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Search of human proteins with 224586884
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224586884 cold shock domain protein A isoform b [Homo
sapiens]
(303 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224586884 cold shock domain protein A isoform b [Homo sapiens] 620 e-178
gi|224586882 cold shock domain protein A isoform a [Homo sapiens] 524 e-149
gi|34098946 nuclease sensitive element binding protein 1 [Homo s... 275 5e-74
gi|156415990 Y box binding protein 2 [Homo sapiens] 224 6e-59
gi|13375938 lin-28 homolog [Homo sapiens] 66 3e-11
gi|51972214 lin-28 homolog B [Homo sapiens] 65 1e-10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 49 7e-06
gi|4758392 forkhead box D1 [Homo sapiens] 45 8e-05
gi|146134388 YLP motif containing 1 [Homo sapiens] 44 2e-04
gi|6754638 microtubule-associated protein tau isoform 2 [Homo sa... 43 4e-04
gi|8400715 microtubule-associated protein tau isoform 4 [Homo sa... 43 4e-04
gi|8400711 microtubule-associated protein tau isoform 3 [Homo sa... 43 4e-04
gi|178557736 microtubule-associated protein tau isoform 5 [Homo ... 43 4e-04
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 43 4e-04
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 43 4e-04
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 42 5e-04
gi|31543543 retinoic acid induced 17 [Homo sapiens] 42 7e-04
gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens] 42 7e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 42 9e-04
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 42 9e-04
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 42 9e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 42 9e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 42 9e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 41 0.001
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|110832843 TBP-associated factor 4 [Homo sapiens] 40 0.002
gi|167736355 mucin 4 isoform a [Homo sapiens] 40 0.002
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 40 0.003
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 40 0.003
>gi|224586884 cold shock domain protein A isoform b [Homo sapiens]
Length = 303
Score = 620 bits (1598), Expect = e-178
Identities = 303/303 (100%), Positives = 303/303 (100%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA
Sbjct: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
Query: 61 APAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ 120
APAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ
Sbjct: 61 APAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ 120
Query: 121 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG 180
TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG
Sbjct: 121 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG 180
Query: 181 YYGRRRGPPRNAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAE 240
YYGRRRGPPRNAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAE
Sbjct: 181 YYGRRRGPPRNAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAE 240
Query: 241 DKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPPTQQS 300
DKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPPTQQS
Sbjct: 241 DKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPPTQQS 300
Query: 301 SAE 303
SAE
Sbjct: 301 SAE 303
>gi|224586882 cold shock domain protein A isoform a [Homo sapiens]
Length = 372
Score = 524 bits (1350), Expect = e-149
Identities = 284/372 (76%), Positives = 286/372 (76%), Gaps = 69/372 (18%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA
Sbjct: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
Query: 61 APAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ 120
APAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ
Sbjct: 61 APAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ 120
