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Search of human proteins with 115511030
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|115511030 hypothetical protein LOC115004 [Homo sapiens]
(522 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|115511030 hypothetical protein LOC115004 [Homo sapiens] 1059 0.0
gi|5453730 mab-21-like protein 2 [Homo sapiens] 77 3e-14
gi|5031897 mab-21-like protein 1 [Homo sapiens] 77 5e-14
gi|22748791 hypothetical protein LOC126868 [Homo sapiens] 67 3e-11
gi|197333817 hypothetical protein LOC151963 [Homo sapiens] 47 4e-05
gi|29789287 inositol 1,4,5-triphosphate receptor interacting pro... 47 6e-05
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 46 7e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 45 1e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 45 2e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 45 2e-04
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 45 2e-04
gi|30795231 brain abundant, membrane attached signal protein 1 [... 45 2e-04
gi|40353727 synaptopodin isoform A [Homo sapiens] 45 2e-04
gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax ... 45 2e-04
gi|4885379 histone cluster 1, H1e [Homo sapiens] 44 5e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 43 6e-04
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 43 6e-04
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 43 6e-04
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 43 6e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 43 6e-04
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|122937321 UNC homeobox [Homo sapiens] 42 0.001
gi|18079216 CASK interacting protein 1 [Homo sapiens] 42 0.001
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 42 0.001
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 42 0.002
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 42 0.002
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 42 0.002
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 42 0.002
gi|32469511 B-cell CLL/lymphoma 6, member B (zinc finger protein... 42 0.002
>gi|115511030 hypothetical protein LOC115004 [Homo sapiens]
Length = 522
Score = 1059 bits (2739), Expect = 0.0
Identities = 522/522 (100%), Positives = 522/522 (100%)
Query: 1 MQPWHGKAMQRASEAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSR 60
MQPWHGKAMQRASEAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSR
Sbjct: 1 MQPWHGKAMQRASEAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSR 60
Query: 61 QKKSAPDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGS 120
QKKSAPDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGS
Sbjct: 61 QKKSAPDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGS 120
Query: 121 CRQRGARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGASKLRAVLEKLKLSRDDIS 180
CRQRGARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGASKLRAVLEKLKLSRDDIS
Sbjct: 121 CRQRGARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGASKLRAVLEKLKLSRDDIS 180
Query: 181 TAAGMVKGVVDHLLLRLKCDSAFRGVGLLNTGSYYEHVKISAPNEFDVMFKLEVPRIQLE 240
TAAGMVKGVVDHLLLRLKCDSAFRGVGLLNTGSYYEHVKISAPNEFDVMFKLEVPRIQLE
Sbjct: 181 TAAGMVKGVVDHLLLRLKCDSAFRGVGLLNTGSYYEHVKISAPNEFDVMFKLEVPRIQLE 240
Query: 241 EYSNTRAYYFVKFKRNPKENPLSQFLEGEILSASKMLSKFRKIIKEEINDIKDTDVIMKR 300
EYSNTRAYYFVKFKRNPKENPLSQFLEGEILSASKMLSKFRKIIKEEINDIKDTDVIMKR
Sbjct: 241 EYSNTRAYYFVKFKRNPKENPLSQFLEGEILSASKMLSKFRKIIKEEINDIKDTDVIMKR 300
Query: 301 KRGGSPAVTLLISEKISVDITLALESKSSWPASTQEGLRIQNWLSAKVRKQLRLKPFYLV 360
KRGGSPAVTLLISEKISVDITLALESKSSWPASTQEGLRIQNWLSAKVRKQLRLKPFYLV
Sbjct: 301 KRGGSPAVTLLISEKISVDITLALESKSSWPASTQEGLRIQNWLSAKVRKQLRLKPFYLV 360
Query: 361 PKHAKEGNGFQEETWRLSFSHIEKEILNNHGKSKTCCENKEEKCCRKDCLKLMKYLLEQL 420
PKHAKEGNGFQEETWRLSFSHIEKEILNNHGKSKTCCENKEEKCCRKDCLKLMKYLLEQL
Sbjct: 361 PKHAKEGNGFQEETWRLSFSHIEKEILNNHGKSKTCCENKEEKCCRKDCLKLMKYLLEQL 420
Query: 421 KERFKDKKHLDKFSSYHVKTAFFHVCTQNPQDSQWDRKDLGLCFDNCVTYFLQCLRTEKL 480
KERFKDKKHLDKFSSYHVKTAFFHVCTQNPQDSQWDRKDLGLCFDNCVTYFLQCLRTEKL
Sbjct: 421 KERFKDKKHLDKFSSYHVKTAFFHVCTQNPQDSQWDRKDLGLCFDNCVTYFLQCLRTEKL 480
Query: 481 ENYFIPEFNLFSSNLIDKRSKEFLTKQIEYERNNEFPVFDEF 522
ENYFIPEFNLFSSNLIDKRSKEFLTKQIEYERNNEFPVFDEF
Sbjct: 481 ENYFIPEFNLFSSNLIDKRSKEFLTKQIEYERNNEFPVFDEF 522
>gi|5453730 mab-21-like protein 2 [Homo sapiens]
Length = 359
Score = 77.4 bits (189), Expect = 3e-14
Identities = 67/291 (23%), Positives = 125/291 (42%), Gaps = 40/291 (13%)
Query: 215 YEHVKISAPNEFDVMFKL-EVPRIQLEEYSNTRAYYFVKFKRNPKENPLSQFLE----GE 269
YE +++ +P EF+V+ L ++ + + +K K + +S ++E
Sbjct: 63 YEGLEVISPTEFEVVLYLNQMGVFNFVDDGSLPGCAVLKLSDGRKRS-MSLWVEFITASG 121
Query: 270 ILSASKMLSKFRKIIKEEINDIKDTDVIMKRKRGGSPAVTLLISEKISVDITLALESKSS 329
LSA K+ S+F+ ++ + ++ DV+ + + V L I E+ V IT A +
Sbjct: 122 YLSARKIRSRFQTLVAQAVDKCSYRDVV--KMIADTSEVKLRIRERYVVQITPAFKCTGI 179
Query: 330 WPAST-QEGLRIQNWLSAKVRKQLRLKPFYLVPKHAKEGNGFQE----ETWRLSFSHIEK 384
WP S Q + W +++ + F L+ K G Q + W L F E
Sbjct: 180 WPRSAAQWPMPHIPWPGPNRVAEVKAEGFNLLSKECYSLTGKQSSAESDAWVLQFGEAEN 239
Query: 385 EILNNHGKSKTCCENKEEKCCRKDCLKLMKYLLEQLKERFKDKKHLD----KFSSYHVKT 440
+L CR CL ++K L + +HL+ ++YH+KT
Sbjct: 240 RLLMGG--------------CRNKCLSVLKTLRD---------RHLELPGQPLNNYHMKT 276
Query: 441 AFFHVCTQNPQDSQWDRKDLGLCFDNCVTYFLQCLRTEKLENYFIPEFNLF 491
+ C ++P+++ WD LG + + + CL+ + +YF+P +LF
Sbjct: 277 LLLYECEKHPRETDWDESCLGDRLNGILLQLISCLQCRRCPHYFLPNLDLF 327
>gi|5031897 mab-21-like protein 1 [Homo sapiens]
Length = 359
Score = 76.6 bits (187), Expect = 5e-14
Identities = 66/291 (22%), Positives = 128/291 (43%), Gaps = 40/291 (13%)
Query: 215 YEHVKISAPNEFDVMFKL-EVPRIQLEEYSNTRAYYFVKFKRNPKENPLSQFLE----GE 269
YE +++ +P EF+V+ L ++ + + +K K + +S ++E
Sbjct: 63 YEGLEVISPTEFEVVLYLNQMGVFNFVDDGSLPGCAVLKLSDGRKRS-MSLWVEFITASG 121
Query: 270 ILSASKMLSKFRKIIKEEINDIKDTDVIMKRKRGGSPAVTLLISEKISVDITLALESKSS 329
LSA K+ S+F+ ++ + ++ DV+ + + V L I ++ V IT A +
Sbjct: 122 YLSARKIRSRFQTLVAQAVDKCSYRDVV--KMVADTSEVKLRIRDRYVVQITPAFKCTGI 179
Query: 330 WPASTQEG-LRIQNWLSAKVRKQLRLKPFYLVPKH----AKEGNGFQEETWRLSFSHIEK 384
WP S L W +++ + F L+ K A + + + + W L F+ E
Sbjct: 180 WPRSAAHWPLPHIPWPGPNRVAEVKAEGFNLLSKECHSLAGKQSSAESDAWVLQFAEAEN 239
Query: 385 EILNNHGKSKTCCENKEEKCCRKDCLKLMKYLLEQLKERFKDKKHLD----KFSSYHVKT 440
+ + CRK CL ++K L + +HL+ ++YH+KT
Sbjct: 240 RL--------------QMGGCRKKCLSILKTLRD---------RHLELPGQPLNNYHMKT 276
Query: 441 AFFHVCTQNPQDSQWDRKDLGLCFDNCVTYFLQCLRTEKLENYFIPEFNLF 491
+ C ++P++S WD LG + + + CL+ + +YF+P +LF
Sbjct: 277 LVSYECEKHPRESDWDESCLGDRLNGILLQLISCLQCRRCPHYFLPNLDLF 327
>gi|22748791 hypothetical protein LOC126868 [Homo sapiens]
Length = 362
Score = 67.4 bits (163), Expect = 3e-11
Identities = 85/355 (23%), Positives = 147/355 (41%), Gaps = 63/355 (17%)
Query: 168 VLEKLKLSRDDISTAAGMVKGVVDHLLLRLKC-DSAFRGVGLLNTGSYYEHVKISAPNEF 226
+L K+ L R IS A V+ VV HL + D F+ V +T Y E++K+ AP++F
Sbjct: 13 LLNKVDLRRQQISQAVEEVQKVVHHLTTNISNQDIRFQAVPYSDT--YNENIKVLAPSQF 70
Query: 227 DVMFKLEVPRIQLEEYSNTRA----YYFVKFKRNP----KENPLSQFLE----------- 267
V VP L Y R YY ++ R P L Q+LE
Sbjct: 71 LVT----VPIKGLAGYREAREQHWRYYTLQGTRLPCPLRDPEGLQQWLEVEQFMKSLWQW 126
Query: 268 --------GEILSASKMLSKFRKIIKEEINDIKDTDVIMKRKRGGSPAVTLLISE---KI 316
G+I+ A K+L FRK+++ + + + G AV + + ++
Sbjct: 127 HETDVNIDGDIVPA-KVLLVFRKLVENAVRTCHLSGKVSLL--GNRSAVWVAVETSAYQV 183
Query: 317 SVDITLALESKSSWPASTQEGLRIQNWLSAKVRKQLRLKPFYLVPKHAKEGNGFQEETWR 376
+++ A+E ++W + +Q W S + + ++ F L+ W+
Sbjct: 184 ELELVPAVEIPTTWSKKARWPRCLQRWPSQERVECIKSFGFNLL--------ACSNYHWQ 235
Query: 377 LSFSHIEKEILNNHGKSKTCCENKEEKCCRKDCLKLMKYLLEQLKERFKDKKHLDKFSSY 436
LSF E+ +L + E+ CR+ C ++M++L KE + +S+
Sbjct: 236 LSFLRAEQVLLE---------QLDEDGGCRRKCFQVMRHL----KEDIWCPGNRPVITSH 282
