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Search of human proteins with 115527060
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|115527060 clathrin, light polypeptide A isoform c [Homo
sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|115527060 clathrin, light polypeptide A isoform c [Homo sapiens] 478 e-135
gi|6005993 clathrin, light polypeptide A isoform b [Homo sapiens] 469 e-133
gi|4502899 clathrin, light polypeptide A isoform a [Homo sapiens] 431 e-121
gi|6005995 clathrin, light polypeptide isoform b [Homo sapiens] 279 1e-75
gi|4502901 clathrin, light polypeptide isoform a [Homo sapiens] 239 2e-63
gi|4506467 radixin [Homo sapiens] 38 0.009
gi|148839382 ring finger protein 169 [Homo sapiens] 38 0.009
gi|153792074 proline rich 12 [Homo sapiens] 38 0.009
gi|239745153 PREDICTED: similar to Putative golgin subfamily A m... 37 0.015
gi|239745127 PREDICTED: similar to Putative golgin subfamily A m... 37 0.015
gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik... 37 0.019
gi|4505257 moesin [Homo sapiens] 37 0.019
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap... 36 0.033
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C... 36 0.033
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ... 36 0.033
gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi... 36 0.033
gi|153791282 nuclear RNA export factor 2B [Homo sapiens] 35 0.043
gi|14277694 nuclear RNA export factor 2 [Homo sapiens] 35 0.043
gi|13430854 nuclear RNA export factor 2 [Homo sapiens] 35 0.043
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 35 0.043
gi|31377566 ring finger protein 168 [Homo sapiens] 35 0.043
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 35 0.043
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi... 35 0.043
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 35 0.056
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 35 0.073
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 35 0.073
gi|130980075 centromere protein J [Homo sapiens] 35 0.073
gi|33457350 OTU domain containing 5 isoform a [Homo sapiens] 35 0.073
gi|209977021 OTU domain containing 5 isoform b [Homo sapiens] 35 0.073
gi|169218106 PREDICTED: hypothetical protein, partial [Homo sapi... 34 0.096
>gi|115527060 clathrin, light polypeptide A isoform c [Homo sapiens]
Length = 236
Score = 478 bits (1231), Expect = e-135
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236
AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236
>gi|6005993 clathrin, light polypeptide A isoform b [Homo sapiens]
Length = 248
Score = 469 bits (1208), Expect = e-133
Identities = 236/248 (95%), Positives = 236/248 (95%), Gaps = 12/248 (4%)
Query: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 181 ------------AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 228
AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 229 LKQAPLVH 236
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>gi|4502899 clathrin, light polypeptide A isoform a [Homo sapiens]
Length = 218
Score = 431 bits (1108), Expect = e-121
Identities = 218/236 (92%), Positives = 218/236 (92%), Gaps = 18/236 (7%)
Query: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 162
Query: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236
AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 163 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>gi|6005995 clathrin, light polypeptide isoform b [Homo sapiens]
Length = 229
Score = 279 bits (714), Expect = 1e-75
Identities = 139/215 (64%), Positives = 165/215 (76%), Gaps = 1/215 (0%)
Query: 21 NGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHGEPPG-GPDAVDGVM 79
+G A EEDPAAAFLAQQESEIAGIENDE F G P G G G + + +
Sbjct: 13 SGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSGAGSEDMGTTV 72
Query: 80 NGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKA 139
NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+ E EW+EKA
Sbjct: 73 NGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVTEQEWREKA 132
Query: 140 IKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVAAEEAFVNDIDESSPGTEW 199
