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Search of human proteins with 11545875
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11545875 GDNF family receptor alpha 4 isoform a precursor
[Homo sapiens]
(269 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11545875 GDNF family receptor alpha 4 isoform a precursor [Ho... 559 e-160
gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Ho... 467 e-132
gi|224282178 GDNF family receptor alpha 1 isoform b preproprotei... 191 7e-49
gi|22035692 GDNF family receptor alpha 1 isoform b preproprotein... 191 7e-49
gi|4885269 GDNF family receptor alpha 1 isoform a preproprotein ... 191 7e-49
gi|47078235 GDNF family receptor alpha 2 preproprotein [Homo sap... 177 9e-45
gi|22035694 GDNF family receptor alpha 3 preproprotein [Homo sap... 151 5e-37
gi|148231468 GDNF family receptor alpha like [Homo sapiens] 64 2e-10
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 41 0.001
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 34 0.15
gi|21264602 laminin alpha 5 [Homo sapiens] 34 0.15
gi|38348414 von Willebrand factor C domain containing 2 [Homo sa... 34 0.15
gi|134244285 Notch homolog 3 [Homo sapiens] 33 0.26
gi|239749693 PREDICTED: similar to hCG1806822 [Homo sapiens] 33 0.26
gi|38788416 laminin, alpha 1 precursor [Homo sapiens] 33 0.34
gi|157909822 pragmin [Homo sapiens] 33 0.34
gi|167466169 growth arrest-specific 1 [Homo sapiens] 32 0.44
gi|134031945 SCO-spondin [Homo sapiens] 32 0.44
gi|115511036 alpha-kinase 3 [Homo sapiens] 32 0.76
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap... 31 0.99
gi|61966777 V-set and immunoglobulin domain containing 8 [Homo s... 31 0.99
gi|169218002 PREDICTED: hypothetical protein [Homo sapiens] 30 1.7
gi|239742701 PREDICTED: hypothetical protein XP_002342609 [Homo ... 30 1.7
gi|169163057 PREDICTED: hypothetical protein [Homo sapiens] 30 1.7
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 30 1.7
gi|189083802 myosin VIIA isoform 2 [Homo sapiens] 30 1.7
gi|189083798 myosin VIIA isoform 1 [Homo sapiens] 30 1.7
gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens] 30 1.7
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens] 30 1.7
gi|239747084 PREDICTED: hypothetical protein XP_002343912 [Homo ... 30 2.2
>gi|11545875 GDNF family receptor alpha 4 isoform a precursor [Homo
sapiens]
Length = 269
Score = 559 bits (1441), Expect = e-160
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCP 60
MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCP
Sbjct: 1 MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCP 60
Query: 61 RARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEP 120
RARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEP
Sbjct: 61 RARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEP 120
Query: 121 LNFCERSRVCRPRLLAFQVSCTPAPSAPDGCLLDQGARCLRAYAGLVGTAVTPNYVDNVS 180
LNFCERSRVCRPRLLAFQVSCTPAPSAPDGCLLDQGARCLRAYAGLVGTAVTPNYVDNVS
Sbjct: 121 LNFCERSRVCRPRLLAFQVSCTPAPSAPDGCLLDQGARCLRAYAGLVGTAVTPNYVDNVS 180
Query: 181 ARVAPWCDCGASGNRREDCEAFRGLFTRNRCLDGAIQAFASGWPPVLLDQLNPQGDPEHS 240
ARVAPWCDCGASGNRREDCEAFRGLFTRNRCLDGAIQAFASGWPPVLLDQLNPQGDPEHS
Sbjct: 181 ARVAPWCDCGASGNRREDCEAFRGLFTRNRCLDGAIQAFASGWPPVLLDQLNPQGDPEHS 240
Query: 241 LLQVSSTGRALERRSLLSILPVLALPALL 269
LLQVSSTGRALERRSLLSILPVLALPALL
Sbjct: 241 LLQVSSTGRALERRSLLSILPVLALPALL 269
>gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Homo
sapiens]
Length = 299
Score = 467 bits (1202), Expect = e-132
Identities = 242/299 (80%), Positives = 245/299 (81%), Gaps = 30/299 (10%)
Query: 1 MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCP 60
MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCP
Sbjct: 1 MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCP 60
Query: 61 RARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEP 120
RARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEP
Sbjct: 61 RARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEP 120
Query: 121 LNFCERSRVCRPRLLA------FQVSCTPAPSAP---------DGCLLDQGARCLRAYAG 165
LNFCERSRVCR A + +PA P G + R R AG
Sbjct: 121 LNFCERSRVCRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAG 180
Query: 166 L---------------VGTAVTPNYVDNVSARVAPWCDCGASGNRREDCEAFRGLFTRNR 210
GTAVTPNYVDNVSARVAPWCDCGASGNRREDCEAFRGLFTRNR
Sbjct: 181 PGRPLPARLRGPRGVPAGTAVTPNYVDNVSARVAPWCDCGASGNRREDCEAFRGLFTRNR 240
Query: 211 CLDGAIQAFASGWPPVLLDQLNPQGDPEHSLLQVSSTGRALERRSLLSILPVLALPALL 269
CLDGAIQAFASGWPPVLLDQLNPQGDPEHSLLQVSSTGRALERRSLLSILPVLALPALL
Sbjct: 241 CLDGAIQAFASGWPPVLLDQLNPQGDPEHSLLQVSSTGRALERRSLLSILPVLALPALL 299
>gi|224282178 GDNF family receptor alpha 1 isoform b preproprotein
[Homo sapiens]
Length = 460
Score = 191 bits (484), Expect = 7e-49
Identities = 91/208 (43%), Positives = 121/208 (58%), Gaps = 7/208 (3%)
Query: 23 GNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALRRFFARGPPALTHA 82
GN C+DAA+AC D C++ RS Y+ C + C R +C +ALR+FF + P ++
Sbjct: 146 GNNCLDAAKACNLDDICKKYRSAYITPCTTSVSNDVCNRRKCHKALRQFFDKVPAKHSYG 205
Query: 83 LLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRPRLLAFQVSCT 142
+LFC C AC ERRRQT VP C++ P+CL + C+ + +CR RL F +C
Sbjct: 206 MLFCSCRDIACTERRRQTIVPVCSYEER--EKPNCLNLQDSCKTNYICRSRLADFFTNCQ 263
Query: 143 PAPSAPDGCLLDQGARCLRAYAGLVGTAVTPNYVDNVSARVAPWCDCGASGNRREDCEAF 202
P + CL + A CL AY+GL+GT +TPNY+D+ S VAPWCDC SGN E+C F
Sbjct: 264 PESRSVSSCLKENYADCLLAYSGLIGTVMTPNYIDSSSLSVAPWCDCSNSGNDLEECLKF 323
Query: 203 RGLFTRNRCLDGAIQAFASG-----WPP 225
F N CL AIQAF +G W P
Sbjct: 324 LNFFKDNTCLKNAIQAFGNGSDVTVWQP 351