Query: 437 HVKTAFFHVCTQNPQDSQWDRKDLGLCFDNCVTYFLQCLRTEKLENYFIPEFNLF 491
H++T F C + P W + F V +C+ L++YF+ NLF
Sbjct: 283 HLQTVLFWTCEKYPHFKDW--QVFSKAFLRLVRKLHKCVSQHFLKHYFVRNSNLF 335
>gi|197333817 hypothetical protein LOC151963 [Homo sapiens]
Length = 491
Score = 47.0 bits (110), Expect = 4e-05
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 42/211 (19%)
Query: 297 IMKRKRGGSPAVTLLISEKISVDITLALESK------------SSWPASTQEGLRIQNWL 344
I K+ + G P V + + I L + S WPA Q L ++
Sbjct: 199 IQKKPQRGMPKVEKVEKNGTIISIILGVGSSRMLYDIVPVVSFKGWPAVAQSWLMENHFW 258
Query: 345 SAKVRKQLRLKPFYLVPKHAKEGNGFQEETWRLSFSHIEKEILNNHGKSKTCCENKEEKC 404
K+ ++ + FYLVP + +G ++ WRLSF+ E ++ K C + +
Sbjct: 259 DGKITEEEVISGFYLVPACSYKGK--KDNEWRLSFARSEVQL-------KKCISSSLMQA 309
Query: 405 CRKDCLKLMKYLLEQLKERFKDKKHLDKFSSYHVKTAFFHVCTQNP-----QDSQWDRKD 459
+ C ++ LL + K S YH+++ C + P Q+
Sbjct: 310 YQA-CKAIIIKLLSRPK----------AISPYHLRSMMLWACDRLPANYLAQEDYAAHFL 358
Query: 460 LGLCFDNCVTYFLQCLRTEKLENYFIPEFNL 490
LGL D CL + NYFIP+ N+
Sbjct: 359 LGLIDD-----LQHCLVNKMCPNYFIPQCNM 384
>gi|29789287 inositol 1,4,5-triphosphate receptor interacting
protein [Homo sapiens]
Length = 547
Score = 46.6 bits (109), Expect = 6e-05
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 360 VPKHAKEGNGFQEETWRLSFSHIEKEILNNHGKSKTCCENKEEKCCRKDCLKLMKYLLEQ 419
+P+ EG W LSF+ E+ L +T + E C CL++ +LL +
Sbjct: 365 LPREPSEGTPASSTDWLLSFAVYERHFL------RTTLKALPEGACHLSCLQIASFLLSK 418
Query: 420 LKERFKDKKHLDKFSSYHVKTAFFHVCTQNPQDSQWDRKDLGLCFDNCVTYFLQCLRTEK 479
+ R L SSYH+KTA H+ Q + W L + + + L +K
Sbjct: 419 -QSRLTGPSGL---SSYHLKTALLHLLLLR-QAADWKAGQLDARLHELLCFLEKSLLQKK 473
Query: 480 LENYFI 485
L ++FI
Sbjct: 474 LHHFFI 479
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 46.2 bits (108), Expect = 7e-05
Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 3 PWHGKAMQRASEAGATAPKASARNAR-GAPMDPTESPAAPEAAL----PKAGKFGPARKS 57
P G G + ++ A R G+ P + P++P + A PAR
Sbjct: 302 PSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGK 361
Query: 58 GSRQKKSAPDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSR 117
S +SAP +Q R RA G ++ +R + + + SAP G P P S
Sbjct: 362 ESPSPRSAPSSQGRGG-RAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSS 420
Query: 118 AGSCRQRGARCSTKPRPPPGPWDVPSPG 145
R R + S R PGP P PG
Sbjct: 421 RSLSRARSSSDSGSGRGAPGPG--PEPG 446
Score = 37.4 bits (85), Expect = 0.034
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 17/148 (11%)
Query: 10 QRASEAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQ 69
+R S + A+AP+ R R P PA P + + + SGS + P
Sbjct: 393 RRRSRSSASAPR---RRGRRRPR-----PAPPRGSSRSLSRARSSSDSGSGRGAPGPGP- 443
Query: 70 ERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLE-----PPAAREPA---LSRAGSC 121
E R G K+A +R +P+ + +PGA G ++R P S + S
Sbjct: 444 EPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSR 503
Query: 122 RQRGARCSTKPRPPPGPWDVPSPGLPVS 149
+R + + P P PSP P+S
Sbjct: 504 SPSKSRSRSAEKRPHSPSRSPSPKKPLS 531
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 45.4 bits (106), Expect = 1e-04
Identities = 50/161 (31%), Positives = 64/161 (39%), Gaps = 22/161 (13%)
Query: 11 RASEAGATAPKASARNARGAPMDPTESPA--APEAALPKAGKFGPARKSGSRQKKSAPDT 68
RA+ AGA + + GA +PA AP AA P+ G AR G ++ P +
Sbjct: 51 RAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAA-PEPPPAGRARPGGGGPQRPGPPS 109
Query: 69 QERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRG--- 125
RP V A A A + + S + AP A EPA AG + G
Sbjct: 110 PRRPLVPA--GPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPA--PAGPAKPAGPAA 165
Query: 126 --ARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGASK 164
AR P P PGP P PG P A PGA++
Sbjct: 166 LAARAGPGPGPGPGPGPGPGPGKP----------AGPGAAQ 196
Score = 42.7 bits (99), Expect = 8e-04
Identities = 55/184 (29%), Positives = 62/184 (33%), Gaps = 43/184 (23%)
Query: 6 GKAMQRASEAGATAPKASARNARGAPMDP-TESPAAPEAALPKAGKFGPARKSGSRQKKS 64
G +Q GA AP A A AP P +PAAP AA P
Sbjct: 235 GTVIQTPPFVGAAAPPAPA-----APSPPAAPAPAAPAAAPP--------------PPPP 275
Query: 65 APDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQR 124
AP T RPP G P A P A + G PA A AG Q
Sbjct: 276 APATLARPPGHPAG------PPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQP 329
Query: 125 GARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGASKLRAVLEKLKLSRDDISTAAG 184
G P P+PG+ +P V + A P A L A STAA
Sbjct: 330 G---------PGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAA--------SGPASTAAS 372
Query: 185 MVKG 188
MV G
Sbjct: 373 MVIG 376
Score = 35.0 bits (79), Expect = 0.17
Identities = 43/169 (25%), Positives = 61/169 (36%), Gaps = 27/169 (15%)
Query: 15 AGATAPKASARNARGAPMDPTESPAAPEAA----LPKAGKFGPARKSGSRQKKSAPDTQE 70
A A P A+A+N A P +PAA A P G A G + + Q
Sbjct: 294 APAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQA 353
Query: 71 RPPVRATGARAKKAPQRAQDT-QPSDATSAPGAEGLEPPAAREP-------------ALS 116
PP T A + A A P+ + P + PPA P +LS
Sbjct: 354 APPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLS 413
Query: 117 RAGSCRQRGARCSTK--------PRPPPGPWDVPSPGLPVSAPILVRRD 157
R + G R + P+PP P ++ + LP +LVR +
Sbjct: 414 RTPTATTSGIRATLTPTVLAPRLPQPPQNPTNIQNFQLP-PGMVLVRSE 461
Score = 29.3 bits (64), Expect = 9.2
Identities = 45/139 (32%), Positives = 51/139 (36%), Gaps = 32/139 (23%)
Query: 57 SGSRQKKSAPDTQERPPVRATGARA------KKAPQRAQDTQPS-DATSAPGAEGLEPPA 109
S + AP T P VRA A A +P A P+ A APGA PPA
Sbjct: 36 SAAHHHHLAPRT---PEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPA 92
Query: 110 AREPALSRAGSCRQRGARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGASKLRAVL 169
R G QR PGP PSP P LV AP A+KLR
Sbjct: 93 GRARP---GGGGPQR-----------PGP---PSPRRP-----LVPAGPAPPAAKLRPPP 130
Query: 170 EKLKLSRDDISTAAGMVKG 188
E S + AA + G
Sbjct: 131 EGSAGSCAPVPAAAAVAAG 149
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 45.1 bits (105), Expect = 2e-04
Identities = 44/131 (33%), Positives = 52/131 (39%), Gaps = 13/131 (9%)
Query: 14 EAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERPP 73
E G T P A A ARG P PA P + AG GP K A T R P
Sbjct: 331 ERGRTGP-AGAAGARGNDGQP--GPAGPPGPVGPAG--GPGFPGAPGAKGEAGPTGARGP 385
Query: 74 VRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTKPR 133
A G R + P P+ A+ PG +G+ P A+ AG+ GA PR
Sbjct: 386 EGAQGPRGE--PGTPGSPGPAGASGNPGTDGI--PGAK----GSAGAPGIAGAPGFPGPR 437
Query: 134 PPPGPWDVPSP 144
PPGP P
Sbjct: 438 GPPGPQGATGP 448
Score = 38.1 bits (87), Expect = 0.020
Identities = 53/170 (31%), Positives = 65/170 (38%), Gaps = 29/170 (17%)
Query: 16 GATAPKASARNARGAPMDPTESPAA-----PEAALPKAGKFGPARKSGSRQKKSAPDTQE 70
G T PK AR A+G P T P A P + G GP SG K A
Sbjct: 879 GVTGPKG-ARGAQGPP-GATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARG-DS 935
Query: 71 RPPVRA--TGARAKKAPQRAQ----DTQPSDATSAPGAEGLEP-------PAARE----P 113
PP RA G + P + D PS A PG +GL P R P
Sbjct: 936 GPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFP 995
Query: 114 AL-SRAGSCRQRGARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGA 162
L +G ++GA ++ R PPGP P P P R+ +PGA
Sbjct: 996 GLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEP---GREGSPGA 1042
Score = 34.7 bits (78), Expect = 0.22
Identities = 38/141 (26%), Positives = 49/141 (34%), Gaps = 12/141 (8%)
Query: 14 EAGATAPKASA--RNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQER 71
EAGA P + ARG + P P +AG+ G G R
Sbjct: 1090 EAGAQGPMGPSGPAGARGI-----QGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGP 1144
Query: 72 P-PVRATGARAKKAPQRAQDTQ-PSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCS 129
P P GA P + P + GA G+ P R+G G +
Sbjct: 1145 PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGN 1204
Query: 130 TKPRPPPGPWDVPSPGLPVSA 150
P PPGP P PG+ +SA
Sbjct: 1205 PGPPGPPGP---PGPGIDMSA 1222
Score = 34.3 bits (77), Expect = 0.28