K+LEEW RQ EQ++K K NNR+AD+AFY+QP AD+IGYVA+EEAFV + E +PGTEW
Sbjct: 133 KKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKESKEETPGTEW 192
Query: 200 ERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 234
E+VA+LCDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 193 EKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227
>gi|4502901 clathrin, light polypeptide isoform a [Homo sapiens]
Length = 211
Score = 239 bits (610), Expect = 2e-63
Identities = 126/215 (58%), Positives = 148/215 (68%), Gaps = 19/215 (8%)
Query: 21 NGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHGEPPG-GPDAVDGVM 79
+G A EEDPAAAFLAQQESEIAGIENDE F G P G G G + + +
Sbjct: 13 SGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSGAGSEDMGTTV 72
Query: 80 NGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKA 139
NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+ E EW+EKA
Sbjct: 73 NGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVTEQEWREKA 132
Query: 140 IKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVAAEEAFVNDIDESSPGTEW 199
K+LEEW RQ EQ++K K NNR A+EEAFV + E +PGTEW
Sbjct: 133 KKDLEEWNQRQSEQVEKNKINNR------------------ASEEAFVKESKEETPGTEW 174
Query: 200 ERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 234
E+VA+LCDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 175 EKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>gi|4506467 radixin [Homo sapiens]
Length = 583
Score = 37.7 bits (86), Expect = 0.009
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 104 QSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIK--ELEEWYARQDEQLQKTKANN 161
+ E E I + +EE MERL+ ++ + K + E +E+ K EL++ R E+ ++ +
Sbjct: 334 EKEKERIEREKEELMERLKQIEEQTIKAQKELEEQTRKALELDQERKRAKEEAERLEKER 393
Query: 162 RVADEA 167
R A+EA
Sbjct: 394 RAAEEA 399
>gi|148839382 ring finger protein 169 [Homo sapiens]
Length = 708
Score = 37.7 bits (86), Expect = 0.009
Identities = 42/159 (26%), Positives = 63/159 (39%), Gaps = 27/159 (16%)
Query: 9 APAGAPGGP---ALGNGVAGAGEEDPAAAFLAQQESEIAG-----IENDEAFAILDGGAP 60
A A PG P A G G A D Q +SE+ G + + DGGA
Sbjct: 96 ADAAGPGCPRCRARGPGWARRRARDDG-----QADSEVLGECARRSQPERCRPRRDGGAA 150
Query: 61 --GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQM 118
GP+P EP P D + +S+ L+ E ES+RK REE++
Sbjct: 151 AAGPRPEQEPRAAPAEPDFIFRAPI------------KLSKPGELREEYESLRKLREEKL 198
Query: 119 ERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 157
+ + + K E E ++++E R + + KT
Sbjct: 199 QEEKPSEDQIHKLLPEDTETGKRKMDEQKKRDEPLVLKT 237
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 37.7 bits (86), Expect = 0.009
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 6 PFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGG----APG 61
P G PA P GP +GAG E P + E+ N E ++ G AP
Sbjct: 981 PPGPPAYDPYGPYCPGRASGAGPETPGLGLDPNKPPELPSTVNAEPLGLIQSGPHQAAPP 1040
Query: 62 PQPHGEPPGGP 72
P P PP P
Sbjct: 1041 PPPPPPPPPAP 1051
>gi|239745153 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 37.0 bits (84), Expect = 0.015
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 102 RLQSEPESIRKWREEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQDEQLQKTKA 159
R Q E + WR+E+ R + D R+QE E W+ E+ I+ELEE Q+E+L++ +
Sbjct: 398 REQEEKRQEKMWRQEKKMREQ--DEKIREQEEEMWRQEEKIRELEEMMQDQEEKLREVEE 455
Query: 160 NNRVADEAFYKQ 171
+ +E +Q
Sbjct: 456 KMQEEEEKMQEQ 467
Score = 33.5 bits (75), Expect = 0.16
Identities = 27/131 (20%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 103 LQSEPESIRKWREEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQDEQLQKTKAN 160
L+ + + WR+E E++ + R+QE + W+ E+ I+E EE Q+E++ + +
Sbjct: 318 LKIREQEEKMWRQE--EKMHEQEEKIREQEDKMWRQEEKIREQEEKIREQEEKMWRQEEK 375
Query: 161 NRVADEAFYKQPFADVIGYVAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVS 220
R DE +Q + +E + + +E W + ++ + + K +Q +++
Sbjct: 376 IREQDEKIQEQE-----EEMWRQEEKIREQEEKRQEKMWRQEKKMREQDEKIREQEEEMW 430
Query: 221 RMRSVLISLKQ 231
R + L++
Sbjct: 431 RQEEKIRELEE 441
Score = 31.6 bits (70), Expect = 0.62
Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 99 QVDRLQSEPESIRKWREE---QMERLEALDANSRKQEAEWKE--KAIKELEEWYARQDEQ 153