>gi|22035692 GDNF family receptor alpha 1 isoform b preproprotein
[Homo sapiens]
Length = 460
Score = 191 bits (484), Expect = 7e-49
Identities = 91/208 (43%), Positives = 121/208 (58%), Gaps = 7/208 (3%)
Query: 23 GNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALRRFFARGPPALTHA 82
GN C+DAA+AC D C++ RS Y+ C + C R +C +ALR+FF + P ++
Sbjct: 146 GNNCLDAAKACNLDDICKKYRSAYITPCTTSVSNDVCNRRKCHKALRQFFDKVPAKHSYG 205
Query: 83 LLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRPRLLAFQVSCT 142
+LFC C AC ERRRQT VP C++ P+CL + C+ + +CR RL F +C
Sbjct: 206 MLFCSCRDIACTERRRQTIVPVCSYEER--EKPNCLNLQDSCKTNYICRSRLADFFTNCQ 263
Query: 143 PAPSAPDGCLLDQGARCLRAYAGLVGTAVTPNYVDNVSARVAPWCDCGASGNRREDCEAF 202
P + CL + A CL AY+GL+GT +TPNY+D+ S VAPWCDC SGN E+C F
Sbjct: 264 PESRSVSSCLKENYADCLLAYSGLIGTVMTPNYIDSSSLSVAPWCDCSNSGNDLEECLKF 323
Query: 203 RGLFTRNRCLDGAIQAFASG-----WPP 225
F N CL AIQAF +G W P
Sbjct: 324 LNFFKDNTCLKNAIQAFGNGSDVTVWQP 351
>gi|4885269 GDNF family receptor alpha 1 isoform a preproprotein
[Homo sapiens]
Length = 465
Score = 191 bits (484), Expect = 7e-49
Identities = 91/208 (43%), Positives = 121/208 (58%), Gaps = 7/208 (3%)
Query: 23 GNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALRRFFARGPPALTHA 82
GN C+DAA+AC D C++ RS Y+ C + C R +C +ALR+FF + P ++
Sbjct: 151 GNNCLDAAKACNLDDICKKYRSAYITPCTTSVSNDVCNRRKCHKALRQFFDKVPAKHSYG 210
Query: 83 LLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRPRLLAFQVSCT 142
+LFC C AC ERRRQT VP C++ P+CL + C+ + +CR RL F +C
Sbjct: 211 MLFCSCRDIACTERRRQTIVPVCSYEER--EKPNCLNLQDSCKTNYICRSRLADFFTNCQ 268
Query: 143 PAPSAPDGCLLDQGARCLRAYAGLVGTAVTPNYVDNVSARVAPWCDCGASGNRREDCEAF 202
P + CL + A CL AY+GL+GT +TPNY+D+ S VAPWCDC SGN E+C F
Sbjct: 269 PESRSVSSCLKENYADCLLAYSGLIGTVMTPNYIDSSSLSVAPWCDCSNSGNDLEECLKF 328
Query: 203 RGLFTRNRCLDGAIQAFASG-----WPP 225
F N CL AIQAF +G W P
Sbjct: 329 LNFFKDNTCLKNAIQAFGNGSDVTVWQP 356
>gi|47078235 GDNF family receptor alpha 2 preproprotein [Homo
sapiens]
Length = 464
Score = 177 bits (449), Expect = 9e-45
Identities = 88/206 (42%), Positives = 117/206 (56%), Gaps = 5/206 (2%)
Query: 20 SVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGG-CPRARCRRALRRFFARGPPA 78
S N C+DAA+AC + C++LRS Y++ C + C R +C +ALR+FF R P
Sbjct: 155 SAKSNHCLDAAKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFFDRVPSE 214
Query: 79 LTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRPRLLAFQ 138
T+ +LFC C ACAERRRQT +PSC++ P+CL+ C +CR RL F
Sbjct: 215 YTYRMLFCSCQDQACAERRRQTILPSCSYE--DKEKPNCLDLRGVCRTDHLCRSRLADFH 272
Query: 139 VSCTPAPSAPDGCLLDQGARCLRAYAGLVGTAVTPNYVDN--VSARVAPWCDCGASGNRR 196
+C + C D CL +YAG++G +TPNYVD+ V+PWC C SGN
Sbjct: 273 ANCRASYQTVTSCPADNYQACLGSYAGMIGFDMTPNYVDSSPTGIVVSPWCSCRGSGNME 332
Query: 197 EDCEAFRGLFTRNRCLDGAIQAFASG 222