Identities = 37/141 (26%), Positives = 50/141 (35%), Gaps = 22/141 (15%)
Query: 12 ASEAGATAPKASARNARGAPMDPTE--SPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQ 69
A+ +G PK +G P D + P P AG+ GP G + +K AP +
Sbjct: 94 ATASGQPGPKGQ----KGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPR 149
Query: 70 ERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPA---LSRAGSCR---Q 123
R P + P PG GL A + A +AG +
Sbjct: 150 GR----------DGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVM 199
Query: 124 RGARCSTKPRPPPGPWDVPSP 144
+G PR PPGP P P
Sbjct: 200 QGPMGPMGPRGPPGPAGAPGP 220
Score = 33.5 bits (75), Expect = 0.49
Identities = 35/154 (22%), Positives = 49/154 (31%), Gaps = 29/154 (18%)
Query: 14 EAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDT--QER 71
+ G P+ + G + P P A + G+ GP +GS + AP +
Sbjct: 769 DVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETG 828
Query: 72 PPVRA--------------------------TGARAKKAPQRAQDTQ-PSDATSAPGAEG 104
PP A GA + P A Q P+ T GA G
Sbjct: 829 PPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARG 888
Query: 105 LEPPAAREPALSRAGSCRQRGARCSTKPRPPPGP 138
+ P AG G+ + P PPGP
Sbjct: 889 AQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGP 922
Score = 31.6 bits (70), Expect = 1.8
Identities = 44/155 (28%), Positives = 49/155 (31%), Gaps = 18/155 (11%)
Query: 3 PWHGKAMQRASEAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKS--GSR 60
P G A A A AR GA P P P + P P G++
Sbjct: 361 PAGGPGFPGAPGAKGEAGPTGARGPEGA-QGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 419
Query: 61 QKKSAPDTQERPPVRATGARAKKAPQRAQDTQ-PSDATSAPGAEGL--------EP-PAA 110
AP P G R PQ A P T PG G EP PA
Sbjct: 420 GSAGAPGIAGAPGF--PGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAG 477
Query: 111 REPALSRAGSCRQRGAR---CSTKPRPPPGPWDVP 142
+ A AG +RGAR P PPG P
Sbjct: 478 PQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAP 512
Score = 31.6 bits (70), Expect = 1.8
Identities = 32/118 (27%), Positives = 43/118 (36%), Gaps = 13/118 (11%)
Query: 49 GKFGPARKSGSRQKKSAPDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPP 108
G GP +G+ +K + PP A A A+ AP +T P PG G P
Sbjct: 789 GPIGPPGPAGANGEKG----EVGPPGPAGSAGARGAPGERGETGP------PGPAGFAGP 838
Query: 109 AAREPALSRAGSCRQRGARCSTKPRPPPGPWDVPSPGLP--VSAPILVR-RDAAPGAS 163
+ G + G + P GP P P P V+ P R PGA+
Sbjct: 839 PGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT 896
Score = 31.2 bits (69), Expect = 2.4
Identities = 40/152 (26%), Positives = 50/152 (32%), Gaps = 13/152 (8%)
Query: 14 EAGATAPKASARNARGAPMDPTESPAAPEAALP-KAGKFGPARKSGSRQKKSAPDTQERP 72
E G + P RG P P + EA P KAG+ GP G+R P T P
Sbjct: 232 EPGVSGPMGP----RGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGAR---GFPGTPGLP 284
Query: 73 PVRATGARAKKAPQRAQDTQPS--DATSAPGAEGLEPPAAREPALSRAGSCRQRGARCST 130
V+ + + P + +PG G P G GA +
Sbjct: 285 GVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGAR 344
Query: 131 KPRPPPGPWDVPSPGLPVSAPILVRRDAAPGA 162
PGP P P P P APGA
Sbjct: 345 GNDGQPGPAGPPGPVGPAGGPGF---PGAPGA 373
Score = 30.0 bits (66), Expect = 5.4
Identities = 33/111 (29%), Positives = 40/111 (36%), Gaps = 15/111 (13%)
Query: 28 RGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERPPVRATGARAKKAPQR 87
+GAP P + G GPA + G A + PP R A K
Sbjct: 1007 QGAP--GASGDRGPPGPVGPPGLTGPAGEPGREGSPGA----DGPPGRDGAAGVKG---- 1056
Query: 88 AQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTKPRPPPGP 138
D + A APGA G PP + PA G RG + P P GP
Sbjct: 1057 --DRGETGAVGAPGAPG--PPGSPGPA-GPTGKQGDRGEAGAQGPMGPSGP 1102
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 45.1 bits (105), Expect = 2e-04
Identities = 44/131 (33%), Positives = 52/131 (39%), Gaps = 13/131 (9%)
Query: 14 EAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERPP 73
E G T P A A ARG P PA P + AG GP K A T R P
Sbjct: 262 ERGRTGP-AGAAGARGNDGQP--GPAGPPGPVGPAG--GPGFPGAPGAKGEAGPTGARGP 316
Query: 74 VRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTKPR 133
A G R + P P+ A+ PG +G+ P A+ AG+ GA PR
Sbjct: 317 EGAQGPRGE--PGTPGSPGPAGASGNPGTDGI--PGAK----GSAGAPGIAGAPGFPGPR 368
Query: 134 PPPGPWDVPSP 144
PPGP P
Sbjct: 369 GPPGPQGATGP 379
Score = 38.1 bits (87), Expect = 0.020
Identities = 53/170 (31%), Positives = 65/170 (38%), Gaps = 29/170 (17%)
Query: 16 GATAPKASARNARGAPMDPTESPAA-----PEAALPKAGKFGPARKSGSRQKKSAPDTQE 70
G T PK AR A+G P T P A P + G GP SG K A
Sbjct: 810 GVTGPKG-ARGAQGPP-GATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARG-DS 866
Query: 71 RPPVRA--TGARAKKAPQRAQ----DTQPSDATSAPGAEGLEP-------PAARE----P 113
PP RA G + P + D PS A PG +GL P R P
Sbjct: 867 GPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFP 926
Query: 114 AL-SRAGSCRQRGARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGA 162
L +G ++GA ++ R PPGP P P P R+ +PGA
Sbjct: 927 GLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEP---GREGSPGA 973
Score = 34.7 bits (78), Expect = 0.22
Identities = 38/141 (26%), Positives = 49/141 (34%), Gaps = 12/141 (8%)
Query: 14 EAGATAPKASA--RNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQER 71
EAGA P + ARG + P P +AG+ G G R
Sbjct: 1021 EAGAQGPMGPSGPAGARGI-----QGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGP 1075
Query: 72 P-PVRATGARAKKAPQRAQDTQ-PSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCS 129
P P GA P + P + GA G+ P R+G G +
Sbjct: 1076 PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGN 1135
Query: 130 TKPRPPPGPWDVPSPGLPVSA 150
P PPGP P PG+ +SA
Sbjct: 1136 PGPPGPPGP---PGPGIDMSA 1153
Score = 33.5 bits (75), Expect = 0.49
Identities = 35/154 (22%), Positives = 49/154 (31%), Gaps = 29/154 (18%)
Query: 14 EAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDT--QER 71
+ G P+ + G + P P A + G+ GP +GS + AP +
Sbjct: 700 DVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETG 759
Query: 72 PPVRA--------------------------TGARAKKAPQRAQDTQ-PSDATSAPGAEG 104
PP A GA + P A Q P+ T GA G
Sbjct: 760 PPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARG 819
Query: 105 LEPPAAREPALSRAGSCRQRGARCSTKPRPPPGP 138
+ P AG G+ + P PPGP
Sbjct: 820 AQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGP 853
Score = 32.7 bits (73), Expect = 0.83
Identities = 34/137 (24%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 16 GATAPKASARNARGAPMDPTE--SPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERPP 73
G + + +G P D + P P AG+ GP G + +K AP + R
Sbjct: 25 GQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGR-- 82
Query: 74 VRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPA---LSRAGSCR---QRGAR 127
P + P PG GL A + A +AG + +G
Sbjct: 83 --------DGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPM 134
Query: 128 CSTKPRPPPGPWDVPSP 144
PR PPGP P P
Sbjct: 135 GPMGPRGPPGPAGAPGP 151
Score = 31.6 bits (70), Expect = 1.8
Identities = 44/155 (28%), Positives = 49/155 (31%), Gaps = 18/155 (11%)
Query: 3 PWHGKAMQRASEAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKS--GSR 60
P G A A A AR GA P P P + P P G++
Sbjct: 292 PAGGPGFPGAPGAKGEAGPTGARGPEGA-QGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 350
Query: 61 QKKSAPDTQERPPVRATGARAKKAPQRAQDTQ-PSDATSAPGAEGL--------EP-PAA 110
AP P G R PQ A P T PG G EP PA
Sbjct: 351 GSAGAPGIAGAPGF--PGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAG 408
Query: 111 REPALSRAGSCRQRGAR---CSTKPRPPPGPWDVP 142
+ A AG +RGAR P PPG P
Sbjct: 409 PQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAP 443
Score = 31.6 bits (70), Expect = 1.8
Identities = 32/118 (27%), Positives = 43/118 (36%), Gaps = 13/118 (11%)
Query: 49 GKFGPARKSGSRQKKSAPDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPP 108
G GP +G+ +K + PP A A A+ AP +T P PG G P
Sbjct: 720 GPIGPPGPAGANGEKG----EVGPPGPAGSAGARGAPGERGETGP------PGPAGFAGP 769
Query: 109 AAREPALSRAGSCRQRGARCSTKPRPPPGPWDVPSPGLP--VSAPILVR-RDAAPGAS 163
