Guide to the Human Genome
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Name: GFRA1 Sequence: fasta or formatted (465aa) NCBI GI: 4885269
Description:

GDNF family receptor alpha 1 isoform a preproprotein

Referenced in:

Neurons

Other entries for this name:
alt prot [460aa] GDNF family receptor alpha 1 isoform b preproprotein
alt prot [460aa] GDNF family receptor alpha 1 isoform b preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         32           2
 C cysteine            6.7         31           1
 D aspartate           4.9         23           2
 E glutamate           4.9         23           2
 F phenylalanine       3.4         16           2
 G glycine             4.3         20           2
 H histidine           1.3          6           1
 I isoleucine          3.2         15           1
 K lysine              6.7         31           2
 L leucine            11.0         51           3
 M methionine          1.5          7           1
 N asparagine          6.2         29           2
 P proline             4.7         22           2
 Q glutamine           3.7         17           2
 R arginine            4.7         22           3
 S serine             10.1         47           3
 T threonine           6.5         30           4
 V valine              5.4         25           2
 W tryptophan          0.6          3           1
 Y tyrosine            3.2         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GDNF family receptor alpha 1 isoform a preproprotein ... 
GFRA1                 0.983   GDNF family receptor alpha 1 isoform b preproprotei...
GFRA1                 0.983   GDNF family receptor alpha 1 isoform b preproprotein...
GFRA2                 0.420   GDNF family receptor alpha 2 preproprotein 
GFRA3                 0.179   GDNF family receptor alpha 3 preproprotein 
GFRA4                 0.178   GDNF family receptor alpha 4 isoform a precursor [Ho...
GFRA4                 0.124   GDNF family receptor alpha 4 isoform b precursor [Ho...
LOC100133881          0.113   PREDICTED: similar to GDNF family receptor alpha 2 ...
LOC100132336          0.081   PREDICTED: similar to GDNF family receptor alpha 2 ...
GFRAL                 0.054   GDNF family receptor alpha like 
MUC6                  0.011   mucin 6, gastric 
CCBE1                 0.006   collagen and calcium binding EGF domains 1 
RYR3                  0.006   ryanodine receptor 3 
LOC729815             0.005   PREDICTED: hypothetical protein 
WIPI2                 0.005   WD repeat domain, phosphoinositide interacting 2 iso...
WIPI2                 0.005   WD repeat domain, phosphoinositide interacting 2 isof...
EYS                   0.004   eyes shut homolog isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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