E+CE F FT N CL AIQAF +G
Sbjct: 333 EECEKFLRDFTENPCLRNAIQAFGNG 358
>gi|22035694 GDNF family receptor alpha 3 preproprotein [Homo
sapiens]
Length = 400
Score = 151 bits (382), Expect = 5e-37
Identities = 86/209 (41%), Positives = 104/209 (49%), Gaps = 19/209 (9%)
Query: 26 CVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALRRFFARGPPALTHALLF 85
C+ A CT + +C RLR Y C G C R C R L FF + LL
Sbjct: 162 CLKFAMLCTLNDKCDRLRKAYGEACSGPH----CQRHVCLRQLLTFFEKAAEPHAQGLLL 217
Query: 86 CPCA--GPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRPRLLAFQVSCTP 143
CPCA C ERRR T P+CA P P+CLE C +CR RL+ FQ C P
Sbjct: 218 CPCAPNDRGCGERRRNTIAPNCALP---PVAPNCLELRRLCFSDPLCRSRLVDFQTHCHP 274
Query: 144 APSAPDGCLLDQGARCLRAYAGLVGTAVTPNYVDNVSARVAPWCDCGASGNRREDCEAFR 203
G + +RCLRAY GL+GTA+TPN+V NV+ VA C C SGN +E+CE
Sbjct: 275 MDIL--GTCATEQSRCLRAYLGLIGTAMTPNFVSNVNTSVALSCTCRGSGNLQEECEMLE 332
Query: 204 GLFTRNRCLDGAI--------QAFASGWP 224
G F+ N CL AI Q F+ WP
Sbjct: 333 GFFSHNPCLTEAIAAKMRFHSQLFSQDWP 361
>gi|148231468 GDNF family receptor alpha like [Homo sapiens]
Length = 394
Score = 63.5 bits (153), Expect = 2e-10
Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 16/196 (8%)
Query: 26 CVDAAEACTADARCQRLRSEYVAQCLGRAAQGG-CPRARCRRALRRFFARGPPALTHALL 84
C++ AEAC D C + Y+ C +A G C +C+ A+R F+ P + L
Sbjct: 131 CLEVAEACVGDVVCNAQLASYLKAC---SANGNPCDLKQCQAAIRFFYQNIPFNIAQMLA 187
Query: 85 FCPCAGP--ACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRPRLLAFQVSC- 141
FC CA C + + +CA + PP+CL + C+ +CR FQ C
Sbjct: 188 FCDCAQSDIPCQQSKEALHSKTCAVNMV--PPPTCLSVIRSCQNDELCRRHYRTFQSKCW 245
Query: 142 ---TPAPSAPDGCLLDQGARCLRAYAGLVGTAVTPNYVDNVSARVAPWCDCGASGNRRED 198
T + C+ + L A Y+D + + C C E
Sbjct: 246 QRVTRKCHEDENCISTLSKQDLTCSGSDDCKAA---YIDILGTVLQVQCTCRTITQSEES 302
Query: 199 -CEAFRGLFTRNRCLD 213
C+ F+ + R C +
Sbjct: 303 LCKIFQHMLHRKSCFN 318
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 40.8 bits (94), Expect = 0.001
Identities = 39/119 (32%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 29 AAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALRRFFARGPPALTHALLFCPC 88
A + D RC+R R A GR A G C + C A + ARG P ++ C
Sbjct: 135 APPPASRDCRCRRPRRWPRAGRRGRRA-GAC-KPSCAGAA--WSARGAPLCSYRT---SC 187
Query: 89 AGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRPRLLAFQVSCTPAPSA 147
AG +C R T P+CA P A SC C R R C A+ +C P+A
Sbjct: 188 AG-SCGARTAPTPAPTCA--SPSAAASSC------CRRRRACSSPTTAWSGACGAGPTA 237
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 33.9 bits (76), Expect = 0.15
Identities = 30/101 (29%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 53 RAAQGGCPRARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPG- 111
+ A G P + R RR PP + CAG +C PS A GPG
Sbjct: 23 QVAPPGGPXSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLATPEPARAPSIAEPGPGI 82
Query: 112 ---PAPPSCLEPLNFCERSRVCRPRLLAFQVSC-TPAPSAP 148
A P L C +R P L + C P P+AP
Sbjct: 83 PVAAAKPGVLPGGGGCTGARTENPPLSPTRGDCRVPVPAAP 123
>gi|21264602 laminin alpha 5 [Homo sapiens]
Length = 3695
Score = 33.9 bits (76), Expect = 0.15
Identities = 48/166 (28%), Positives = 57/166 (34%), Gaps = 42/166 (25%)
Query: 23 GNRCVDAAEACTA------------DARCQRLRSEYVAQCLGRAAQGGCPRARCRRALR- 69
G RC AE T D R Q L + + C AA G CR+ R
Sbjct: 455 GERCDVCAEGFTGFPSCYPTPSSSNDTREQVLPAGQIVNCDCSAA--GTQGNACRKDPRV 512
Query: 70 -RFFARGPPALTHALLFCP-CAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERS 127
R + TH L P GP C C S PG A C C R
Sbjct: 513 GRCLCKPNFQGTHCELCAPGFYGPGCQP---------CQCSSPGVADDRCDPDTGQC-RC 562
Query: 128 RV---------CRPRLLAFQV----SCTPAPSAPDGCLLDQGARCL 160
RV C P F + C+PA + P+GC D+ RCL
Sbjct: 563 RVGFEGATCDRCAPGYFHFPLCQLCGCSPAGTLPEGC--DEAGRCL 606
>gi|38348414 von Willebrand factor C domain containing 2 [Homo
sapiens]
Length = 325
Score = 33.9 bits (76), Expect = 0.15
Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 67 ALRRFFARGPPALTHALLFCPCA----GPACAERRRQTFVPSCAFSGPGPAPPSCLEPLN 122
A+ FA GP A CPC GP CA+ P C P C E N
Sbjct: 164 AIGEKFAPGPSA-------CPCLCTEEGPLCAQPECPRLHPRCIHVDTSQCCPQCKERKN 216
Query: 123 FCE 125
+CE
Sbjct: 217 YCE 219
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 33.1 bits (74), Expect = 0.26
Identities = 36/158 (22%), Positives = 48/158 (30%), Gaps = 38/158 (24%)
Query: 23 GNRCVDAAEACTAD-----ARCQRLRSEYVAQC------------LGRAAQGGCPRARCR 65
G RC + C + +C L +Y+ +C + A C CR
Sbjct: 576 GTRCESQVDECRSQPCRHGGKCLDLVDKYLCRCPSGTTGVNCEVNIDDCASNPCTFGVCR 635
Query: 66 RALRRFFARGPPALTHALL---FCPCAGPACAERRRQTFVPSCA--------FSGPGPAP 114
+ R+ P T L CA C E SC PG P
Sbjct: 636 DGINRYDCVCQPGFTGPLCNVEINECASSPCGEGG------SCVDGENGFRCLCPPGSLP 689
Query: 115 PSCLEPLNFCERS----RVCRPRLLAFQVSCTPAPSAP 148
P CL P + C +C F+ C P S P
Sbjct: 690 PLCLPPSHPCAHEPCSHGICYDAPGGFRCVCEPGWSGP 727
>gi|239749693 PREDICTED: similar to hCG1806822 [Homo sapiens]
Length = 1180
Score = 33.1 bits (74), Expect = 0.26
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 16 GSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALRRFFAR 74
G ++ G N+ A DAR +R R +V+ G AA G P R RR R R
Sbjct: 1104 GVGTAGGANKAAATRAAQARDARSERPRRAFVSGGAGAAAAAGRPERRMRRPAARIGER 1162
>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
Length = 3075
Score = 32.7 bits (73), Expect = 0.34
Identities = 39/168 (23%), Positives = 54/168 (32%), Gaps = 17/168 (10%)
Query: 27 VDAAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALRRFFARGPPALTHALLFC 86
VD +EA C + E + +CLG A C R F+ A C
Sbjct: 855 VDPSEA----GHCDSVTGECL-KCLGNT-----DGAHCERCADGFYGDAVTAKNCRACEC 904
Query: 87 PCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRPRLLAFQVSCTPAPS 146
G A +T + C + G CL + CRP +C+ A S
Sbjct: 905 HVKGSHSAVCHLETGLCDCKPNVTGQQCDQCLHGYYGLDSGHGCRP------CNCSVAGS 958
Query: 147 APDGCLLDQGARCLRAYAGLVGTAVTPNYVDNVSARVAPWCDCGASGN 194
DGC + C+ AG + P CDC + N
Sbjct: 959 VSDGCTDEGQCHCVPGVAGKRCDRCAHGFYAYQDGSCTP-CDCPHTQN 1005
>gi|157909822 pragmin [Homo sapiens]
Length = 1402
Score = 32.7 bits (73), Expect = 0.34
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 88 CAGPACAERRRQTFVPSCAFSGPGPAPPSCLEP 120
C+GPA E+R +F C GP A PSCL P
Sbjct: 294 CSGPAEQEKRGPSFPKECCSQGP-TAHPSCLGP 325
>gi|167466169 growth arrest-specific 1 [Homo sapiens]
Length = 345
Score = 32.3 bits (72), Expect = 0.44
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 8/104 (7%)
Query: 16 GSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALRRFFARG 75
G + G C +A C D+RC S Y+ C G+ G CR + A
Sbjct: 156 GGPGAGGVMGCTEARRRCDRDSRCNLALSRYLTYC-GKVFNGLRCTDECRTVIEDMLAMP 214
Query: 76 PPALTHALLFCPCAG---PACAERRRQTFVPSCAFSGPGPAPPS 116
AL L C C G P C E ++ C + G P S
Sbjct: 215 KAAL---LNDCVCDGLERPIC-ESVKENMARLCFGAELGNGPGS 254
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 32.3 bits (72), Expect = 0.44
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 87 PCAGPA-CAERRRQTFVPSCAFSGPGPAPPSCLEP------LNFCERSRVCRPRLLAFQV 139
PC+G C R C P PPSCL+P C C P LL
Sbjct: 2608 PCSGGTDCELGRVYVSADLCQKGLVPPCPPSCLDPKANRSCSGHCVEGCRCPPGLLLHDT 2667
Query: 140 SCTPAPSAPDGCLLDQ 155
C P P CL+ +
Sbjct: 2668 RCLPLSECP--CLVGE 2681
Score = 30.8 bits (68), Expect = 1.3
Identities = 24/80 (30%), Positives = 25/80 (31%), Gaps = 8/80 (10%)
Query: 75 GPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCL------EPLNFCERSR 128
GP + T PC C E C G GP P CL E FC
Sbjct: 2869 GPHSQTRDCNTQPCTAQ-CPENMLFRSAEQCHQEG-GPCPRLCLTQGPGIECTGFCAPGC 2926
Query: 129 VCRPRLLAFQVSCTPAPSAP 148
C P L SC P P
Sbjct: 2927 TCPPGLFLHNASCLPRSQCP 2946
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 31.6 bits (70), Expect = 0.76
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 16 GSASSVGGNRCVDAAEACTADAR-------CQRLRSEYVAQCLGRAAQGGCPRARCRRAL 68
GS VGG RC + +A+ C + C+ QGGCP A + +
Sbjct: 1010 GSVEQVGGERCRGPQSSGPVEAKQEDSPFQCPKEERPGGVPCMD---QGGCPLAGLSQEV 1066
Query: 69 RRFFARGPPALTHALLFCPCAGPACAERRRQTFVPS 104
+ LT + PC+ P TF+PS
Sbjct: 1067 PTMPSLPGTGLTASPKAGPCSTPTSQHGSTATFLPS 1102
>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
sapiens]
Length = 254
Score = 31.2 bits (69), Expect = 0.99
Identities = 40/148 (27%), Positives = 51/148 (34%), Gaps = 17/148 (11%)
Query: 54 AAQGGCPRARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPA 113
AA+ R A R A GPPA A+++ AGP+ A CA + PA
Sbjct: 9 AAKTSVRRPAAAPAAVRPPAAGPPAAAPAVVYPAAAGPSAAS--------LCAANPLVPA 60
Query: 114 PPSCLEPLNFCERSRVCRPRLLAFQVSCTPAPSAPDGCLLDQGARCLRAYAGLVGTAVTP 173