+ G + G + P GP P P P V+ P R PGA+
Sbjct: 770 PGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT 827
Score = 31.2 bits (69), Expect = 2.4
Identities = 40/152 (26%), Positives = 50/152 (32%), Gaps = 13/152 (8%)
Query: 14 EAGATAPKASARNARGAPMDPTESPAAPEAALP-KAGKFGPARKSGSRQKKSAPDTQERP 72
E G + P RG P P + EA P KAG+ GP G+R P T P
Sbjct: 163 EPGVSGPMGP----RGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGAR---GFPGTPGLP 215
Query: 73 PVRATGARAKKAPQRAQDTQPS--DATSAPGAEGLEPPAAREPALSRAGSCRQRGARCST 130
V+ + + P + +PG G P G GA +
Sbjct: 216 GVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGAR 275
Query: 131 KPRPPPGPWDVPSPGLPVSAPILVRRDAAPGA 162
PGP P P P P APGA
Sbjct: 276 GNDGQPGPAGPPGPVGPAGGPGF---PGAPGA 304
Score = 30.0 bits (66), Expect = 5.4
Identities = 33/111 (29%), Positives = 40/111 (36%), Gaps = 15/111 (13%)
Query: 28 RGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERPPVRATGARAKKAPQR 87
+GAP P + G GPA + G A + PP R A K
Sbjct: 938 QGAP--GASGDRGPPGPVGPPGLTGPAGEPGREGSPGA----DGPPGRDGAAGVKG---- 987
Query: 88 AQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTKPRPPPGP 138
D + A APGA G PP + PA G RG + P P GP
Sbjct: 988 --DRGETGAVGAPGAPG--PPGSPGPA-GPTGKQGDRGEAGAQGPMGPSGP 1033
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 45.1 bits (105), Expect = 2e-04
Identities = 51/176 (28%), Positives = 62/176 (35%), Gaps = 36/176 (20%)
Query: 2 QPWHGKAMQRASEAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQ 61
QP + Q S+AG + P GAP P + P ALP+ G
Sbjct: 1358 QPSFLASQQLLSQAGPSNPP-------GAPPAPLAPSSPPVTALPQDG------------ 1398
Query: 62 KKSAPDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSC 121
+AP T P + A P Q TS P AE E P A +P + C
Sbjct: 1399 --AAPATSTMPEPASGTASQAGGPGTPQGLTSELETSQPLAETHEAPLAVQPLVVGLAPC 1456
Query: 122 -------RQRGARCSTKPRPPPGP-----WDVPSPGLPVSAPILVRRDAAPGASKL 165
R A +P PPP P P P L AP+L AA GA L
Sbjct: 1457 TPAPEAASTRDASAPREPLPPPAPEPSPHSGTPQPALGQPAPLL---PAAVGAVSL 1509
Score = 31.6 bits (70), Expect = 1.8
Identities = 39/186 (20%), Positives = 60/186 (32%), Gaps = 23/186 (12%)
Query: 25 RNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERPPVRATGARAKKA 84
R+ G M+P A P+A P + R+ D +E P + A A +
Sbjct: 8 RDVPGTLMEPGRGAGPAGMAEPRAKAARPGPQRFLRRSVVESDQEEPPGLEAAEAPGPQP 67
Query: 85 PQ----------------------RAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCR 122
PQ R P+ + PGA G A EP ++
Sbjct: 68 PQPLQRRVLLLCKTRRLIAERARGRPAAPAPAALVAQPGAPGAPADAGPEPVGTQEPGPD 127
Query: 123 QRGARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGASKLRAVLEKLKLSRDDISTA 182
A T P P GP + + + PG ++ R E+ + DD+
Sbjct: 128 PIAAAVETAPAPDGGPREEAAATVRKEDEGAAEAKPEPGRTR-RDEPEEEEDDEDDLKAV 186
Query: 183 AGMVKG 188
A + G
Sbjct: 187 ATSLDG 192
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 44.7 bits (104), Expect = 2e-04
Identities = 45/171 (26%), Positives = 68/171 (39%), Gaps = 28/171 (16%)
Query: 11 RASEAGATAPKASARNARGAPMDPTESPAAPE-------AALPKAGKFGPARKSGSRQKK 63
+ SE A A A A+ + P E A + AA +A K P + G+ + K
Sbjct: 38 KESEPQAAAEPAEAKEGKEKPDQDAEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAK 97
Query: 64 S----APDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAG 119
+ AP+ ++ P A G A KA ++A +AP AE P A EP+
Sbjct: 98 AEPPKAPEQEQAAPGPAAGGEAPKA---------AEAAAAP-AESAAPAAGEEPS----- 142
Query: 120 SCRQRGARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGASKLRAVLE 170
++ G T+ P + S G P S +AAP + + A E
Sbjct: 143 --KEEGEPKKTEAPAAPAAQETKSDGAPASDSKPGSSEAAPSSKETPAATE 191
Score = 44.7 bits (104), Expect = 2e-04
Identities = 46/156 (29%), Positives = 62/156 (39%), Gaps = 19/156 (12%)
Query: 2 QPWHGKAMQRASEAGATA-----PKASARNARGAPMDPTESPAAPE----AALPKAGKFG 52
Q GKA ++ E A A PKA GA E P APE A P AG
Sbjct: 60 QDAEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPEQEQAAPGPAAGGEA 119
Query: 53 P--ARKSGSRQKKSAPDTQERPPVRATGARAKKAP--QRAQDTQPSDA---TSAPGAEGL 105
P A + + + +AP E P + +AP AQ+T+ A S PG+
Sbjct: 120 PKAAEAAAAPAESAAPAAGEEPSKEEGEPKKTEAPAAPAAQETKSDGAPASDSKPGSSEA 179
Query: 106 EPPAAREPALSRAGSC---RQRGARCSTKPRPPPGP 138
P + PA + A S Q A + +P+P P
Sbjct: 180 APSSKETPAATEAPSSTPKAQGPAASAEEPKPVEAP 215
Score = 36.6 bits (83), Expect = 0.057
Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
Query: 3 PWHGKAMQRASEAGATAPKASARNARGAPMDP-------TESPAAPEAALPKAGKFGPAR 55
P G +A+EA A AP SA A G TE+PAAP A K+ PA
Sbjct: 113 PAAGGEAPKAAEAAA-APAESAAPAAGEEPSKEEGEPKKTEAPAAPAAQETKSDG-APAS 170
Query: 56 KSGSRQKKSAPDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAARE 112
S ++AP ++E P + KA A + AP A + +E
Sbjct: 171 DSKPGSSEAAPSSKETPAATEAPSSTPKAQGPAASAEEPKPVEAPAANSDQTVTVKE 227
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 44.7 bits (104), Expect = 2e-04
Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 20/151 (13%)
Query: 41 PEAALPKAGKFGPARKSGSRQKKSAPDTQERP---------PVRATGARAKKAPQ----- 86
P ALP+ + P + Q P P P RA RAK+AP+
Sbjct: 609 PSPALPRPSRSSPGLYTSPGQDSLQPTAVSPPYGGDISPVSPSRAWSPRAKQAPRPSFST 668
Query: 87 -----RAQDTQPSDATSAPGAEGLE-PPAAREPALSRAGSCRQRGARCSTKPRPPPGPWD 140
AQD + S TS P G PP++ + +S RG+ S+ P PP P
Sbjct: 669 RNAGIEAQDRRESLPTSPPWTPGASRPPSSLDGWVSPGPWEPGRGSSMSSPPPLPPPPPM 728
Query: 141 VPSPGLPVSAPILVRRDAAPGASKLRAVLEK 171
PS +P+ +A P + +L+A+L +
Sbjct: 729 SPSWSERSVSPLRPETEARPPSRQLQALLAR 759
Score = 42.0 bits (97), Expect = 0.001
Identities = 55/198 (27%), Positives = 68/198 (34%), Gaps = 56/198 (28%)
Query: 4 WHGKAMQRASEAGATAPKASARNARGAPMD-----PTESPAAPEAALPKA--------GK 50
W +A Q A P S RNA D PT P P A+ P + G
Sbjct: 654 WSPRAKQ------APRPSFSTRNAGIEAQDRRESLPTSPPWTPGASRPPSSLDGWVSPGP 707
Query: 51 FGPARKSG---------------SRQKKSA----PDTQERPPVRA----------TGARA 81
+ P R S S ++S P+T+ RPP R AR
Sbjct: 708 WEPGRGSSMSSPPPLPPPPPMSPSWSERSVSPLRPETEARPPSRQLQALLARNIINAARR 767
Query: 82 KKAPQRAQDTQ------PSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTKPRP- 134
K A R+ + P A P PP R P +R GS GA + PR
Sbjct: 768 KSASPRSAGAENPRPFSPPRAPPPPPPPPPPPPRMRSPQPARPGSAAVPGAAFAPIPRSP 827
Query: 135 -PPGPWDVPSPGLPVSAP 151
P GP SP P+ AP
Sbjct: 828 LPAGPSSCTSPRSPLPAP 845
>gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax
homolog 2 [Homo sapiens]
Length = 1210
Score = 44.7 bits (104), Expect = 2e-04
Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 13/172 (7%)
Query: 11 RASEAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGP-ARKSGSRQKKSAPDTQ 69
R++E P++ + + +ES P + KA + P A G R + +P Q
Sbjct: 533 RSTEPPRRHPESKGSSDSATSQEHSESKDPPPKSSSKAPRAPPEAPHPGKRSCQKSPAQQ 592
Query: 70 ERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRG---A 126
E P + G + K P +A + TS G REP L GS Q
Sbjct: 593 EPPQRQTVGTKQPKKPVKA-SARAGSRTSLQG--------EREPGLLPYGSRDQTSKDKP 643
Query: 127 RCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGASKLRAVLEKLKLSRDD 178
+ TK RP + P P +P S+ + + P SK + E K + +D
Sbjct: 644 KVKTKGRPRAAASNEPKPAVPPSSEKKKHKSSLPAPSKALSGPEPAKDNVED 695
>gi|4885379 histone cluster 1, H1e [Homo sapiens]
Length = 219
Score = 43.5 bits (101), Expect = 5e-04
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 6 GKAMQRASEAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSA 65
G+A +A +AGA A A+ GA P + A AA PK A+K+ + KK
Sbjct: 114 GEAKPKAKKAGA----AKAKKPAGAAKKPKK---ATGAATPKKS----AKKTPKKAKK-- 160
Query: 66 PDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRG 125
P A GA+ K+P++A+ +P A +P P A +P ++ + + +
Sbjct: 161 -------PAAAAGAKKAKSPKKAKAAKPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKK 213
Query: 126 ARCSTK 131
A K
Sbjct: 214 AAAKKK 219
Score = 29.3 bits (64), Expect = 9.2
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 3/119 (2%)
Query: 57 SGS-RQKKSAPDTQERPPVRATGA-RAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPA 114
SGS + K A + +P + GA +AKK A+ + + + P + P +
