATTPTVTSSKATPSSSPGTATALPALRSTATTPTATSVTPIPSSSLGTTWTRLSQTTT 2003
Query: 558 PPGGPSPQTVSASAE 572
P S T S++ E
Sbjct: 2004 PTATMSTATPSSTPE 2018
Score = 31.6 bits (70), Expect = 2.5
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 11/112 (9%)
Query: 446 ASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMPLVPEVLI 505
++P + P +P + + EL+T T+ ST + TP S+ T+P P+VL
Sbjct: 4233 STPATSSTAMPSSTPGTTWILTELTTTATTT-ASTGSTATPSSTPGTAP-----PPKVLT 4286
Query: 506 TAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKET 557
+ A P TS ATS S P T + ++P T
Sbjct: 4287 SPATTPTATS-----SKATSSSSPRTATTLPVLTSTATKSTATSVTPIPSST 4333
Score = 30.4 bits (67), Expect = 5.5
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 471 TIRETSQTSTLQSLTPQSSVRTSPIKMPLVPEVLITAAEAPVPTSGGYHHDSATSILSSE 530
T T+ T+T + P S+ T+PI P VL T A P TS + +S L +
Sbjct: 2694 TTTATTITATGSTTNPSSTPGTTPI-----PPVLTTTATTPAATSSTV---TPSSALGTT 2745
Query: 531 FTGVQPSKTEQQQGPMGSILSPSEKET 557
T P+ T G LSPS T
Sbjct: 2746 HTPPVPNTTATTH---GRSLSPSSPHT 2769
>gi|156104862 ankyrin repeat domain 38 [Homo sapiens]
Length = 995
Score = 36.2 bits (82), Expect = 0.10
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 493 SPIKMPLVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGS---- 548
SP + L+P++ + V TS S S LS+E ++ + TEQ+ GP G
Sbjct: 467 SPAERVLLPQLSLPQGPEQVLTS------SVHSFLSTELR-IEEAGTEQEGGPQGGTRGA 519
Query: 549 --ILSPSEKETPPGGPSPQTVSASAEENIFNCEEDPGDTFLKRW--SLPGFLGSSHTSLG 604
L S+++TPP G + + +E+ P D + ++ + L L
Sbjct: 520 GGFLWGSDRKTPPAGREETSSNLPGKEHPGRPPSSPTDATIGQYVKKIQELLQEQWNCLE 579
Query: 605 NLSPDPMSS--QPALLIDTETSSEISGINIV 633
+ P+ S+ QPA + + S +S +N++
Sbjct: 580 HGYPELASAIKQPASKLSSIQSQLLSSLNLL 610
>gi|239749340 PREDICTED: hypothetical protein XP_002347000 [Homo
sapiens]
Length = 349
Score = 35.8 bits (81), Expect = 0.13
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 438 VPSRNPPRASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQ--SLTPQSSVRTSPI 495
+P R+P +P ++ S FP P+ S R +S+T+ Q SL Q RT+P
Sbjct: 96 LPGRHPSGTAP-FQDSSFPGQHPSRIASFQG----RHSSRTAPFQDGSLPGQHPSRTAPF 150
Query: 496 KMPLVPEVLITAAEAPVP--TSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPS 553
+ +P L + AP T G H S F G PS+ QG S +P
Sbjct: 151 QDDTLPGWL-PSRTAPFQDNTLPGRHPSGTAPFQDSSFPGQHPSRIASFQGRHSSRTAPF 209
Query: 554 EKETPPG 560
+ + PG
Sbjct: 210 QDGSLPG 216
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 35.8 bits (81), Expect = 0.13
Identities = 53/239 (22%), Positives = 93/239 (38%), Gaps = 35/239 (14%)
Query: 361 GSTVQMGLSGSDFPDEEWLWDYEKHGHRHSMIRRVKRFLSAHEHPSSPRRRSYRRQTSD- 419
GS +S P +E K +H ++ K+ ++ P + ++ D
Sbjct: 86 GSRKSRCVSVQTDPTDEIPTKKSKKHKKHKNKKKKKKKEKEKKYKRQPEESESKTKSHDD 145