Q +++ + E IR+ EE Q E++ L+ + QE + +E + ++E EE Q+E+
Sbjct: 411 QEKKMREQDEKIREQEEEMWRQEEKIRELEEMMQDQEEKLREVEEKMQEEEEKMQEQEEK 470
Query: 154 LQKTKANNRVADEAFYKQ 171
+Q+ + + +E ++Q
Sbjct: 471 IQRQEEKIQEQEEKTWRQ 488
Score = 28.5 bits (62), Expect = 5.3
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 102 RLQSEPESIRKWR---EEQMERLEALDANSRKQEAEWKEKAIK--ELEEWYARQDEQLQK 156
+LQ++ E W ++Q E++ + ++QE + E+ +K E EE RQ+E++ +
Sbjct: 277 KLQAQVEENELWNLLNQQQEEKMWRQEEKIQEQEEKMCEQELKIREQEEKMWRQEEKMHE 336
Query: 157 TKANNRVADEAFYKQ 171
+ R ++ ++Q
Sbjct: 337 QEEKIREQEDKMWRQ 351
Score = 27.7 bits (60), Expect = 9.0
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 92 DSYAAISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQD 151
D + +V+ E E + +EE+++R E + ++E W+++ + + EE Q+
Sbjct: 445 DQEEKLREVEEKMQEEEEKMQEQEEKIQRQE--EKIQEQEEKTWRQEKLLKQEEKIWEQE 502
Query: 152 EQLQKTKANNRVADEAFYKQ 171
E++ + + +E +Q
Sbjct: 503 EKMWRQEEKMWEQEEKMQEQ 522
>gi|239745127 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 37.0 bits (84), Expect = 0.015
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 102 RLQSEPESIRKWREEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQDEQLQKTKA 159
R Q E + WR+E+ R + D R+QE E W+ E+ I+ELEE Q+E+L++ +
Sbjct: 398 REQEEKRQEKMWRQEKKMREQ--DEKIREQEEEMWRQEEKIRELEEMMQDQEEKLREVEE 455
Query: 160 NNRVADEAFYKQ 171
+ +E +Q
Sbjct: 456 KMQEEEEKMQEQ 467
Score = 33.5 bits (75), Expect = 0.16
Identities = 27/131 (20%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 103 LQSEPESIRKWREEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQDEQLQKTKAN 160
L+ + + WR+E E++ + R+QE + W+ E+ I+E EE Q+E++ + +
Sbjct: 318 LKIREQEEKMWRQE--EKMHEQEEKIREQEDKMWRQEEKIREQEEKIREQEEKMWRQEEK 375
Query: 161 NRVADEAFYKQPFADVIGYVAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVS 220
R DE +Q + +E + + +E W + ++ + + K +Q +++
Sbjct: 376 IREQDEKIQEQE-----EEMWRQEEKIREQEEKRQEKMWRQEKKMREQDEKIREQEEEMW 430
Query: 221 RMRSVLISLKQ 231
R + L++
Sbjct: 431 RQEEKIRELEE 441
Score = 31.6 bits (70), Expect = 0.62
Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 99 QVDRLQSEPESIRKWREE---QMERLEALDANSRKQEAEWKE--KAIKELEEWYARQDEQ 153
Q +++ + E IR+ EE Q E++ L+ + QE + +E + ++E EE Q+E+
Sbjct: 411 QEKKMREQDEKIREQEEEMWRQEEKIRELEEMMQDQEEKLREVEEKMQEEEEKMQEQEEK 470
Query: 154 LQKTKANNRVADEAFYKQ 171
+Q+ + + +E ++Q
Sbjct: 471 IQRQEEKIQEQEEKTWRQ 488
Score = 28.5 bits (62), Expect = 5.3
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 102 RLQSEPESIRKWR---EEQMERLEALDANSRKQEAEWKEKAIK--ELEEWYARQDEQLQK 156
+LQ++ E W ++Q E++ + ++QE + E+ +K E EE RQ+E++ +
Sbjct: 277 KLQAQVEENELWNLLNQQQEEKMWRQEEKIQEQEEKMCEQELKIREQEEKMWRQEEKMHE 336
Query: 157 TKANNRVADEAFYKQ 171
+ R ++ ++Q
Sbjct: 337 QEEKIREQEDKMWRQ 351
Score = 27.7 bits (60), Expect = 9.0
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 92 DSYAAISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQD 151
D + +V+ E E + +EE+++R E + ++E W+++ + + EE Q+
Sbjct: 445 DQEEKLREVEEKMQEEEEKMQEQEEKIQRQE--EKIQEQEEKTWRQEKLLKQEEKIWEQE 502
Query: 152 EQLQKTKANNRVADEAFYKQ 171
E++ + + +E +Q
Sbjct: 503 EKMWRQEEKMWEQEEKMQEQ 522
>gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like
protein 6 [Homo sapiens]
Length = 724
Score = 36.6 bits (83), Expect = 0.019
Identities = 30/138 (21%), Positives = 64/138 (46%), Gaps = 20/138 (14%)
Query: 99 QVDRLQSEPESIRK-----WREEQM-----ERLEALDANSRKQE--AEWKEKAIKELEEW 146
Q +++ + E IR+ WR+E+ E++ + R+QE + +E+ + E EE
Sbjct: 562 QEEKMHDQEEKIREQEEKVWRQEEKIREQEEKIREQEEKIREQEEMTQEQEEKMGEQEEK 621
Query: 147 YARQDEQLQKTKANNRVADEAFYKQPFADVIGYVAAEEAFVNDIDESSPGTE---WERVA 203
Q+E++Q+ + R +E +Q + +E + + +E E WE+
Sbjct: 622 MCEQEEKMQEQEEKMRRQEEKIREQE-----KKIREQEEKIREQEEMMQEQEEKMWEQEE 676
Query: 204 RLCDFNPKSSKQAKDVSR 221
++C+ K +Q + + R
Sbjct: 677 KMCEQEEKMQEQEEKMRR 694
Score = 32.3 bits (72), Expect = 0.36
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 99 QVDRLQSEPESIRK-----WREEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQD 151
Q +++ + E IRK WR+E E++ + R+QE + W+ E+ I+E EE Q+
Sbjct: 541 QKEKIHEQEEKIRKQEEKMWRQE--EKMHDQEEKIREQEEKVWRQEEKIREQEEKIREQE 598
Query: 152 EQLQKTKANNRVADEAFYKQ 171