Sbjct: 102 SGSFKLNKKAASGEAKPKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKP 161
Query: 115 LSRAGSCRQRGARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGASKLRAVLEKLK 173
+ AG+ + + + + +P P P+ V + A P A+K + K K
Sbjct: 162 AAAAGAKKAKSPKKAKAAKPKKAP-KSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK 219
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 43.1 bits (100), Expect = 6e-04
Identities = 46/147 (31%), Positives = 57/147 (38%), Gaps = 24/147 (16%)
Query: 27 ARGAP-MDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERP-PVRATGARAKKA 84
A+GAP + E P P + G+ G A +G P Q P P GA +K
Sbjct: 1049 AQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKG 1108
Query: 85 PQRAQDTQPSDATSAPGAEGLEPPAAREPALS--------RAGSCRQRGARCSTKPRPPP 136
PQ P+ G GL PA PA S G Q+G++ PP
Sbjct: 1109 PQG-----PAGRDGVQGPVGLPGPAG--PAGSPGEDGDKGEIGEPGQKGSKGDKGENGPP 1161
Query: 137 GPWDVPSPGL--PVSAPILVRRDAAPG 161
GP PGL PV AP + D PG
Sbjct: 1162 GP-----PGLQGPVGAPGIAGGDGEPG 1183
Score = 32.0 bits (71), Expect = 1.4
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 23/124 (18%)
Query: 25 RNARGAPMDP----TESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERPPVRATGAR 80
R GAP P + P P+ + G+ GP + G+ + P Q P+ G
Sbjct: 669 RGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQG--PI---GPP 723
Query: 81 AKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTKPRPPPGPWD 140
+K PQ +P A PGA+G PP G Q G + + P P GP
Sbjct: 724 GEKGPQG----KPGLA-GLPGADG--PPG-------HPGKEGQSGEKGALGPPGPQGPIG 769
Query: 141 VPSP 144
P P
Sbjct: 770 YPGP 773
Score = 32.0 bits (71), Expect = 1.4
Identities = 44/161 (27%), Positives = 48/161 (29%), Gaps = 14/161 (8%)
Query: 14 EAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERP- 72
EAG PK R +G P A P A G GP G P P
Sbjct: 1280 EAGVGGPKGE-RGEKGEAGPP--GAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPG 1336
Query: 73 PVRATGARAKKA----PQRAQDTQPSDATSAPGAEGLE-PPAA-----REPALSRAGSCR 122
P G K P + PS PG G PP A R+ G
Sbjct: 1337 PAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAG 1396
Query: 123 QRGARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGAS 163
G T P P GP P P P V PGA+
Sbjct: 1397 AEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAA 1437
Score = 32.0 bits (71), Expect = 1.4
Identities = 33/145 (22%), Positives = 45/145 (31%), Gaps = 18/145 (12%)
Query: 20 PKASARNARGAPMDPTESPAAPEAALPKA--------GKFGPARKSGSRQKKSAPDTQER 71
P A+ ++ PM P P K G GP + G + + P TQ
Sbjct: 1434 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1493
Query: 72 PPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTK 131
P + G P+ PG GL P + G Q+G
Sbjct: 1494 PGAKGDGGIPG----------PAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPG 1543
Query: 132 PRPPPGPWDVPSPGLPVSAPILVRR 156
P PGP LP+ + RR
Sbjct: 1544 PPGSPGPPGEVIQPLPILSSKKTRR 1568
Score = 29.6 bits (65), Expect = 7.0
Identities = 31/140 (22%), Positives = 45/140 (32%), Gaps = 17/140 (12%)
Query: 36 ESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERP----PVRATG------ARAKKAP 85
+ P P+ G GP+ ++G + K P P P +TG A +K
Sbjct: 822 DGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGA 881
Query: 86 QRAQDTQPSDATSAP----GAEGLEPPAAREPALSRAGSCRQRGARCSTKPRPPPGPWDV 141
+ P G+ G P + +G G P+ P GP
Sbjct: 882 RGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGF 941
Query: 142 PSPGLPVSAPILVRRDAAPG 161
P P P P +D PG
Sbjct: 942 PGPKGPPGPP---GKDGLPG 958
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 43.1 bits (100), Expect = 6e-04
Identities = 46/147 (31%), Positives = 57/147 (38%), Gaps = 24/147 (16%)
Query: 27 ARGAP-MDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERP-PVRATGARAKKA 84
A+GAP + E P P + G+ G A +G P Q P P GA +K
Sbjct: 998 AQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKG 1057
Query: 85 PQRAQDTQPSDATSAPGAEGLEPPAAREPALS--------RAGSCRQRGARCSTKPRPPP 136
PQ P+ G GL PA PA S G Q+G++ PP
Sbjct: 1058 PQG-----PAGRDGVQGPVGLPGPAG--PAGSPGEDGDKGEIGEPGQKGSKGDKGENGPP 1110
Query: 137 GPWDVPSPGL--PVSAPILVRRDAAPG 161
GP PGL PV AP + D PG
Sbjct: 1111 GP-----PGLQGPVGAPGIAGGDGEPG 1132
Score = 32.0 bits (71), Expect = 1.4
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 23/124 (18%)
Query: 25 RNARGAPMDP----TESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERPPVRATGAR 80
R GAP P + P P+ + G+ GP + G+ + P Q P+ G
Sbjct: 618 RGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQG--PI---GPP 672
Query: 81 AKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTKPRPPPGPWD 140
+K PQ +P A PGA+G PP G Q G + + P P GP
Sbjct: 673 GEKGPQG----KPGLA-GLPGADG--PPG-------HPGKEGQSGEKGALGPPGPQGPIG 718
Query: 141 VPSP 144
P P
Sbjct: 719 YPGP 722
Score = 32.0 bits (71), Expect = 1.4
Identities = 44/161 (27%), Positives = 48/161 (29%), Gaps = 14/161 (8%)
Query: 14 EAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERP- 72
EAG PK R +G P A P A G GP G P P
Sbjct: 1229 EAGVGGPKGE-RGEKGEAGPP--GAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPG 1285
Query: 73 PVRATGARAKKA----PQRAQDTQPSDATSAPGAEGLE-PPAA-----REPALSRAGSCR 122
P G K P + PS PG G PP A R+ G
Sbjct: 1286 PAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAG 1345
Query: 123 QRGARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGAS 163
G T P P GP P P P V PGA+
Sbjct: 1346 AEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAA 1386
Score = 32.0 bits (71), Expect = 1.4
Identities = 33/145 (22%), Positives = 45/145 (31%), Gaps = 18/145 (12%)
Query: 20 PKASARNARGAPMDPTESPAAPEAALPKA--------GKFGPARKSGSRQKKSAPDTQER 71
P A+ ++ PM P P K G GP + G + + P TQ
Sbjct: 1383 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1442
Query: 72 PPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTK 131
P + G P+ PG GL P + G Q+G
Sbjct: 1443 PGAKGDGGIPG----------PAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPG 1492
Query: 132 PRPPPGPWDVPSPGLPVSAPILVRR 156
P PGP LP+ + RR
Sbjct: 1493 PPGSPGPPGEVIQPLPILSSKKTRR 1517
Score = 29.6 bits (65), Expect = 7.0
Identities = 31/140 (22%), Positives = 45/140 (32%), Gaps = 17/140 (12%)
Query: 36 ESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERP----PVRATG------ARAKKAP 85
+ P P+ G GP+ ++G + K P P P +TG A +K
Sbjct: 771 DGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGA 830
Query: 86 QRAQDTQPSDATSAP----GAEGLEPPAAREPALSRAGSCRQRGARCSTKPRPPPGPWDV 141
+ P G+ G P + +G G P+ P GP
Sbjct: 831 RGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGF 890
Query: 142 PSPGLPVSAPILVRRDAAPG 161
P P P P +D PG
Sbjct: 891 PGPKGPPGPP---GKDGLPG 907
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 43.1 bits (100), Expect = 6e-04
Identities = 46/147 (31%), Positives = 57/147 (38%), Gaps = 24/147 (16%)
Query: 27 ARGAP-MDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERP-PVRATGARAKKA 84
A+GAP + E P P + G+ G A +G P Q P P GA +K
Sbjct: 1037 AQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKG 1096
Query: 85 PQRAQDTQPSDATSAPGAEGLEPPAAREPALS--------RAGSCRQRGARCSTKPRPPP 136
PQ P+ G GL PA PA S G Q+G++ PP
Sbjct: 1097 PQG-----PAGRDGVQGPVGLPGPAG--PAGSPGEDGDKGEIGEPGQKGSKGDKGENGPP 1149
Query: 137 GPWDVPSPGL--PVSAPILVRRDAAPG 161
GP PGL PV AP + D PG
Sbjct: 1150 GP-----PGLQGPVGAPGIAGGDGEPG 1171
Score = 32.0 bits (71), Expect = 1.4
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 23/124 (18%)
Query: 25 RNARGAPMDP----TESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERPPVRATGAR 80
R GAP P + P P+ + G+ GP + G+ + P Q P+ G
Sbjct: 657 RGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQG--PI---GPP 711
Query: 81 AKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTKPRPPPGPWD 140
+K PQ +P A PGA+G PP G Q G + + P P GP
Sbjct: 712 GEKGPQG----KPGLA-GLPGADG--PPG-------HPGKEGQSGEKGALGPPGPQGPIG 757
Query: 141 VPSP 144