Query: 420 ------SSMFLPRDDLSPARDLLDVPSRNPPRASPTWKKSCFPEGSPTLHFSMGE---LS 470
S FL + D P+ L++P+R S T + P + + E L
Sbjct: 146 GNIDLESDSFL-KFDSEPSAVALELPTR-AFGPSETNESPAVVLEPPVVSMEVSEPHILE 203
Query: 471 TIRETSQTSTLQS-----LTPQSSVRTSPIKMPLVPEVLITAAEAPVPTSG--------- 516
T++ ++T+ L ++ QS + + P + ++L + A APVPT+
Sbjct: 204 TLKPATKTAELSVVSTSVISEQSEQSVAVMPEPSMTKILDSFAAAPVPTTTLVLKSSEPV 263
Query: 517 ---GYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSE-----KETPPG-GPSPQT 566
+ + + S E T +PSK + P+ +L PSE ETP P P T
Sbjct: 264 VTMSVEYQMKSVLKSVESTSPEPSKIMLVEPPVAKVLEPSETLVVSSETPTEVYPEPST 322
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 35.8 bits (81), Expect = 0.13
Identities = 53/239 (22%), Positives = 93/239 (38%), Gaps = 35/239 (14%)
Query: 361 GSTVQMGLSGSDFPDEEWLWDYEKHGHRHSMIRRVKRFLSAHEHPSSPRRRSYRRQTSD- 419
GS +S P +E K +H ++ K+ ++ P + ++ D
Sbjct: 86 GSRKSRCVSVQTDPTDEIPTKKSKKHKKHKNKKKKKKKEKEKKYKRQPEESESKTKSHDD 145
Query: 420 ------SSMFLPRDDLSPARDLLDVPSRNPPRASPTWKKSCFPEGSPTLHFSMGE---LS 470
S FL + D P+ L++P+R S T + P + + E L
Sbjct: 146 GNIDLESDSFL-KFDSEPSAVALELPTR-AFGPSETNESPAVVLEPPVVSMEVSEPHILE 203
Query: 471 TIRETSQTSTLQS-----LTPQSSVRTSPIKMPLVPEVLITAAEAPVPTSG--------- 516
T++ ++T+ L ++ QS + + P + ++L + A APVPT+
Sbjct: 204 TLKPATKTAELSVVSTSVISEQSEQSVAVMPEPSMTKILDSFAAAPVPTTTLVLKSSEPV 263
Query: 517 ---GYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSE-----KETPPG-GPSPQT 566
+ + + S E T +PSK + P+ +L PSE ETP P P T
Sbjct: 264 VTMSVEYQMKSVLKSVESTSPEPSKIMLVEPPVAKVLEPSETLVVSSETPTEVYPEPST 322
>gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens]
Length = 2089
Score = 34.3 bits (77), Expect = 0.38
Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 22/184 (11%)
Query: 406 SSPRRRSYRRQTSDSSMFLPRDDLSPARDLLDVPSRNPPRAS-PTWKKSC---------F 455
S P ++ R + + SS+ P + A +L S + P S PT++ +
Sbjct: 1221 SEPTSQATRGRKNRSSVKTPEPVVPTAPELQPSTSTDQPVTSEPTYQATRGRKNRSSVKT 1280
Query: 456 PEG----SPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMPLVPEVLI-TAAEA 510
PE +P L S + + T +S T SSV+T +P PE+ I T+ +
Sbjct: 1281 PEPVVPTAPELRPSTSTDRPVTPKPTSRTTRSRTNMSSVKTPETVVPTAPELQISTSTDQ 1340
Query: 511 PVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKETPPGGPSPQTVSAS 570
PV TS + T + K + P+ L PS P P P + +
Sbjct: 1341 PVT-------PKPTSRTTRSRTNMSSVKNPESTVPIAPELPPSTSTEQPVTPEPTSRATR 1393
Query: 571 AEEN 574
+N
Sbjct: 1394 GRKN 1397
Score = 32.3 bits (72), Expect = 1.4
Identities = 41/166 (24%), Positives = 64/166 (38%), Gaps = 16/166 (9%)
Query: 414 RRQTSDSSMFLPR----DDLSPARDLLDVPSRNPPRASPTWKKSCFPEGSPTLHFSMGEL 469
R+ D S P +L P + +R R +P S PE P+ S +
Sbjct: 1079 RKTRQDGSQEAPEAPLSSELEPFHPKPKIRTRKSSRMTPFPATSAAPEPHPST--STAQP 1136