E++++ + + +E +Q
Sbjct: 599 EKIREQEEMTQEQEEKMGEQ 618
Score = 30.4 bits (67), Expect = 1.4
Identities = 25/123 (20%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 104 QSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRV 163
+ E WR+E+ R E + +K++ +E+ I++ EE RQ+E++ + R
Sbjct: 517 EKRQEQEEMWRQEEKIR-EQEEIWRQKEKIHEQEEKIRKQEEKMWRQEEKMHDQEEKIRE 575
Query: 164 ADEAFYKQ--PFADVIGYVAAEEAFVNDIDESSPGTE---WERVARLCDFNPKSSKQAKD 218
+E ++Q + + +E + + +E + E E+ ++C+ K +Q +
Sbjct: 576 QEEKVWRQEEKIREQEEKIREQEEKIREQEEMTQEQEEKMGEQEEKMCEQEEKMQEQEEK 635
Query: 219 VSR 221
+ R
Sbjct: 636 MRR 638
Score = 30.0 bits (66), Expect = 1.8
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 99 QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTK 158
Q +++ + E I++W E+ E+ E + R+QE + I+E EE RQ+E + + +
Sbjct: 359 QEEKMWRQEEKIQEWEEKIQEQEEKI----REQEEK-----IREQEEKMRRQEEMMWEKE 409
Query: 159 ANNRVADEAFYKQ 171
R +E +++
Sbjct: 410 EKMRRQEEMMWEK 422
Score = 28.1 bits (61), Expect = 6.9
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 97 ISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK-----------EKAIKELEE 145
I +++ E E IR+ E++ E E + ++QE E K E+ I+E EE
Sbjct: 440 IRELEEKMHEQEKIREQEEKRQEE-EKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEE 498
Query: 146 WYARQDEQLQK 156
RQ+E++ +
Sbjct: 499 KMWRQEEKIHE 509
>gi|4505257 moesin [Homo sapiens]
Length = 577
Score = 36.6 bits (83), Expect = 0.019
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 104 QSEPESIRKWREEQMERLEALDANSRK--QEAEWKEKAIKELEEWYARQDEQLQKTKANN 161
+ E E I + +EE MERL+ ++ ++K QE E + + ELE+ R + +K
Sbjct: 334 EKEKEKIEREKEELMERLKQIEEQTKKAQQELEEQTRRALELEQERKRAQSEAEKLAKER 393
Query: 162 RVADEA 167
+ A+EA
Sbjct: 394 QEAEEA 399
Score = 30.4 bits (67), Expect = 1.4
Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 34/138 (24%)
Query: 102 RLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIK-------------------- 141
R QSE E + K R+E E EAL SR Q+ ++ A++
Sbjct: 381 RAQSEAEKLAKERQEAEEAKEALLQASRDQKKTQEQLALEMAELTARISQLEMARQKKES 440
Query: 142 ELEEWYARQ---DEQLQKTKANNR-------VADEAFYKQPFADVIGYVAA----EEAFV 187
E EW + E L+KT+A + VA+ A +Q D G A+ +A
Sbjct: 441 EAVEWQQKAQMVQEDLEKTRAELKTAMSTPHVAEPAENEQDEQDENGAEASADLRADAMA 500
Query: 188 NDIDESSPGTEWERVARL 205
D E TE E+ R+
Sbjct: 501 KDRSEEERTTEAEKNERV 518
>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
sapiens]
Length = 693
Score = 35.8 bits (81), Expect = 0.033
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 75 VDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEAL-DANSRKQEA 133
V+G+ Q N S + Q RLQ + E +R+ +++ E L + N R +E
Sbjct: 311 VEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQERLCEQNERLRE- 369
Query: 134 EWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQ 171
++K ++E E +Q+++L+K + R +E KQ
Sbjct: 370 --QQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQ 405
Score = 28.5 bits (62), Expect = 5.3
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 97 ISQVDRLQSEPESIR---KWREEQMERLEALDANSRKQEAEWK---------EKAIKELE 144
+ + +RL + E +R K +EQ ERL + RKQE + EK + + E
Sbjct: 354 VREQERLCEQNERLREQQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQE 413
Query: 145 EWYARQDEQLQK 156
E +++E+LQK
Sbjct: 414 ERLWKKEERLQK 425
>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
isoform 1 [Homo sapiens]
Length = 693
Score = 35.8 bits (81), Expect = 0.033
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 75 VDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEAL-DANSRKQEA 133
V+G+ Q N S + Q RLQ + E +R+ +++ E L + N R +E
Sbjct: 311 VEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQERLCEQNERLRE- 369
Query: 134 EWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQ 171
++K ++E E +Q+++L+K + R +E KQ
Sbjct: 370 --QQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQ 405
Score = 28.5 bits (62), Expect = 5.3
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 97 ISQVDRLQSEPESIR---KWREEQMERLEALDANSRKQEAEWK---------EKAIKELE 144
+ + +RL + E +R K +EQ ERL + RKQE + EK + + E
Sbjct: 354 VREQERLCEQNERLREQQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQE 413
Query: 145 EWYARQDEQLQK 156