P P
Sbjct: 758 YPGP 761
Score = 32.0 bits (71), Expect = 1.4
Identities = 44/161 (27%), Positives = 48/161 (29%), Gaps = 14/161 (8%)
Query: 14 EAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERP- 72
EAG PK R +G P A P A G GP G P P
Sbjct: 1268 EAGVGGPKGE-RGEKGEAGPP--GAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPG 1324
Query: 73 PVRATGARAKKA----PQRAQDTQPSDATSAPGAEGLE-PPAA-----REPALSRAGSCR 122
P G K P + PS PG G PP A R+ G
Sbjct: 1325 PAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAG 1384
Query: 123 QRGARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGAS 163
G T P P GP P P P V PGA+
Sbjct: 1385 AEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAA 1425
Score = 32.0 bits (71), Expect = 1.4
Identities = 33/145 (22%), Positives = 45/145 (31%), Gaps = 18/145 (12%)
Query: 20 PKASARNARGAPMDPTESPAAPEAALPKA--------GKFGPARKSGSRQKKSAPDTQER 71
P A+ ++ PM P P K G GP + G + + P TQ
Sbjct: 1422 PGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGS 1481
Query: 72 PPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTK 131
P + G P+ PG GL P + G Q+G
Sbjct: 1482 PGAKGDGGIPG----------PAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPG 1531
Query: 132 PRPPPGPWDVPSPGLPVSAPILVRR 156
P PGP LP+ + RR
Sbjct: 1532 PPGSPGPPGEVIQPLPILSSKKTRR 1556
Score = 29.6 bits (65), Expect = 7.0
Identities = 31/140 (22%), Positives = 45/140 (32%), Gaps = 17/140 (12%)
Query: 36 ESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERP----PVRATG------ARAKKAP 85
+ P P+ G GP+ ++G + K P P P +TG A +K
Sbjct: 810 DGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGA 869
Query: 86 QRAQDTQPSDATSAP----GAEGLEPPAAREPALSRAGSCRQRGARCSTKPRPPPGPWDV 141
+ P G+ G P + +G G P+ P GP
Sbjct: 870 RGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGF 929
Query: 142 PSPGLPVSAPILVRRDAAPG 161
P P P P +D PG
Sbjct: 930 PGPKGPPGPP---GKDGLPG 946
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 43.1 bits (100), Expect = 6e-04
Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 20/166 (12%)
Query: 12 ASEAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQER 71
+S + +++ +S+ + + + + P PE AL + PA K R+ R
Sbjct: 2543 SSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREG--------R 2594
Query: 72 PPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTK 131
PP R +++ + + S ++S+ + ++ + S + S + S+
Sbjct: 2595 PPEPTPAKRKRRSSSSSSSSSSSSSSSSSSS------SSSSSSSSSSSSSSSSSSSSSSS 2648
Query: 132 PRPP-PGPWDVPSPGLPVSAPILVRRDAAPGASKLRAVLEKLKLSR 176
P P PGP +P P P P RR +P R ++ L+ SR
Sbjct: 2649 PSPAKPGPQALPKPASPKKPPPGERRSRSP-----RKPIDSLRDSR 2689
Score = 35.0 bits (79), Expect = 0.17
Identities = 39/137 (28%), Positives = 50/137 (36%), Gaps = 23/137 (16%)
Query: 28 RGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQ---------ERPPVRAT- 77
R AP + S ++PE P +SGS K P + E PP T
Sbjct: 1609 RAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTA 1668
Query: 78 --GARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCS--TKPR 133
G+R+ P+ T P +S P R+ LSR R R A S T+ R
Sbjct: 1669 RRGSRSSPEPKTKSRTPPRRRSSRS-----SPELTRKARLSR----RSRSASSSPETRSR 1719
Query: 134 PPPGPWDVPSPGLPVSA 150
PP PS P A
Sbjct: 1720 TPPRHRRSPSVSSPEPA 1736
Score = 30.0 bits (66), Expect = 5.4
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 16/131 (12%)
Query: 6 GKAMQRASEAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSA 65
G + +S + + R +R +P T+S P ++ + SR+ +SA
Sbjct: 1651 GSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSA 1710
Query: 66 ---PDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCR 122
P+T+ R P R + + +P+ A+ ++ S R + R +
Sbjct: 1711 SSSPETRSRTPPRHRRSPSVSSPEPAEKSRSS-------------RRRRSASSPRTKTTS 1757
Query: 123 QRGARCSTKPR 133
+RG S KPR
Sbjct: 1758 RRGRSPSPKPR 1768
Score = 29.3 bits (64), Expect = 9.2
Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 15/141 (10%)
Query: 6 GKAMQRASEAGATAPKASARNARG-APMDPTESPAAPEAALPKAGKFGPARKSGSRQKKS 64
G S A + + S+R RG + PT + P K +R S + ++S
Sbjct: 1817 GSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRS 1876
Query: 65 APDT---------QERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPAL 115
T PV +R++ + R + + S + PP R +
Sbjct: 1877 RSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSR 1936
Query: 116 SRAGSCRQRGARCSTKPRPPP 136
SR + R+R ++ R PP
Sbjct: 1937 SRTPTTRRR-----SRSRTPP 1952
Score = 29.3 bits (64), Expect = 9.2
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 53 PARKSGSRQKKSAPD-TQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAR 111
P ++S SR + ++ R P A G R+ A + + +S+ + PPA R
Sbjct: 2038 PRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATR 2097
Query: 112 EPALSRAGSCRQRGAR--CSTKPRPPPGPWD-VPSPGL 146
+ SR +R C ++P P P D SPG+
Sbjct: 2098 NHSGSRTPPVALNSSRMSCFSRPSMSPTPLDRCRSPGM 2135
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 43.1 bits (100), Expect = 6e-04
Identities = 47/169 (27%), Positives = 62/169 (36%), Gaps = 34/169 (20%)
Query: 12 ASEAGATAPKASARNARG---APMDPTESPAAPE--------AALPKAGKFGPARKSGSR 60
+S+ G T P A+ + G P P PA P A +P + K PA +R
Sbjct: 1364 SSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPV-TR 1422
Query: 61 QKKSAPDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGS 120
+ + P + P T KKAP ATSAP P + +P L
Sbjct: 1423 EGAATPSKGDLTPPAVTPVSLKKAP----------ATSAPKGGPATPSSKGDPTLP---- 1468
Query: 121 CRQRGARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGASKLRAVL 169
A P+ PP P V + P AP A GA L AV+
Sbjct: 1469 -----AVTPPSPKEPPAPKQVATSSSPKKAP---ATPAPMGAPTLPAVI 1509
Score = 41.2 bits (95), Expect = 0.002
Identities = 41/142 (28%), Positives = 53/142 (37%), Gaps = 22/142 (15%)
Query: 28 RGAPMDPTESPAAPEAAL----PKAGKFGPARKSGSRQ-------KKSAPDTQERPPVRA 76
+GAP P +P +P+ L PK PA S + K AP T P
Sbjct: 1169 KGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSP 1228
Query: 77 TGARAKKAPQRAQDT------QPSDATSAPGAEGLE-PPAAREPALSRA-GSCRQRGA-- 126
G A +P+ A T P + P +G PPAA P+L + +GA
Sbjct: 1229 KGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPN 1288
Query: 127 -RCSTKPRPPPGPWDVPSPGLP 147
T P P GP P G P
Sbjct: 1289 PAVVTPPSPKGGPATSPPKGAP 1310
Score = 40.0 bits (92), Expect = 0.005
Identities = 38/138 (27%), Positives = 52/138 (37%), Gaps = 9/138 (6%)
Query: 17 ATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERPPVRA 76
AT P A N A + P P + PK PA S K +P T PP +
Sbjct: 1279 ATPPHKGAPNP--AVVTPPSPKGGPATSPPKGAPTPPAATPPS--PKGSPGT---PPPKG 1331
Query: 77 TGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTKPRPPP 136
P + T AT+ G P+++E A + +G T P P
Sbjct: 1332 APTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKR 1391
Query: 137 GPWDVPSP-GLPVSAPIL 153
GP +PSP G P S ++
Sbjct: 1392 GP-AIPSPKGDPTSPAVI 1408
Score = 39.7 bits (91), Expect = 0.007
Identities = 45/144 (31%), Positives = 58/144 (40%), Gaps = 18/144 (12%)
Query: 18 TAPKASARNARGAPMDPTESPA-APEAALPKAGKFGPARKSGSRQKKSAPDTQERPPVRA 76
T P A+ + +G P P+ A P AA P + K GPA S K AP P
Sbjct: 941 TPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPS----PKGAPTPPAATPPSP 996
Query: 77 TGARAKKAPQRAQD----TQPS---DATSAPGAEGLE-PPAAREPAL--SRAGSCRQRGA 126
G A +P+ A T PS + P +G PPAA P+ S A + +GA
Sbjct: 997 KGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGA 1056
Query: 127 ---RCSTKPRPPPGPWDVPSPGLP 147
+T P P GP G P
Sbjct: 1057 PTTPAATLPSPKGGPATPSLKGAP 1080
Score = 36.6 bits (83), Expect = 0.057
Identities = 34/142 (23%), Positives = 49/142 (34%), Gaps = 10/142 (7%)
Query: 18 TAPKASARNARGAPMDPTESPA-APEAALPKAGKFGPAR----KSGSRQKKSAPDTQERP 72
T P A+ + +G P P+ A P A P + K PA K S + P + +
Sbjct: 987 TPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGS 1046
Query: 73 PVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSC--RQRGA---R 127
P + A P + P +G P A P + G +GA