Query: 470 STIRETSQTSTLQSLTPQSSVRTSPIKMPLVPEVL-ITAAEAPVPTSGGYHHDSATSILS 528
T + TSQ + +S T +SSV+T +P PE+ T+ + PV + TS ++
Sbjct: 1137 VTPKPTSQAT--RSRTNRSSVKTPEPVVPTAPELQPSTSTDQPVTS-------EPTSQVT 1187
Query: 529 SEFTGVQPSKTEQQQGPMGSILSPSEKETPPGGPSPQTVSASAEEN 574
KT + P L PS P P + + +N
Sbjct: 1188 RGRKSRSSVKTPETVVPTALELQPSTSTDRPVTSEPTSQATRGRKN 1233
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 34.3 bits (77), Expect = 0.38
Identities = 34/143 (23%), Positives = 47/143 (32%), Gaps = 22/143 (15%)
Query: 439 PSRNPPRASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMP 498
PS +P S F E S T H S T ++ ++TL ++V +SP+
Sbjct: 1323 PSSKDTMPAPPTTTSAFVELSTTSHGSPSSTPTTHFSASSTTLGRSEESTTVHSSPVATA 1382
Query: 499 LVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKETP 558
P + V S YH P T+ P S S +E+
Sbjct: 1383 TTPSPARSTTSGLVEESTAYHS--------------SPGSTQTMHFPESSTASGRSEESR 1428
Query: 559 PGGPS--------PQTVSASAEE 573
S P T SA EE
Sbjct: 1429 TSHSSTTHTISSPPSTTSALVEE 1451
Score = 32.7 bits (73), Expect = 1.1
Identities = 43/169 (25%), Positives = 63/169 (37%), Gaps = 13/169 (7%)
Query: 439 PSRNPPRASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMP 498
PS R +P S F E S T H S + T +++++T + ++ +SP
Sbjct: 268 PSSKDTRPAPPTTTSAFVEPSTTSHGSPSSIPTTHISARSTTSGLVEESTTYHSSPGSTQ 327
Query: 499 LV--PEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQ-QQGPMGSILSPSEK 555
+ PE T+ T+ H S T +SS PS T + P SP
Sbjct: 328 TMHFPESDTTSGRGEESTTS---HSSTTHTISS-----APSTTSALVEEPTSYHSSPGST 379
Query: 556 ETPPGGPSPQTVSASAEENIFNCEEDPGDTFL--KRWSLPGFLGSSHTS 602
T S T S E + +D T + R + LG S TS
Sbjct: 380 ATTHFPDSSTTSGRSEESTASHSSQDATGTIVLPARSTTSVLLGESTTS 428
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 34.3 bits (77), Expect = 0.38
Identities = 65/280 (23%), Positives = 101/280 (36%), Gaps = 44/280 (15%)
Query: 360 LGSTVQMGLSGSDFPDEEWLWDYEKHGHRHSMIRRV---KRFLSAHEHPSSPRRRSYRR- 415
+GS M +S S P + H ++M+ + +FL ++ PSS S
Sbjct: 718 MGSVPGMAISPSRMPQPPNMMG----AHTNNMMAQAPAQSQFLPQNQFPSSSGAMSVGMG 773
Query: 416 ----QTSDSSMFLPRDDLSPARDLLDVPSRNPPRASPTWKKSCFPEGSPTLHFSMGELST 471
QT S +P L ++L P+AS + C P LH + ST
Sbjct: 774 QPPAQTGVSQGQVPGAALPNPLNMLG------PQAS---QLPCPPVTQSPLHPTPPPAST 824
Query: 472 IRETSQTSTLQSLTPQSSVRTSPIKMPLVPEVLITAAEAPVPTSGGYHHDSATSILSSEF 531
+ +LQ TP P + ++ + P PT G + T +
Sbjct: 825 ---AAGMPSLQHTTPPGMTPPQPAAPTQPSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQ 881
Query: 532 TGVQPSKTEQQQGPM--GSILSP---SEKETPPGGPSPQTVSASAEENIFNCEEDPGDTF 586
Q T Q Q P+ S+ +P ++ TP P T + A +I N
Sbjct: 882 AAAQAQVTPQPQTPVQPPSVATPQSSQQQPTPVHAQPPGTPLSQAAASIDN--------- 932
Query: 587 LKRWSLPGFLGSSHTSLGNLSPDPMSSQPALLIDTETSSE 626
