Guide to the Human Genome
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Name: C3orf59 Sequence: fasta or formatted (491aa) NCBI GI: 197333817
Description:

hypothetical protein LOC151963

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         34           2
 C cysteine            2.2         11           2
 D aspartate           7.1         35           2
 E glutamate           5.5         27           3
 F phenylalanine       4.1         20           2
 G glycine             4.5         22           2
 H histidine           3.1         15           1
 I isoleucine          5.7         28           3
 K lysine              6.9         34           2
 L leucine            10.8         53           3
 M methionine          3.1         15           2
 N asparagine          4.1         20           2
 P proline             5.1         25           1
 Q glutamine           4.1         20           2
 R arginine            5.1         25           2
 S serine              7.5         37           3
 T threonine           3.9         19           2
 V valine              5.9         29           2
 W tryptophan          1.6          8           1
 Y tyrosine            2.9         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC151963 
TMEM102               0.113   transmembrane protein 102 
MAB21L2               0.031   mab-21-like protein 2 
MAB21L1               0.030   mab-21-like protein 1 
C6orf150              0.023   hypothetical protein LOC115004 
C1orf161              0.018   hypothetical protein LOC126868 
RAPGEF1               0.008   guanine nucleotide-releasing factor 2 isoform b [Hom...
RAPGEF1               0.008   guanine nucleotide-releasing factor 2 isoform a [Hom...
C2orf54               0.008   hypothetical protein LOC79919 isoform 2 
C2orf54               0.008   hypothetical protein LOC79919 isoform 1 
WDR72                 0.006   WD repeat domain 72 
MAGEE1                0.005   melanoma antigen family E, 1 
KIF24                 0.005   kinesin family member 24 
PSME4                 0.005   proteasome (prosome, macropain) activator subunit 4...
PPFIBP1               0.005   PTPRF interacting protein binding protein 1 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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