Guide to the Human Genome
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Name: MAB21L1 Sequence: fasta or formatted (359aa) NCBI GI: 5031897
Description:

mab-21-like protein 1

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         27           2
 C cysteine            3.6         13           1
 D aspartate           4.2         15           2
 E glutamate           7.2         26           1
 F phenylalanine       3.1         11           1
 G glycine             4.5         16           2
 H histidine           2.5          9           1
 I isoleucine          4.2         15           1
 K lysine              7.2         26           2
 L leucine            11.4         41           2
 M methionine          1.9          7           1
 N asparagine          4.2         15           2
 P proline             4.7         17           1
 Q glutamine           4.2         15           1
 R arginine            7.0         25           2
 S serine              7.2         26           2
 T threonine           3.1         11           1
 V valine              7.2         26           2
 W tryptophan          1.9          7           1
 Y tyrosine            3.1         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mab-21-like protein 1 
MAB21L2               0.948   mab-21-like protein 2 
C1orf161              0.103   hypothetical protein LOC126868 
C6orf150              0.073   hypothetical protein LOC115004 
C3orf59               0.041   hypothetical protein LOC151963 
ITPRIP                0.024   inositol 1,4,5-triphosphate receptor interacting pro...
ITPRIPL1              0.023   inositol 1,4,5-triphosphate receptor interacting pro...
ITPRIPL1              0.023   inositol 1,4,5-triphosphate receptor interacting pro...
ITPRIPL2              0.017   inositol 1,4,5-triphosphate receptor interacting pro...
C2orf54               0.014   hypothetical protein LOC79919 isoform 1 
SMCR7L                0.013   hypothetical protein LOC54471 
C2orf54               0.013   hypothetical protein LOC79919 isoform 2 
SMCR7                 0.007   Smith-Magenis syndrome chromosome region, candidate...
SMCR7                 0.007   Smith-Magenis syndrome chromosome region, candidate ...
TMEM102               0.007   transmembrane protein 102 
RASGRP4               0.006   RAS guanyl releasing protein 4 isoform a 
RASGRP4               0.006   RAS guanyl releasing protein 4 isoform d 
RASGRP4               0.006   RAS guanyl releasing protein 4 isoform c 
RASGRP4               0.006   RAS guanyl releasing protein 4 isoform b 
IRGC                  0.006   immunity-related GTPase family, cinema 
LOC100134008          0.004   PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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