Query: 121 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG 180
TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG
Sbjct: 121 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG 180
Query: 181 YYGRRRGPPRN-AGEIGEMKDGVPEG-------AQLQGPVH--RNPTYRPRYRSRGPP-- 228
YYGRRRGPPRN AGE E G EG Q G + R P YRP+YR R P
Sbjct: 181 YYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPY 240
Query: 229 -----------------------------------------------RPR---------- 231
RPR
Sbjct: 241 HVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPR 300
Query: 232 PAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTE 291
PAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTE
Sbjct: 301 PAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTE 360
Query: 292 NPAPPTQQSSAE 303
NPAPPTQQSSAE
Sbjct: 361 NPAPPTQQSSAE 372
>gi|34098946 nuclease sensitive element binding protein 1 [Homo
sapiens]
Length = 324
Score = 275 bits (702), Expect = 5e-74
Identities = 173/323 (53%), Positives = 189/323 (58%), Gaps = 68/323 (21%)
Query: 41 PQAAAPAPAAHVAGN--PGGDAAPAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWF 98
P AA PA A A + PG + A +G + A AG + KKV+ATKVLGTVKWF
Sbjct: 10 PPAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGGD---KKVIATKVLGTVKWF 66
Query: 99 NVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 158
NVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT
Sbjct: 67 NVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 126
Query: 159 GPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRN---------AGEIGEMKDGVPEG-AQL 208
GP GVPV+GS+YAADR YRR Y RRRGPPRN +GE E + PEG AQ
Sbjct: 127 GPGGVPVQGSKYAADRNHYRR--YPRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQ 184
Query: 209 QGPVHR-------------------NPT----------------------------YRPR 221
+ P R NP YRPR
Sbjct: 185 RRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPR 244
Query: 222 YRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGK 281
+R RGPPR R G EDKENQ + QP RR YRR +NYRRR RP N QDGK
Sbjct: 245 FR-RGPPRQRQPREDGNEEDKENQGDETQGQQPPQRR-YRRNFNYRRR-RPENPKPQDGK 301
Query: 282 EAKAGEAPTEN-PAPPTQQSSAE 303
E KA + P EN AP +Q AE
Sbjct: 302 ETKAADPPAENSSAPEAEQGGAE 324
>gi|156415990 Y box binding protein 2 [Homo sapiens]
Length = 364
Score = 224 bits (572), Expect = 6e-59
Identities = 157/357 (43%), Positives = 180/357 (50%), Gaps = 66/357 (18%)
Query: 4 AGEATTTTTTTLPQAPTEAAAAAPQDPA--PKSPVGSGAPQAAAPAPAAHVAGNPGGDAA 61
A AT T+P A PA P+ G+G AA PAA PG
Sbjct: 7 AAGATAVPAATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGS-RT 65
Query: 62 PAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 121
P TA + + A A S+ A+K VLA +VLGTVKWFNVRNGYGFINRNDTKEDVFVHQT
Sbjct: 66 PGNPATAVSGTPAPPARSQ-ADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 124
Query: 122 AIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRR-- 179
AIK+NNPRK+LRSVGDGETVEFDVVEGEKGAEA NVTGP GVPV+GSRYA +RR+ RR
Sbjct: 125 AIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFI 184
Query: 180 -------------------------------------------GYYGRR--RGP------ 188
+Y RR RGP
Sbjct: 185 PRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRPPNQQ 244
Query: 189 -PRNAGEIGEMKDGVP-EGAQLQGPVH-RNPTYRPRYRSRGPPRPRPAPAV--GEAEDKE 243
P + E K+ P EG Q QG P +RPRYR PRPR P G+ E K
Sbjct: 245 QPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKP 304
Query: 244 NQQATSGPNQPSVRRGYRRPYNYRRR---PRPPNAPSQDGKEAKAGEAPTENPAPPT 297
+Q G ++P +R RPY RRR P P AP A AP + P T
Sbjct: 305 SQGPADG-SRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAPETSAPVNSGDPTT 360
>gi|13375938 lin-28 homolog [Homo sapiens]
Length = 209
Score = 66.2 bits (160), Expect = 3e-11
Identities = 45/115 (39%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 64 ATGTAAAASLATAAGSEDAEKKVLATKVL---GTVKWFNVRNGYGFINRN-------DTK 113
A G A AA A EDA + ++L G KWFNVR G+GF++ D