E +++E+LQK
Sbjct: 414 ERLWKKEERLQK 425
>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
sapiens]
Length = 482
Score = 35.8 bits (81), Expect = 0.033
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 102 RLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN 161
R++ E E K R+E+ ER K + +W+E+ KE EE ++ E+ +K +A
Sbjct: 87 RIKKEKEEAAKKRQEEQER---------KLKEQWEEQQRKEREEEEQKRQEKKEKEEALQ 137
Query: 162 RVADEA 167
++ D+A
Sbjct: 138 KMLDQA 143
>gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo
sapiens]
Length = 693
Score = 35.8 bits (81), Expect = 0.033
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 75 VDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEAL-DANSRKQEA 133
V+G+ Q N S + Q RLQ + E +R+ +++ E L + N R +E
Sbjct: 311 VEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQEAQRVREQERLCEQNERLRE- 369
Query: 134 EWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQ 171
++K ++E E +Q+++L+K + R +E KQ
Sbjct: 370 --QQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQ 405
Score = 28.5 bits (62), Expect = 5.3
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 97 ISQVDRLQSEPESIR---KWREEQMERLEALDANSRKQEAEWK---------EKAIKELE 144
+ + +RL + E +R K +EQ ERL + RKQE + EK + + E
Sbjct: 354 VREQERLCEQNERLREQQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQE 413
Query: 145 EWYARQDEQLQK 156
E +++E+LQK
Sbjct: 414 ERLWKKEERLQK 425
>gi|153791282 nuclear RNA export factor 2B [Homo sapiens]
Length = 626
Score = 35.4 bits (80), Expect = 0.043
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 78 VMNGEYYQESNGPTDSYAAIS-QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK 136
++N E + P ++ +A S V L S E +EQ E ++A A S + EW
Sbjct: 534 IVNDELFVRDASPQETQSAFSIPVSTLSSSSEP--SLSQEQQEMVQAFSAQSG-MKLEWS 590
Query: 137 EKAIKELEEWYARQDEQLQKTKANNRVADEAF 168
+K +++ E Y R + + ++ EAF
Sbjct: 591 QKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAF 622
>gi|14277694 nuclear RNA export factor 2 [Homo sapiens]
Length = 626
Score = 35.4 bits (80), Expect = 0.043
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 78 VMNGEYYQESNGPTDSYAAIS-QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK 136
++N E + P ++ +A S V L S E +EQ E ++A A S + EW
Sbjct: 534 IVNDELFVRDASPQETQSAFSIPVSTLSSSSEP--SLSQEQQEMVQAFSAQSG-MKLEWS 590
Query: 137 EKAIKELEEWYARQDEQLQKTKANNRVADEAF 168
+K +++ E Y R + + ++ EAF
Sbjct: 591 QKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAF 622
>gi|13430854 nuclear RNA export factor 2 [Homo sapiens]
Length = 626
Score = 35.4 bits (80), Expect = 0.043
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 78 VMNGEYYQESNGPTDSYAAIS-QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWK 136
++N E + P ++ +A S V L S E +EQ E ++A A S + EW
Sbjct: 534 IVNDELFVRDASPQETQSAFSIPVSTLSSSSEP--SLSQEQQEMVQAFSAQSG-MKLEWS 590
Query: 137 EKAIKELEEWYARQDEQLQKTKANNRVADEAF 168
+K +++ E Y R + + ++ EAF
Sbjct: 591 QKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAF 622
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 35.4 bits (80), Expect = 0.043
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 5 DPFGAPAGAPGGPA-------LGNGVAG----AGEEDPAAAFLAQQESEIAGIENDEAFA 53
D P G PG P+ L N +G GE+ P + GI+ D F
Sbjct: 429 DGLPGPPGPPGPPSPEFETETLHNKESGFPGLRGEQGPKGNL------GLKGIKGDSGFC 482
Query: 54 ILDGGAPGPQPHGEP-PGGPDAVDGV 78
DGG P P GEP P GP + G+
Sbjct: 483 ACDGGVPNTGPPGEPGPPGPWGLIGL 508
>gi|31377566 ring finger protein 168 [Homo sapiens]
Length = 571
Score = 35.4 bits (80), Expect = 0.043
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 85 QESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERL----EALDANSRKQEAEWKEKAI 140
QES D Y + RL S+P +R+ EE++ ++ A + K E+ ++ +
Sbjct: 95 QESEEVADDYQPV----RLLSKPGELRREYEEEISKVAAERRASEEEENKASEEYIQRLL 150
Query: 141 KELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVAAEEAFVNDIDESSPGTEWE 200
E EE RQ E+ ++ +DE ++ D +N+ E S
Sbjct: 151 AEEEEEEKRQAEKRRRAMEEQLKSDEELARKLSID-----------INNFCEGSISASPL 199
Query: 201 RVARLCDFNPKSSKQAKDVSR 221
+ PKS K++K+ R
Sbjct: 200 NSRKSDPVTPKSEKKSKNKQR 220
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 35.4 bits (80), Expect = 0.043