R P + S+ T+ S P P L + TET +E
Sbjct: 933 --RVPTPSSVASAETN----SQQPGPDVPVLEMKTETQAE 966
Score = 30.8 bits (68), Expect = 4.2
Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 10/148 (6%)
Query: 439 PSRNPPR-ASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKM 497
P PP+ A+PT + T + G + + +T T T+Q+ Q+ V P
Sbjct: 837 PGMTPPQPAAPTQPSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQAAA-QAQVTPQPQTP 895
Query: 498 PLVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKET 557
P V + PT H + LS Q + + + P S ++ +E +
Sbjct: 896 VQPPSVATPQSSQQQPTP--VHAQPPGTPLS------QAAASIDNRVPTPSSVASAETNS 947
Query: 558 PPGGPSPQTVSASAEENIFNCEEDPGDT 585
GP + E + E DPG++
Sbjct: 948 QQPGPDVPVLEMKTETQAEDTEPDPGES 975
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 34.3 bits (77), Expect = 0.38
Identities = 65/280 (23%), Positives = 101/280 (36%), Gaps = 44/280 (15%)
Query: 360 LGSTVQMGLSGSDFPDEEWLWDYEKHGHRHSMIRRV---KRFLSAHEHPSSPRRRSYRR- 415
+GS M +S S P + H ++M+ + +FL ++ PSS S
Sbjct: 756 MGSVPGMAISPSRMPQPPNMMG----AHTNNMMAQAPAQSQFLPQNQFPSSSGAMSVGMG 811
Query: 416 ----QTSDSSMFLPRDDLSPARDLLDVPSRNPPRASPTWKKSCFPEGSPTLHFSMGELST 471
QT S +P L ++L P+AS + C P LH + ST
Sbjct: 812 QPPAQTGVSQGQVPGAALPNPLNMLG------PQAS---QLPCPPVTQSPLHPTPPPAST 862
Query: 472 IRETSQTSTLQSLTPQSSVRTSPIKMPLVPEVLITAAEAPVPTSGGYHHDSATSILSSEF 531
+ +LQ TP P + ++ + P PT G + T +
Sbjct: 863 ---AAGMPSLQHTTPPGMTPPQPAAPTQPSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQ 919
Query: 532 TGVQPSKTEQQQGPM--GSILSP---SEKETPPGGPSPQTVSASAEENIFNCEEDPGDTF 586
Q T Q Q P+ S+ +P ++ TP P T + A +I N
Sbjct: 920 AAAQAQVTPQPQTPVQPPSVATPQSSQQQPTPVHAQPPGTPLSQAAASIDN--------- 970
Query: 587 LKRWSLPGFLGSSHTSLGNLSPDPMSSQPALLIDTETSSE 626
R P + S+ T+ S P P L + TET +E
Sbjct: 971 --RVPTPSSVASAETN----SQQPGPDVPVLEMKTETQAE 1004
Score = 30.8 bits (68), Expect = 4.2
Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 10/148 (6%)
Query: 439 PSRNPPR-ASPTWKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKM 497
P PP+ A+PT + T + G + + +T T T+Q+ Q+ V P
Sbjct: 875 PGMTPPQPAAPTQPSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQAAA-QAQVTPQPQTP 933
Query: 498 PLVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKET 557
P V + PT H + LS Q + + + P S ++ +E +
Sbjct: 934 VQPPSVATPQSSQQQPTP--VHAQPPGTPLS------QAAASIDNRVPTPSSVASAETNS 985
Query: 558 PPGGPSPQTVSASAEENIFNCEEDPGDT 585
GP + E + E DPG++
Sbjct: 986 QQPGPDVPVLEMKTETQAEDTEPDPGES 1013
>gi|166795252 hypothetical protein LOC23359 [Homo sapiens]
Length = 539
Score = 33.9 bits (76), Expect = 0.50
Identities = 44/187 (23%), Positives = 73/187 (39%), Gaps = 31/187 (16%)
Query: 395 VKRFLSAHEHPSSPR----RRSYRRQTSDSSMFLPRDDLSPARDLLDVPSRNPPRASPTW 450