Sbjct: 10 AGGCAKAAEEAPEEAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPP 69
Query: 114 EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 168
DVFVHQ+ + RS+ +GE VEF + KG E+ VTGP GV GS
Sbjct: 70 VDVFVHQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGS 120
>gi|51972214 lin-28 homolog B [Homo sapiens]
Length = 250
Score = 64.7 bits (156), Expect = 1e-10
Identities = 41/96 (42%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 80 EDAEKKVLATKVLGTVKWFNVRNGYGFI---NRN----DTKEDVFVHQTAIKKNNPRKYL 132
E AE++ + G KWFNVR G+GFI NR D DVFVHQ+ +
Sbjct: 19 EPAEEESQVLRGTGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEG----F 74
Query: 133 RSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 168
RS+ +GE VEF + KG E+ VTGP G P GS
Sbjct: 75 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 48.5 bits (114), Expect = 7e-06
Identities = 85/301 (28%), Positives = 99/301 (32%), Gaps = 48/301 (15%)
Query: 23 AAAAPQDPAPKSPVGSGAPQAA-------APAPAAHVAGNPGGDAAPAATGTAAAASLAT 75
A A + P+ P GS PQ PA AA AGNPG D P A G A +A
Sbjct: 348 AVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAG 407
Query: 76 AAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSV 135
A G A + G + G +K D K P
Sbjct: 408 APGFPGARG---PSGPQGPGGPPGPKGNSGEPGAPGSKGDTGA------KGEPGPVGVQG 458
Query: 136 GDGETVEFDVVEGEKGAEA-ANVTGPDGVPVE----GSR--YAADRRRYRRGYYGRR--- 185
G E EG++GA TG G P E GSR AD +G G R
Sbjct: 459 PPGPAGE----EGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSP 514
Query: 186 -----RGPPRNAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRP-----RPAPA 235
+G P AG GE G+P L G +P GPP P RP P
Sbjct: 515 GPAGPKGSPGEAGRPGEA--GLPGAKGLTG----SPGSPGPDGKTGPPGPAGQDGRPGPP 568
Query: 236 VGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAP 295
Q G P G R P PP A GK+ +AG PA
Sbjct: 569 --GPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAG 626
Query: 296 P 296
P
Sbjct: 627 P 627
Score = 40.4 bits (93), Expect = 0.002
Identities = 69/298 (23%), Positives = 79/298 (26%), Gaps = 53/298 (17%)
Query: 24 AAAPQDPAPKSPVGSGAPQAAAPAPA----------AHVAGNPGGDAAPAATGTAAAASL 73
A AP D P G P A AP A AG PG D P A G A
Sbjct: 775 AGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGA 834
Query: 74 ATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLR 133
AG +G V + G
Sbjct: 835 KGDAGPPGPAGPAGPPGPIGNVGAPGAKGARG---------------------------- 866
Query: 134 SVGDGETVEFDVVEGEKGAEA-ANVTGPDGVPVEGSRYAADRRRYRRGYYGR-----RRG 187
S G F G G + GP G P + R G GR G
Sbjct: 867 SAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPG 926
Query: 188 PPRNAGEIGEM-KDGV--------PEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGE 238
PP AGE G DG P+G Q V P R G P P P
Sbjct: 927 PPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG 986
Query: 239 AEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPP 296
++ GP P G P +P +DG G+ PA P
Sbjct: 987 PSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGP 1044
Score = 40.0 bits (92), Expect = 0.003
Identities = 44/165 (26%), Positives = 61/165 (36%), Gaps = 20/165 (12%)
Query: 148 GEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGR--------RRGPPRNAGEIGEMK 199
GE+G+ GP G P E R +G G + GPP AG+ G
Sbjct: 509 GERGSPGP--AGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPG 566
Query: 200 DGVPEGAQLQGPVHRNPTYRP------RYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQ 253
P GA+ Q V P + + RG P P A + + Q GP
Sbjct: 567 PPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAG 626
Query: 254 PSVRRGYRRPY---NYRRRPRPPNAPSQDGKEAKAGEAPTENPAP 295
P+ RG + P ++ P P P + GK + G P + AP
Sbjct: 627 PAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQG-VPGDLGAP 670
Score = 38.5 bits (88), Expect = 0.007
Identities = 43/160 (26%), Positives = 54/160 (33%), Gaps = 28/160 (17%)
Query: 148 GEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRR--RGPPRNAGEIGEMKDGVPEG 205