P + P V P A V C PA + P L A A + A T
Sbjct: 61 PAAVRPP--------VAGPPATAPAVVC-PAAAGPSAASLRAANPLAVAPAAVRRPAATL 111
Query: 174 NYVDNVSARVAPWCDCGASGNRREDCEA 201
+ A C AS + C A
Sbjct: 112 GAASPAAVAPAAVCPAAASPSAASLCAA 139
>gi|61966777 V-set and immunoglobulin domain containing 8 [Homo
sapiens]
Length = 414
Score = 31.2 bits (69), Expect = 0.99
Identities = 35/126 (27%), Positives = 46/126 (36%), Gaps = 24/126 (19%)
Query: 16 GSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQG----GCPRARCRRALRRF 71
G+ VGG C D A DA ++ GR ++ G P R+LRR
Sbjct: 306 GNGGGVGGGACGDLASEIREDAVAPGCKAS------GRGSRVTHLLGYPTQNVSRSLRRK 359
Query: 72 FARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGP--APPSCLEPLNFCERSRV 129
+A PP PC GP T +C +GP P EP + E
Sbjct: 360 YA--PP---------PCGGPEDVALAPCTAAAACE-AGPSPVYVKVKSAEPADCAEGPVQ 407
Query: 130 CRPRLL 135
C+ LL
Sbjct: 408 CKNGLL 413
>gi|169218002 PREDICTED: hypothetical protein [Homo sapiens]
Length = 218
Score = 30.4 bits (67), Expect = 1.7
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 7/101 (6%)
Query: 53 RAAQGGCPRARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGP 112
+ A G P + R RR PP + CAG +C PS A GPG
Sbjct: 16 QVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLATPEPARAPSIAEPGPG- 74
Query: 113 APPSCLEPL-----NFCERSRVCRPRLLAFQVSC-TPAPSA 147
P + ++P+ C +R P L + C P P+A
Sbjct: 75 IPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAA 115
>gi|239742701 PREDICTED: hypothetical protein XP_002342609 [Homo
sapiens]
Length = 192
Score = 30.4 bits (67), Expect = 1.7
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 86 CPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLN 122
C A A RR ++ P CA P+PPS L PLN
Sbjct: 115 CQLTDAAVATTRRHSWSPPCA-----PSPPSGLHPLN 146
>gi|169163057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 30.4 bits (67), Expect = 1.7
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 7/101 (6%)
Query: 53 RAAQGGCPRARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGP 112
+ A G P + R RR PP + CAG +C PS A GPG
Sbjct: 43 QVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLATPEPARAPSIAEPGPG- 101
Query: 113 APPSCLEPL-----NFCERSRVCRPRLLAFQVSC-TPAPSA 147
P + ++P+ C +R P L + C P P+A
Sbjct: 102 IPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAA 142
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 30.4 bits (67), Expect = 1.7
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 102 VPSCAFSGPGPAPPSCLEPLNFCERSR-VCRPRLLA--FQVSCTPAPSAPDG-CLL 153
VP C S P PAPP C + FCE + C RL V+C P+ DG C+L
Sbjct: 394 VPPCG-SVPPPAPPPCCQ---FCEALQDACWSRLGGGRLPVACASLPTQEDGYCVL 445
>gi|189083802 myosin VIIA isoform 2 [Homo sapiens]
Length = 2175
Score = 30.4 bits (67), Expect = 1.7
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 19/73 (26%)