++ FL HP++P + QT D F+P P PP P +
Sbjct: 208 LQMFLPQRSHPANPTCVTPHGTVLHQTLDFDEFIP-------------PLPPPPYYPPEY 254
Query: 451 KKSCFPEGSPTLH--FSMGELSTIRETSQTST-----LQSLTPQSSVRTSP--IKMPLVP 501
+ E LH F+ T+ + + S + P +V P ++ +
Sbjct: 255 TCTPSTEAQRGLHLDFAPSPFGTLYDVAINSPGLLYPAELPPPYEAVVGQPPASQVTSIG 314
Query: 502 EVLITAAEAPVPTSGGYHHD---SATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKETP 558
+ + ++ TS G+ +TS+L SE T P + GP+G+ +PSE P
Sbjct: 315 QQVAESSSGDPNTSAGFSTPVPADSTSLLVSEGTAT-PGSSPSPDGPVGAP-APSEPALP 372
Query: 559 PGGPSPQ 565
PG SP+
Sbjct: 373 PGHVSPE 379
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 33.9 bits (76), Expect = 0.50
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 476 SQTSTLQSLTPQSSVRTSPI----KMPLVPEVLITAAEAPVPTSGGYHHDSATSILSSEF 531
+QT T +T ++V +P + P + T P PT G + T I ++
Sbjct: 4124 TQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTT 4183
Query: 532 TGVQPSKTEQQQGP-----MGSILSPSEKETPPGGPSPQT 566
P+ T Q GP I + PP +PQT
Sbjct: 4184 VTPTPTPTGTQTGPPTHTSTAPIAELTTSNPPPESSTPQT 4223
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 33.9 bits (76), Expect = 0.50
Identities = 37/125 (29%), Positives = 50/125 (40%), Gaps = 13/125 (10%)
Query: 440 SRNPPRASPTWKKS-CFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMP 498
+R P RASPT K S P G+P+ G ST T +ST S T P P
Sbjct: 341 TRTPSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSST------ASPTGTPPRASP 394
Query: 499 LVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSEKETP 558
+ P P + S TSI + T P++T + P G+ + +P
Sbjct: 395 TGTPSTASLTRKP-PRASPTGMLSRTSITKMDST-ASPTRTPPRASPTGT----PPRASP 448
Query: 559 PGGPS 563
G PS
Sbjct: 449 TGTPS 453
Score = 32.3 bits (72), Expect = 1.4
Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 11/112 (9%)
Query: 439 PSRNPPRASPT-WKKSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRT-SPIK 496
P+R PPRASPT P G+P+ G ST T ST +P S T SP
Sbjct: 430 PTRTPPRASPTGTPPRASPTGTPSRASPTGTQSTASPTGSPST---ASPTGSPSTASPTG 486
Query: 497 MPLVPEVLITAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGS 548
P A+ P+ +T+ ++ + P+ T P GS
Sbjct: 487 SP------SRASLTRTPSRASLTKMESTASITRTPSRASPTWTPSTASPTGS 532
>gi|87196343 PDZ domain containing 2 [Homo sapiens]
Length = 2839
Score = 33.9 bits (76), Expect = 0.50
Identities = 44/204 (21%), Positives = 76/204 (37%), Gaps = 27/204 (13%)
Query: 404 HPSSPRRRSYRRQTSDSS-------MFLPRDDLSPARDLLDVPSRNPPRAS-----PTWK 451
HP R RR S S LP+ SP+ L + +NPP S K
Sbjct: 2384 HPGDAAARLLRRSLSSCSENQSEAGTLLPQMAKSPSIMTLTISRQNPPETSSKGSDSELK 2443
Query: 452 KSCFPEGSPTLHFSMGELSTIRETSQTSTLQSLTPQSSVRTSPIKMPLVPEVLITAAEAP 511
KS P G PT ++ S ++ + +P S + ++ +P++ +E