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 5 DPFGAPAGAPGGPA-------LGNGVAG----AGEEDPAAAFLAQQESEIAGIENDEAFA 53
D P G PG P+ L N +G GE+ P + GI+ D F
Sbjct: 428 DGLPGPPGPPGPPSPEFETETLHNKESGFPGLRGEQGPKGNL------GLKGIKGDSGFC 481
Query: 54 ILDGGAPGPQPHGEP-PGGPDAVDGV 78
DGG P P GEP P GP + G+
Sbjct: 482 ACDGGVPNTGPPGEPGPPGPWGLIGL 507
>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
sapiens]
Length = 693
Score = 35.4 bits (80), Expect = 0.043
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 75 VDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEAL-DANSRKQEA 133
V+G+ Q N S + Q RLQ + E +R+ +++ E L + N R +E
Sbjct: 311 VEGLEGKLQSQVENNQALSLLSKEQKQRLQEQEEMLREQEVQRVREQERLCEQNERLRE- 369
Query: 134 EWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQ 171
++K ++E E +Q+++L+K + R +E KQ
Sbjct: 370 --QQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQ 405
Score = 28.5 bits (62), Expect = 5.3
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 97 ISQVDRLQSEPESIR---KWREEQMERLEALDANSRKQEAEWK---------EKAIKELE 144
+ + +RL + E +R K +EQ ERL + RKQE + EK + + E
Sbjct: 354 VREQERLCEQNERLREQQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQE 413
Query: 145 EWYARQDEQLQK 156
E +++E+LQK
Sbjct: 414 ERLWKKEERLQK 425
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 35.0 bits (79), Expect = 0.056
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 85 QESNGPTDSYAAISQ--VDRLQSEPESIRKWREEQMERLEALDANSRKQE------AEWK 136
++ GP+ + Q + +L+ E E ++ EE+++RLE L+A +++E E K
Sbjct: 331 EKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKRKEEERLEQEKRERK 390
Query: 137 EKAIKELEEWYARQDEQLQKTKANNRVADEAFYK 170
++ KE +E ++ + L K++ R EA K
Sbjct: 391 KQKEKERKERLKKEGKLLTKSQREARARAEATLK 424
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 34.7 bits (78), Expect = 0.073
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 99 QVDRLQSEPESIRK-----WREEQMERLEALDANSRKQEAEWK-EKAIKELEEWYARQDE 152
Q D++ + E IR+ WR+E+ R E + ++E WK E+ I+E EE Q+E
Sbjct: 568 QEDKMWRQEEKIREQEEKVWRQEEKIR-EQEEKRQEQEEKMWKQEEKIREQEEKIQEQEE 626
Query: 153 QLQKTKANNRVADEAFYKQ 171
++++ + R +E +Q
Sbjct: 627 KIREQEEKIREQEEMTQEQ 645
Score = 32.0 bits (71), Expect = 0.48
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 99 QVDRLQSEPESIRK-----WR-EEQMERLEALDANSRKQEAE--WK-EKAIKELEEWYAR 149
Q ++++ + E IR+ WR EE++ E + ++QE E W+ E+ I E EE + R
Sbjct: 435 QEEKIREQEEKIREQEKKMWRQEEKIHEQEKIREEEKRQEQEEMWRQEEKIHEQEEIW-R 493
Query: 150 QDEQLQKTKANNRVADEAFYKQ 171
Q E++ + + R +E ++Q
Sbjct: 494 QKEKMHEQEEKIRKQEEKVWRQ 515
Score = 30.8 bits (68), Expect = 1.1
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 99 QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTK 158
Q +++ + E I++W E+ E+ E + R+QE + I+E EE RQ+E + + +
Sbjct: 298 QEEKMWRQEEKIQEWEEKIQEQEEKI----REQEEK-----IREQEEKMRRQEEMMWEKE 348
Query: 159 ANNRVADEAFYKQPFADVIGYVAAEEAFVNDIDESSPGTE---WERVARLCDFNPKSSKQ 215
R +E +++ + +E + + +E E WE+ ++ + K +Q
Sbjct: 349 EKMRRQEEMMWEKE-----EKMRRQEEMMWEKEEKMRRQEEMMWEKEEKIRELEEKMHEQ 403
Query: 216 AK 217
K
Sbjct: 404 EK 405
Score = 30.4 bits (67), Expect = 1.4
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 99 QVDRLQSEPESIRK-----WREEQ----MERLEALDANSRKQEAEWKEKAIKELEEWYAR 149
Q ++++ + E IR+ WR+E+ E + + +QE W+E+ +E E+ R
Sbjct: 515 QEEKIREQEEKIREQEEKMWRQEEKIREQEEMWREEEKMHEQEKIWEEEKRQEQEDKMWR 574
Query: 150 QDEQLQK 156
Q+E++++
Sbjct: 575 QEEKIRE 581
Score = 30.4 bits (67), Expect = 1.4
Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 114 REEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQ 171
R+EQ +++ + R+QE + W+ E+ I+E EE Q+E++ K + R +E +Q
Sbjct: 565 RQEQEDKMWRQEEKIREQEEKVWRQEEKIREQEEKRQEQEEKMWKQEEKIREQEEKIQEQ 624
Query: 172 PFADVIGYVAAEEAFVNDIDESSPGTE---WERVARLCDFNPKSSKQAKDVSR 221
+ +E + + +E + E E+ ++C+ K +Q + + R
Sbjct: 625 E-----EKIREQEEKIREQEEMTQEQEEKMGEQEEKMCEQEEKMQEQEETMWR 672
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 99 QVDRLQSEPESIRKWREEQM-----ERLEALDANSRKQEAEWKEKAIK--ELEEWYARQD 151
Q +++Q + E++ WR+E+ +++ + R+QE +E+ K E EE Q+
Sbjct: 659 QEEKMQEQEETM--WRQEEKIREQEKKIREQEEKIREQEEMMQEQEEKMWEQEEKMCEQE 716