Sbjct: 1047 PAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPP 1106
Query: 128 CSTKPRPPPGPWDVPSPGLPVS 149
+T P P G P G P +
Sbjct: 1107 AATPPSPKGGLATPPHKGAPTT 1128
Score = 36.6 bits (83), Expect = 0.057
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 20/140 (14%)
Query: 12 ASEAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKK--SAPDTQ 69
A + T+P + + + +P P A +P+A K PA+K + K+ AP +
Sbjct: 1632 APKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASKGLPAKKGPTALKEVLVAPAPE 1691
Query: 70 ERPPVRATGARAKKAPQRAQDTQPSDATSAP---------GAEGLEPPAAREPAL--SRA 118
P + A +K PQ T+ S ATS P G++G A P L +
Sbjct: 1692 STPIITAP---TRKGPQ----TKKSSATSPPICPDPSAKNGSKGPLSTVAPAPLLPVQKD 1744
Query: 119 GSCRQRGARCSTKPRPPPGP 138
S +G S P+ P P
Sbjct: 1745 SSKTAKGKDASHSPKGPLAP 1764
Score = 35.0 bits (79), Expect = 0.17
Identities = 37/144 (25%), Positives = 47/144 (32%), Gaps = 17/144 (11%)
Query: 11 RASEAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQE 70
+ S A PK ++ P P SPAA LPK PA S K P T
Sbjct: 1020 KGSPAATPFPKGASTPPAATPPSPKGSPAA--TPLPKGAPTTPAATLPS--PKGGPAT-- 1073
Query: 71 RPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCR--QRGA-- 126
+ P A P + P +G P A P + G +GA
Sbjct: 1074 ------PSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPT 1127
Query: 127 -RCSTKPRPPPGPWDVPSPGLPVS 149
+T P P G P G P +
Sbjct: 1128 TPAATPPSPKGGLATPPPKGAPTT 1151
Score = 31.2 bits (69), Expect = 2.4
Identities = 37/141 (26%), Positives = 45/141 (31%), Gaps = 33/141 (23%)
Query: 26 NARGAPMDPTE---SPAAPEAALPKAGKFGPARKSGSRQKKSA-PDTQERP--------- 72
++R P+ PT S P PK PA S +K A P +E P
Sbjct: 1521 SSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEAS 1580
Query: 73 -PVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTK 131
P T + K AP + P TS E PPA T
Sbjct: 1581 SPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAV-------------------TP 1621
Query: 132 PRPPPGPWDVPSPGLPVSAPI 152
P P GP G P S P+
Sbjct: 1622 PSPEKGPATPAPKGTPTSPPV 1642
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 42.4 bits (98), Expect = 0.001
Identities = 50/175 (28%), Positives = 68/175 (38%), Gaps = 19/175 (10%)
Query: 5 HGKAMQRASEAGATAPKASARNARGAPMDPTESP-AAPEAALPKAGKFGPARKS------ 57
H + R + + A AP +A+G M P SP AA EAA + + GPA +
Sbjct: 463 HARLPSRRARSSAPAP-----SAQGRCMTPARSPVAAREAARLRGARPGPAASAATRMWQ 517
Query: 58 GSRQKKSAPDTQERPP-VRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALS 116
GS +++ PD QE P + + R P +Q PS G AR L
Sbjct: 518 GSGRRRPGPDPQELDPHCKLSFPRLPLTPTESQ--PPSHNLFVEELRGARAALARGWMLP 575
Query: 117 RAGSCRQRGARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGASKLRAVLEK 171
RA R C PR PG + + + L R A K RA L +
Sbjct: 576 RA----LRRQLCPIDPRARPGSVAPAAASGSIESSSLSGRAARLALGKHRACLRR 626
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 42.4 bits (98), Expect = 0.001
Identities = 50/175 (28%), Positives = 68/175 (38%), Gaps = 19/175 (10%)
Query: 5 HGKAMQRASEAGATAPKASARNARGAPMDPTESP-AAPEAALPKAGKFGPARKS------ 57
H + R + + A AP +A+G M P SP AA EAA + + GPA +
Sbjct: 463 HARLPSRRARSSAPAP-----SAQGRCMTPARSPVAAREAARLRGARPGPAASAATRMWQ 517
Query: 58 GSRQKKSAPDTQERPP-VRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALS 116
GS +++ PD QE P + + R P +Q PS G AR L
Sbjct: 518 GSGRRRPGPDPQELDPHCKLSFPRLPLTPTESQ--PPSHNLFVEELRGARAALARGWMLP 575
Query: 117 RAGSCRQRGARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGASKLRAVLEK 171
RA R C PR PG + + + L R A K RA L +
Sbjct: 576 RA----LRRQLCPIDPRARPGSVAPAAASGSIESSSLSGRAARLALGKHRACLRR 626
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 42.4 bits (98), Expect = 0.001
Identities = 37/119 (31%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 41 PEAALPKAGKFGPARKSGSRQKKSAPDTQERPPVRAT-GARAKK--APQRAQDTQPSDAT 97
P+AAL PA K AP PP +A+ GA + AP A + DA
Sbjct: 392 PQAALKGGAGLEPAPKDAP----PAPAVPPAPPAQASFGAFSGPGGAPDSAFARRSPDAV 447
Query: 98 SAPGAEGLEPPAAREPALSRA-----GSCRQRGARCSTKPRPPPGPWDVPSPGLPVSAP 151
++PGA P R+ A + A G C G P P P P P P P P
Sbjct: 448 ASPGAPAPAPAPFRDLASAAATEGGGGDCADAGTAGPAPPPPAPSPRPGPRPPSPAEEP 506
Score = 30.4 bits (67), Expect = 4.1
Identities = 40/152 (26%), Positives = 52/152 (34%), Gaps = 28/152 (18%)
Query: 1 MQPW--HGKAMQRASEAGATAPKASARNAR-----GAPMDPTESPAAPEAALPKAGKFGP 53
+Q W + +A R E P A N+ G PMDP E + K +
Sbjct: 149 VQVWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPMDPEEIARKELEKMEKKKR--- 205
Query: 54 ARKSGSRQKKSAPDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREP 113
+ +K +Q R G AP SD+ S G EPP P
Sbjct: 206 ------KHEKKLLKSQGRHLHSPGGLSLHSAPS-------SDSDSGGGGLSPEPPEPPPP 252
Query: 114 ALSRAGSCRQRGARCSTKPRPPPGPWDVPSPG 145
A G+ A T P PP P P+PG
Sbjct: 253 AAKGPGAHASGAA--GTAPAPPGEP---PAPG 279
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 42.0 bits (97), Expect = 0.001
Identities = 43/149 (28%), Positives = 58/149 (38%), Gaps = 17/149 (11%)
Query: 25 RNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERPPVRATGARAKKA 84
+ A G P + P P A PK K SGS AP +PP A AK
Sbjct: 1261 KRAHGTPPPVSPKPPPPPTA-PKPVKAVAGLPSGSAGPSPAPSPARQPPA----ALAK-- 1313
Query: 85 PQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTKPRPPPGPWDVPSP 144
P + GA +PP+ PAL + A + PP P + SP
Sbjct: 1314 --------PPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAAAAAAAAAAPPAPPEGASP 1365
Query: 145 GLPVSAPILVRRDAAPGASKLRAVLEKLK 173
G SA + +A A+ L+AV EK++
Sbjct: 1366 G--DSARQKLEETSACLAAALQAVEEKIR 1392
Score = 33.5 bits (75), Expect = 0.49
Identities = 47/191 (24%), Positives = 63/191 (32%), Gaps = 40/191 (20%)
Query: 5 HGKAMQRASEAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKS 64
H + Q G P + ++ +D +P P P+ + P R S ++ S
Sbjct: 702 HMSSSQELLGDGPPGPSSPMSRSQEYLLDEGPAPGTP----PREAR--PGRHGHSIKRAS 755
Query: 65 APDTQERP-PVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAARE-------PALS 116
P +P V G PQ T+P + G G P A+ P
Sbjct: 756 VPPVPGKPRQVLPPGTSHFTPPQTPTKTRPGSPQALGGPHGPAPATAKVKPTPQLLPPTE 815
Query: 117 RAGSCRQ-------RG-------------ARCSTKPRPPPGPWDVPSPGLPVSAPILVRR 156
R S R RG + P PPP P VP+ LP A
Sbjct: 816 RPMSPRSLPQSPTHRGFAYVLPQPVEGEVGPAAPGPAPPPVPTAVPTLCLPPEA------ 869
Query: 157 DAAPGASKLRA 167
DA PG K RA
Sbjct: 870 DAEPGRPKKRA 880
Score = 31.6 bits (70), Expect = 1.8
Identities = 35/141 (24%), Positives = 47/141 (33%), Gaps = 14/141 (9%)
Query: 20 PKASARNARGAPMDPTE---SPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQ--ERPPV 74
PKA R A P P + P + + GP P T PP+
Sbjct: 1152 PKAKEREAGPEPPPPLSVYHNGTGTVRRRPASEQAGPPELPPPPPPAEPPPTDLAHLPPL 1211
Query: 75 RATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGS---CRQRGARCSTK 131
A+K + +P P +G P +++ L GS R G
Sbjct: 1212 PPPEGEARKPAKPPVSPKPVLTQPVPKLQGSPTPTSKKVPLPGPGSPEVKRAHGTPPPVS 1271
Query: 132 PRPPPGPWDVPSP-----GLP 147
P+PPP P P P GLP
Sbjct: 1272 PKPPPPP-TAPKPVKAVAGLP 1291
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 42.0 bits (97), Expect = 0.001
Identities = 44/157 (28%), Positives = 57/157 (36%), Gaps = 15/157 (9%)
Query: 25 RNARGAPMDPTESPAAPEAALPKAGKFGP----ARKSGSRQKKSAPDTQERPPVRATGAR 80
R+ R PT+SP A A P G R+ G+ Q +++P + P R R
Sbjct: 227 RSPRPCGRPPTDSPDAGGAGRPLDGYISALLRRRRRRGAGQPRTSPGGADGGPRRQNSVR 286
Query: 81 AKKAPQRAQDTQPSDATSAPGAEGLEPPAAREP----ALSRAGSCRQRGARCSTKPRPP- 135
QR D PS ++ P E P ALSRA + PP
Sbjct: 287 -----QRPPDASPSPGSARPAREPSLERVGGHPTSPAALSRAWASSWESEAAPEPAAPPA 341
Query: 136 -PGPWDVPSPGLPVSAPILVRRDAAPGASKLRAVLEK 171
P P D P+ G V A + AA RA K
Sbjct: 342 APSPPDSPAEGRLVKAQYIPGAQAATRGLPGRAARRK 378
Score = 32.3 bits (72), Expect = 1.1
Identities = 36/138 (26%), Positives = 46/138 (33%), Gaps = 19/138 (13%)
Query: 9 MQRASEAGATAPKASARNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDT 68
++R GA P+ S A G P P A P G PAR+ + P +
Sbjct: 257 LRRRRRRGAGQPRTSPGGADGGPRRQNSVRQRPPDASPSPGSARPAREPSLERVGGHPTS 316