Sbjct: 2444 KSLGPLGIPTPTMTLA--SPVKRNKSSVRHTQPSPVSRSKLQELRALSMPDLDKLCSED- 2500
Query: 512 VPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSILSPSE--KETPPGGPSPQTVSA 569
+ +++L + P ++ P G + P + PGG P+T +A
Sbjct: 2501 -------YSAGPSAVLFKTELEITPRRSPGP--PAGGVSCPEKGGNRACPGGSGPKTSAA 2551
Query: 570 SAEENIFNCEEDPGD-TFLKRWSL 592
+ + E D F + WS+
Sbjct: 2552 ETPSSASDTGEAAQDLPFRRSWSV 2575
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.9 bits (76), Expect = 0.50
Identities = 56/204 (27%), Positives = 78/204 (38%), Gaps = 51/204 (25%)
Query: 396 KRFLSAHEHPSSPRRRSYRRQTSDSSMFLPRDDLSPARD--------LLDVPSRNPPRAS 447
KR S P+ RR++R ++DS+ D S +R + R+P AS
Sbjct: 244 KRKRSRSTTPAPKSRRAHRSTSADSAS---SSDTSRSRSRSAAAKTHTTALAGRSPSPAS 300
Query: 448 PTWKKSCFPEGSPTLHFSMGELSTIRETS-QTSTLQSLTP----------QSSVRTSPIK 496
+ P P G ST R +S +T+T Q +P +S+ R SP
Sbjct: 301 GRRGEGDAPFSEP------GTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPS- 353
Query: 497 MPLVPEVLITAAEAPVPTS------GGYHHDSATSILSSEFTGVQPSKTEQQQGPMGSIL 550
PE T E P PT GG AT+ LS E V P S
Sbjct: 354 ----PERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQE--PVNPP----------SEA 397
Query: 551 SPSEKETPPGGPSPQTVSASAEEN 574
SP+ +PP P S+S+E +
Sbjct: 398 SPTRDRSPPKSPEKLPQSSSSESS 421
>gi|167234419 thyroid hormone receptor associated protein 3 [Homo
sapiens]
Length = 955
Score = 33.9 bits (76), Expect = 0.50
Identities = 51/206 (24%), Positives = 78/206 (37%), Gaps = 30/206 (14%)
Query: 397 RFLSAHEHPSSPRRRSYRRQTSDSSMFLP-------RDDLSPARDLLDVPSRNPP--RAS 447
R S H S +R+S + + S S P + D + + S++ +S
Sbjct: 161 RSSSNHSRVESSKRKSAKEKKSSSKDSRPSQAAGDNQGDEAKEQTFSGGTSQDTKASESS 220
Query: 448 PTWKKSCFPEGSPTLHFSMGELSTI-RETSQTSTLQSLTPQS-SVRTSPIKMPLVPEVLI 505
W + + GS + ++ ELS R + S LQS+ + S R SP+ P P
Sbjct: 221 KPWPDATYGTGSASRASAVSELSPRERSPALKSPLQSVVVRRRSPRPSPVPKPSPPLSST 280
Query: 506 TAAEAPVPTSGGYHHDSATSILSSEFTGVQPSKTEQQQGPMGS-ILSPSEKETPPGGPSP 564
+ + +P+ GY S T Q Q GS LSPS K++P G P
Sbjct: 281 SQMGSTLPSGAGYQ-----------------SGTHQGQFDHGSGSLSPS-KKSPVGKSPP 322
Query: 565 QTVSASAEENIFNCEEDPGDTFLKRW 590
T S G + KR+
Sbjct: 323 STGSTYGSSQKEESAASGGAAYTKRY 348
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,671,766
Number of Sequences: 37866
Number of extensions: 1327220
Number of successful extensions: 4796
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 4559
Number of HSP's gapped (non-prelim): 360
length of query: 668
length of database: 18,247,518
effective HSP length: 109
effective length of query: 559
effective length of database: 14,120,124
effective search space: 7893149316
effective search space used: 7893149316
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.