Query: 152 EQLQKTKANNRVADEAFYKQ 171
E++Q+ + R +E ++Q
Sbjct: 717 EKMQEQEEKMRRQEEKMWEQ 736
Score = 30.0 bits (66), Expect = 1.8
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 99 QVDRLQSEPESIRK-----WREEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQD 151
Q +++ + E IRK WR+E E++ + R+QE + W+ E+ I+E EE + ++
Sbjct: 494 QKEKMHEQEEKIRKQEEKVWRQE--EKIREQEEKIREQEEKMWRQEEKIREQEEMWREEE 551
Query: 152 EQLQKTK 158
+ ++ K
Sbjct: 552 KMHEQEK 558
Score = 30.0 bits (66), Expect = 1.8
Identities = 24/135 (17%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 99 QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTK 158
Q ++ Q + E + W++E+ R + ++++ +E+ I+E EE Q+E++ + +
Sbjct: 596 QEEKRQEQEEKM--WKQEEKIREQEEKIQEQEEKIREQEEKIREQEEMTQEQEEKMGEQE 653
Query: 159 ANNRVADEAFYKQ---------PFADVIGYVAAEEAFVNDIDESSPGTE---WERVARLC 206
+E +Q + + +E + + +E E WE+ ++C
Sbjct: 654 EKMCEQEEKMQEQEETMWRQEEKIREQEKKIREQEEKIREQEEMMQEQEEKMWEQEEKMC 713
Query: 207 DFNPKSSKQAKDVSR 221
+ K +Q + + R
Sbjct: 714 EQEEKMQEQEEKMRR 728
Score = 28.1 bits (61), Expect = 6.9
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 113 WREEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQDEQLQKTKANNRVADEAFYK 170
WR Q E++ + RKQE + W+ E+ I+E EE Q+E++ + + R +E + +
Sbjct: 492 WR--QKEKMHEQEEKIRKQEEKVWRQEEKIREQEEKIREQEEKMWRQEEKIREQEEMWRE 549
Query: 171 Q 171
+
Sbjct: 550 E 550
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 34.7 bits (78), Expect = 0.073
Identities = 26/139 (18%), Positives = 63/139 (45%), Gaps = 16/139 (11%)
Query: 99 QVDRLQSEPESIRK-----WREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQ 153
Q +++ + E IR+ WR+E+ R + ++++ +E+ ++E EE Q+E+
Sbjct: 500 QEEKMHDQEEKIREQEEKMWRQEEKIREQEEKIREQEEKIREQEEMMQEQEEKMGEQEEK 559
Query: 154 LQKTKANNRVADE--------AFYKQPFADVIGYVAAEEAFVNDIDESSPGTE---WERV 202
+Q+ + R ++ K+ + + +E + + +E E WE+
Sbjct: 560 MQEQEKMRRQEEKIREQEEKIREQKEKIREQEEKIWEQEEKIREQEEMMQEQEEKMWEQE 619
Query: 203 ARLCDFNPKSSKQAKDVSR 221
++C+ K +Q + + R
Sbjct: 620 EKMCEQEEKMQEQEEKMRR 638
Score = 30.0 bits (66), Expect = 1.8
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 99 QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTK 158
Q +++ + E I++W E+ E+ E + R+QE + I+E EE RQ+E + + +
Sbjct: 298 QEEKMWRQEEKIQEWEEKIQEQEEKI----REQEEK-----IREQEEKMRRQEEMMWEKE 348
Query: 159 ANNRVADEAFYKQ 171
R +E +++
Sbjct: 349 EKMRRQEEMMWEK 361
Score = 29.3 bits (64), Expect = 3.1
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 106 EPESIRK-----WREEQMERLEALDANSRKQEAE-WK-EKAIKELEEWYARQDEQLQKTK 158
E E IRK WR+E E++ + R+QE + W+ E+ I+E EE Q+E++++ +
Sbjct: 486 EQEKIRKQEEKVWRQE--EKMHDQEEKIREQEEKMWRQEEKIREQEEKIREQEEKIREQE 543
Query: 159 ANNRVADEAFYKQ 171
+ +E +Q
Sbjct: 544 EMMQEQEEKMGEQ 556
Score = 28.9 bits (63), Expect = 4.0
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 106 EPESIRKWREEQ-MERLEALDANSRKQEAEWKEK-------AIKELEEWYARQDEQLQKT 157
E E IR+ + Q E + + R+QE W++K I++ EE RQ+E++
Sbjct: 448 EQEKIREEEKRQEQEEMWRQEEKIREQEEIWRQKEKMHEQEKIRKQEEKVWRQEEKMHDQ 507
Query: 158 KANNRVADEAFYKQ 171
+ R +E ++Q
Sbjct: 508 EEKIREQEEKMWRQ 521
Score = 28.5 bits (62), Expect = 5.3
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 101 DRLQSEPESIRKWRE--EQMERLEALDANSRKQEAEWK--------EKAIKELEEWYARQ 150
+ + + E IR+ E Q E++ + +++E W+ E+ I+E EE RQ
Sbjct: 462 EEMWRQEEKIREQEEIWRQKEKMHEQEKIRKQEEKVWRQEEKMHDQEEKIREQEEKMWRQ 521
Query: 151 DEQLQKTKANNRVADEAFYKQ 171
+E++++ + R +E +Q
Sbjct: 522 EEKIREQEEKIREQEEKIREQ 542
>gi|130980075 centromere protein J [Homo sapiens]
Length = 1338
Score = 34.7 bits (78), Expect = 0.073
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 17/128 (13%)
Query: 98 SQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKT 157
+++++ ++E S+ K R E+ LE L RK+ A+++++ KEL + E+++K
Sbjct: 915 TEIEKFKAENASLAKLRIERESALEKL----RKEIADFEQQKAKELARIEEFKKEEMRKL 970
Query: 158 KANNRVADEAFYKQPFADVIGYVAAEEAFVNDIDESSPGTEWERVARLC-DFNPKSSKQA 216
+ +V ++ Y A F + + T +++A L D K +K +
Sbjct: 971 QKERKVFEK------------YTTAARTFPDKKEREEIQTLKQQIADLREDLKRKETKWS 1018
Query: 217 KDVSRMRS 224
SR+RS
Sbjct: 1019 STHSRLRS 1026
>gi|33457350 OTU domain containing 5 isoform a [Homo sapiens]