Query: 69 -------------QERPPVRATGARAKKAPQRAQDTQPSDATSAPGAE----GLEPPAAR 111
E P A A P + + A PGA+ GL AAR
Sbjct: 317 PAALSRAWASSWESEAAPEPAAPPAAPSPPDSPAEGRLVKAQYIPGAQAATRGLPGRAAR 376
Query: 112 E--PALSRAGSCRQRGAR 127
P L+R S Q R
Sbjct: 377 RKPPPLTRGRSVEQSPPR 394
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 41.6 bits (96), Expect = 0.002
Identities = 47/143 (32%), Positives = 54/143 (37%), Gaps = 17/143 (11%)
Query: 25 RNARGAPMDPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPD----TQERPPVRATGAR 80
R + GA PAA + A P G AR R AP + RP +
Sbjct: 6 RPSAGAGAGAGRRPAARQVA-PPGGPXSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCL 64
Query: 81 AKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPA-LSRAGSCRQRGARCSTKPRPPP-GP 138
A P RA PS A PG P AA +P L G C GAR P P G
Sbjct: 65 ATPEPARA----PSIAEPGPGI----PVAAAKPGVLPGGGGCT--GARTENPPLSPTRGD 114
Query: 139 WDVPSPGLPVSAPILVRRDAAPG 161
VP P P+S R+A PG
Sbjct: 115 CRVPVPAAPISLRWRSGREARPG 137
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 41.6 bits (96), Expect = 0.002
Identities = 40/158 (25%), Positives = 52/158 (32%), Gaps = 21/158 (13%)
Query: 10 QRASEAGATAPKASARNARGAPMDPTESPAAPEAA-----LPKAGKFGPARKSGSRQKKS 64
+R A P P P SP AA + G+ GP G+ +K
Sbjct: 903 ERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKG 962
Query: 65 APDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQR 124
P E+ P+ TG + P PG G A + G Q+
Sbjct: 963 VPG--EKGPIGPTGRDGVQGP-----------VGLPGPAGPPGVAGEDGDKGEVGDPGQK 1009
Query: 125 GARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGA 162
G + + PPGP P P PV P D PGA
Sbjct: 1010 GTKGNKGEHGPPGP---PGPIGPVGQPGAAGADGEPGA 1044
Score = 37.7 bits (86), Expect = 0.026
Identities = 37/124 (29%), Positives = 45/124 (36%), Gaps = 19/124 (15%)
Query: 25 RNARGAPMDP-TESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERPPVRATGARAKK 83
R G P P + P GK GPA GS ++ + P A GA K
Sbjct: 1207 RGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPG--AIGAPGKT 1264
Query: 84 APQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTKPRPPPGPWDVPS 143
P P+ PG +GL GS Q+G +T PPGP V
Sbjct: 1265 GP-----VGPAGPAGKPGPDGLR---------GLPGSVGQQGRPGATGQAGPPGP--VGP 1308
Query: 144 PGLP 147
PGLP
Sbjct: 1309 PGLP 1312
Score = 30.8 bits (68), Expect = 3.1
Identities = 39/130 (30%), Positives = 45/130 (34%), Gaps = 18/130 (13%)
Query: 35 TESPAAPEAALPK--AGKFGPARKSGSRQKKSAPDTQERPPVRAT-GARAKKAPQRAQDT 91
T P P P+ AG+ GP + G P Q P G + P A
Sbjct: 832 TGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGK 891
Query: 92 Q-PSDATSAPGAEGLEPPAAREPALSR----------AGSCRQRGARCSTKPRPPPGPWD 140
P+ PG GL P A P L AGS +RGA S P PPG
Sbjct: 892 DGPAGLRGFPGERGL-PGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGR-- 948
Query: 141 VPSPGLPVSA 150
P P P A
Sbjct: 949 -PGPQGPPGA 957
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 41.6 bits (96), Expect = 0.002
Identities = 40/158 (25%), Positives = 52/158 (32%), Gaps = 21/158 (13%)
Query: 10 QRASEAGATAPKASARNARGAPMDPTESPAAPEAA-----LPKAGKFGPARKSGSRQKKS 64
+R A P P P SP AA + G+ GP G+ +K
Sbjct: 882 ERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKG 941
Query: 65 APDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQR 124
P E+ P+ TG + P PG G A + G Q+
Sbjct: 942 VPG--EKGPIGPTGRDGVQGP-----------VGLPGPAGPPGVAGEDGDKGEVGDPGQK 988
Query: 125 GARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGA 162
G + + PPGP P P PV P D PGA
Sbjct: 989 GTKGNKGEHGPPGP---PGPIGPVGQPGAAGADGEPGA 1023
Score = 37.7 bits (86), Expect = 0.026
Identities = 37/124 (29%), Positives = 45/124 (36%), Gaps = 19/124 (15%)
Query: 25 RNARGAPMDP-TESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERPPVRATGARAKK 83
R G P P + P GK GPA GS ++ + P A GA K
Sbjct: 1186 RGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPG--AIGAPGKT 1243
Query: 84 APQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTKPRPPPGPWDVPS 143
P P+ PG +GL GS Q+G +T PPGP V
Sbjct: 1244 GP-----VGPAGPAGKPGPDGLR---------GLPGSVGQQGRPGATGQAGPPGP--VGP 1287
Query: 144 PGLP 147
PGLP
Sbjct: 1288 PGLP 1291
Score = 30.8 bits (68), Expect = 3.1
Identities = 39/130 (30%), Positives = 45/130 (34%), Gaps = 18/130 (13%)
Query: 35 TESPAAPEAALPK--AGKFGPARKSGSRQKKSAPDTQERPPVRAT-GARAKKAPQRAQDT 91
T P P P+ AG+ GP + G P Q P G + P A
Sbjct: 811 TGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGK 870
Query: 92 Q-PSDATSAPGAEGLEPPAAREPALSR----------AGSCRQRGARCSTKPRPPPGPWD 140
P+ PG GL P A P L AGS +RGA S P PPG
Sbjct: 871 DGPAGLRGFPGERGL-PGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGR-- 927
Query: 141 VPSPGLPVSA 150
P P P A
Sbjct: 928 -PGPQGPPGA 936
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 41.6 bits (96), Expect = 0.002
Identities = 40/158 (25%), Positives = 52/158 (32%), Gaps = 21/158 (13%)
Query: 10 QRASEAGATAPKASARNARGAPMDPTESPAAPEAA-----LPKAGKFGPARKSGSRQKKS 64
+R A P P P SP AA + G+ GP G+ +K
Sbjct: 989 ERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKG 1048
Query: 65 APDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQR 124
P E+ P+ TG + P PG G A + G Q+
Sbjct: 1049 VPG--EKGPIGPTGRDGVQGP-----------VGLPGPAGPPGVAGEDGDKGEVGDPGQK 1095
Query: 125 GARCSTKPRPPPGPWDVPSPGLPVSAPILVRRDAAPGA 162
G + + PPGP P P PV P D PGA
Sbjct: 1096 GTKGNKGEHGPPGP---PGPIGPVGQPGAAGADGEPGA 1130
Score = 37.7 bits (86), Expect = 0.026
Identities = 37/124 (29%), Positives = 45/124 (36%), Gaps = 19/124 (15%)
Query: 25 RNARGAPMDP-TESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERPPVRATGARAKK 83
R G P P + P GK GPA GS ++ + P A GA K
Sbjct: 1293 RGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPG--AIGAPGKT 1350
Query: 84 APQRAQDTQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTKPRPPPGPWDVPS 143
P P+ PG +GL GS Q+G +T PPGP V
Sbjct: 1351 GP-----VGPAGPAGKPGPDGLR---------GLPGSVGQQGRPGATGQAGPPGP--VGP 1394
Query: 144 PGLP 147
PGLP
Sbjct: 1395 PGLP 1398
Score = 30.8 bits (68), Expect = 3.1
Identities = 39/130 (30%), Positives = 45/130 (34%), Gaps = 18/130 (13%)
Query: 35 TESPAAPEAALPK--AGKFGPARKSGSRQKKSAPDTQERPPVRAT-GARAKKAPQRAQDT 91
T P P P+ AG+ GP + G P Q P G + P A
Sbjct: 918 TGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGK 977
Query: 92 Q-PSDATSAPGAEGLEPPAAREPALSR----------AGSCRQRGARCSTKPRPPPGPWD 140
P+ PG GL P A P L AGS +RGA S P PPG
Sbjct: 978 DGPAGLRGFPGERGL-PGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGR-- 1034
Query: 141 VPSPGLPVSA 150
P P P A
Sbjct: 1035 -PGPQGPPGA 1043
>gi|32469511 B-cell CLL/lymphoma 6, member B (zinc finger protein)
[Homo sapiens]
Length = 480
Score = 41.6 bits (96), Expect = 0.002
Identities = 38/137 (27%), Positives = 52/137 (37%), Gaps = 13/137 (9%)
Query: 33 DPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERPPVRATGARAKKAPQRAQDTQ 92
+P P AP P+ + P + SR P + P +A KK ++Q
Sbjct: 148 EPPTPPTAPPPGSPRRSEGHPDPPTESRSCSQGPPSPASPDPKA--CNWKKYKYIVLNSQ 205
Query: 93 PSDATSAPG--AEGLEPPAAREPALSRAGSCRQRGARCSTKPRPPPGPWDVPSP------ 144
S A S G + G P AR P+ A S + S++ P PGP SP
Sbjct: 206 ASQAGSLVGERSSGQPCPQARLPSGDEASSSSSSSSSSSSEEGPIPGPQSRLSPTAATVQ 265
Query: 145 ---GLPVSAPILVRRDA 158
G P S P L+ A
Sbjct: 266 FKCGAPASTPYLLTSQA 282
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,240,068
Number of Sequences: 37866
Number of extensions: 1212995
Number of successful extensions: 9565
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 823
Number of HSP's that attempted gapping in prelim test: 7588
Number of HSP's gapped (non-prelim): 2396
length of query: 522
length of database: 18,247,518
effective HSP length: 107
effective length of query: 415
effective length of database: 14,195,856
effective search space: 5891280240
effective search space used: 5891280240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.