Query: 47 VAQCLGRAAQGGCPRARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCA 106
V+ C+G A P + + LR F GPP P C ER R+TFV
Sbjct: 1195 VSLCVGCFA----PSEKFVKYLRNFIHGGPPGYA----------PYCEERLRRTFV---- 1236
Query: 107 FSGPGPAPPSCLE 119
+G PPS LE
Sbjct: 1237 -NGTRTQPPSWLE 1248
>gi|189083798 myosin VIIA isoform 1 [Homo sapiens]
Length = 2215
Score = 30.4 bits (67), Expect = 1.7
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 19/73 (26%)
Query: 47 VAQCLGRAAQGGCPRARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCA 106
V+ C+G A P + + LR F GPP P C ER R+TFV
Sbjct: 1195 VSLCVGCFA----PSEKFVKYLRNFIHGGPPGYA----------PYCEERLRRTFV---- 1236
Query: 107 FSGPGPAPPSCLE 119
+G PPS LE
Sbjct: 1237 -NGTRTQPPSWLE 1248
>gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens]
Length = 814
Score = 30.4 bits (67), Expect = 1.7
Identities = 33/123 (26%), Positives = 38/123 (30%), Gaps = 18/123 (14%)
Query: 42 LRSEYVAQCLGRAAQGGCPRARCRRALRR--FFARGPPALTHALLFCPCAGPACAERRRQ 99
L E QC A GCPR A + F G P C C + + +R
Sbjct: 648 LPGECCPQCPAAPAPAGCPRPGAAHARHQEYFSPPGDPCRR-----CLCLDGSVSCQRLP 702
Query: 100 TFVPSCAFSGPGPAPPSC----LEPLNFCERSRVCRPRLLAF-------QVSCTPAPSAP 148
CA GP PSC + F R P VSC P AP
Sbjct: 703 CPPAPCAHPRQGPCCPSCDGCLYQGKEFASGERFPSPTAACHLCLCWEGSVSCEPKACAP 762
Query: 149 DGC 151
C
Sbjct: 763 ALC 765
>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
Length = 1729
Score = 30.4 bits (67), Expect = 1.7
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 108 SGPGPAPPSCLEPLNFCERSRVCRPRLL------AFQVSCTPA--PSAPDGCLLDQGAR 158
SG GP P P ++S C +LL A Q S PA PSAP L D+G+R
Sbjct: 295 SGSGPGSPHLHPP----DKSSPCHSQLLEAQTPEASQASPCPAVTPSAPSAALPDEGSR 349
>gi|239747084 PREDICTED: hypothetical protein XP_002343912 [Homo
sapiens]
Length = 313
Score = 30.0 bits (66), Expect = 2.2
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 89 AGPACAERRRQTFVPSCAFSGPG--PAPP----SCLEPLNFCERSRVCR---PRLLAFQV 139
A P A R R VP + PG P+PP LNF R + CR LLA QV
Sbjct: 101 AEPGSARRNRPARVPDSPAARPGAAPSPPERWADFAVNLNFPSRLQPCRRTSAPLLAPQV 160
Query: 140 SCTPAPSAPDGCLLDQGARCLRAY 163
+ P +P G L G+ Y
Sbjct: 161 ARPAFPKSP-GSLRSSGSLATLTY 183
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.139 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,446,845
Number of Sequences: 37866
Number of extensions: 670449
Number of successful extensions: 2591
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2509
Number of HSP's gapped (non-prelim): 110
length of query: 269
length of database: 18,247,518
effective HSP length: 101
effective length of query: 168
effective length of database: 14,423,052
effective search space: 2423072736
effective search space used: 2423072736
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.