Length = 571
Score = 34.7 bits (78), Expect = 0.073
Identities = 43/174 (24%), Positives = 64/174 (36%), Gaps = 34/174 (19%)
Query: 6 PFGAPAGAPGGP--ALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQ 63
P G P G GGP ALG AG G AG+ A+ GG
Sbjct: 102 PCGGPGGPGGGPGDALGAAAAGVG---------------AAGVVVGVGGAVGVGGCCSGP 146
Query: 64 PHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEA 123
H + V V G +E G SE E E R+EA
Sbjct: 147 GHSKRRRQAPGVGAVGGGSPEREEVGA-----------GYNSEDE-----YEAAAARIEA 190
Query: 124 LDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVI 177
+D + +Q+ W EKA+++ + + +Q ++ VAD+ + Q +V+
Sbjct: 191 MDPATVEQQEHWFEKALRDKKGFIIKQMKE-DGACLFRAVADQVYGDQDMHEVV 243
>gi|209977021 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 34.7 bits (78), Expect = 0.073
Identities = 43/174 (24%), Positives = 64/174 (36%), Gaps = 34/174 (19%)
Query: 6 PFGAPAGAPGGP--ALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQ 63
P G P G GGP ALG AG G AG+ A+ GG
Sbjct: 102 PCGGPGGPGGGPGDALGAAAAGVG---------------AAGVVVGVGGAVGVGGCCSGP 146
Query: 64 PHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEA 123
H + V V G +E G SE E E R+EA
Sbjct: 147 GHSKRRRQAPGVGAVGGGSPEREEVGA-----------GYNSEDE-----YEAAAARIEA 190
Query: 124 LDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVI 177
+D + +Q+ W EKA+++ + + +Q ++ VAD+ + Q +V+
Sbjct: 191 MDPATVEQQEHWFEKALRDKKGFIIKQMKE-DGACLFRAVADQVYGDQDMHEVV 243
>gi|169218106 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 436
Score = 34.3 bits (77), Expect = 0.096
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 99 QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQK 156
Q ++++ + E +RK +EEQM + E ++Q E KE+ ++E EE Q EQ++K
Sbjct: 371 QEEQMRKQEEQMRK-QEEQMRKQEEQMGEQKEQMGEQKEQ-MREQEEQMGEQKEQMRK 426
Score = 33.1 bits (74), Expect = 0.21
Identities = 17/77 (22%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 99 QVDRLQSEPESIRK----WREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQL 154
Q ++++ + E +R+ RE++ + L+ + ++++ +E+ ++E EE Q+EQ+
Sbjct: 253 QEEQMRKQEEQMREQEEQMREQEEQMLKQKEQTEQEEQTGEQEEQMREQEEQMREQEEQM 312
Query: 155 QKTKANNRVADEAFYKQ 171
++ + R +E KQ
Sbjct: 313 REQEEQMREQEEQMGKQ 329
Score = 32.3 bits (72), Expect = 0.36
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 99 QVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWY------ARQDE 152
Q ++++ + E +R+ +EEQM E +Q E KE+ ++ E+ + Q+E
Sbjct: 301 QEEQMREQEEQMRE-QEEQMREQEEQMGKQEEQMWEQKEQMWEQKEQMWKQEEQMGEQEE 359
Query: 153 QLQKTKANNRVADEAFYKQ 171
Q+QK + R +E KQ
Sbjct: 360 QMQKQEEQVRKQEEQMRKQ 378
Score = 32.0 bits (71), Expect = 0.48
Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 81 GEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAI 140
G+ ++ + + + + E E +EEQM++ E ++++ +E+ +
Sbjct: 178 GQVREQEGQVREQEGQMGEQEGQMGEQEEQMGEQEEQMQKQEE-QMGEQEEQMRKQEEQM 236
Query: 141 KELEEWYARQDEQLQKTKANNRVADEAFYKQ 171
E EE +Q+EQ+QK + R +E +Q
Sbjct: 237 GEQEEQVQKQEEQVQKQEEQMRKQEEQMREQ 267
Score = 31.6 bits (70), Expect = 0.62
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 99 QVDRLQSEPESIRKWRE---------EQMERLEALDANSRKQEAEWKEKA--IKELEEWY 147
Q ++++ + E + K +E EQ E++ + R+QE + +E+ ++E EE
Sbjct: 267 QEEQMREQEEQMLKQKEQTEQEEQTGEQEEQMREQEEQMREQEEQMREQEEQMREQEEQM 326
Query: 148 ARQDEQLQKTKANNRVADEAFYKQ 171
+Q+EQ+ + K E +KQ
Sbjct: 327 GKQEEQMWEQKEQMWEQKEQMWKQ 350
Score = 29.6 bits (65), Expect = 2.4
Identities = 15/78 (19%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 99 QVDRLQSEPESIRKWREEQMERLEAL-----DANSRKQEAEWKEKAIKELEEWYARQDEQ 153
Q +++ + E + + +E+ E+ E + ++++ + +E+ +++ EE +Q+EQ
Sbjct: 322 QEEQMGKQEEQMWEQKEQMWEQKEQMWKQEEQMGEQEEQMQKQEEQVRKQEEQMRKQEEQ 381
Query: 154 LQKTKANNRVADEAFYKQ 171
++K + R +E +Q
Sbjct: 382 MRKQEEQMRKQEEQMGEQ 399
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,030,657
Number of Sequences: 37866
Number of extensions: 599923
Number of successful extensions: 4292
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 253
Number of HSP's that attempted gapping in prelim test: 3615
Number of HSP's gapped (non-prelim): 822
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.