GEKG+ A+ GP G P +R G G+R RG P G GE P G
Sbjct: 932 GEKGSPGAD--GPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSG 989
Query: 206 AQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVR-------- 257
A + RGPP P P + + ++ G R
Sbjct: 990 ASGE---------------RGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKG 1034
Query: 258 -RGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPP 296
RG P P P AP G K+G+ PA P
Sbjct: 1035 DRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGP 1074
Score = 36.2 bits (82), Expect = 0.037
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 7/121 (5%)
Query: 186 RGPPRNAGEIGEMKDGVPEGAQ----LQGPVHR--NPTYRPRYRSRGPPRPRPAPAVGEA 239
+GP + GE GE D +G + LQGP +P + + GP PR P A
Sbjct: 1090 QGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGA 1149
Query: 240 EDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPPTQQ 299
K+ GP P RG P PP P G + AG + P PP ++
Sbjct: 1150 PGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPS-AGFDFSFLPQPPQEK 1208
Query: 300 S 300
+
Sbjct: 1209 A 1209
Score = 34.7 bits (78), Expect = 0.11
Identities = 44/170 (25%), Positives = 57/170 (33%), Gaps = 45/170 (26%)
Query: 148 GEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGR--RRGPPRNAGEIGEMKDGVPEG 205
G +GA A G DG + A + G G RG G G+ D P+G
Sbjct: 695 GPRGANGA--PGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKG 752
Query: 206 AQ----------LQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPS 255
A L GP+ GPP P AP + SGP+ P+
Sbjct: 753 ADGSPGKDGVRGLTGPI-------------GPPGPAGAPG---------DKGESGPSGPA 790
Query: 256 VRRGYRRPYNYRRRPRPPN---------APSQDGKEAKAGEAPTENPAPP 296
G R R P PP A Q G + + G+A + A P
Sbjct: 791 GPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGP 840
Score = 33.9 bits (76), Expect = 0.18
Identities = 65/257 (25%), Positives = 85/257 (33%), Gaps = 47/257 (18%)
Query: 30 PAPKSPVG-SGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEKKVLA 88
P P P G +G P + A G+PG D +P A G A G+ A A
Sbjct: 997 PGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPG---A 1053
Query: 89 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGD-GETVEFDVVE 147
+G R G V A PR GD GET E +
Sbjct: 1054 PGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPA-GPQGPR------GDKGETGE----Q 1102
Query: 148 GEKGAEA----ANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVP 203
G++G + + + GP G P G RGPP +AG G KDG+
Sbjct: 1103 GDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAG----PRGPPGSAGAPG--KDGL- 1155
Query: 204 EGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRP 263
L GP+ GPP PR G D P P
Sbjct: 1156 --NGLPGPI-------------GPPGPR-----GRTGDAGPVGPPGPPGPPGPPGPPSAG 1195
Query: 264 YNYRRRPRPPNAPSQDG 280
+++ P+PP + DG
Sbjct: 1196 FDFSFLPQPPQEKAHDG 1212
Score = 32.3 bits (72), Expect = 0.53
Identities = 74/302 (24%), Positives = 93/302 (30%), Gaps = 41/302 (13%)
Query: 5 GEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAA 64
GEA LP A + +P P P G P PA G PG P A
Sbjct: 524 GEAGRPGEAGLPGA--KGLTGSPGSPGPDGKTGP-------PGPAGQ-DGRPGPPGPPGA 573
Query: 65 TGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 124
G A G+ K V G K+ Q
Sbjct: 574 RGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG----------KDGEAGAQGPPG 623
Query: 125 KNNPRKYLRSVGDGETVEFDVVEGEKGAEA-ANVTGPDGVPVEGSRYAADRRRYRRGYYG 183
P G + F + G G A G GVP + R RG+ G
Sbjct: 624 PAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPG 683
Query: 184 RR--RGPPRNAGEIGEMKDGVP--EGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAV--- 236
R +GPP AG G +G P +GA+ P + +G P R A +
Sbjct: 684 ERGVQGPPGPAGPRGA--NGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGP 741
Query: 237 -GEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAP 295
G+ D + A P + VR G P P P AP G E+ PA
Sbjct: 742 KGDRGDAGPKGADGSPGKDGVR-GLTGPIG---PPGPAGAPGDKG------ESGPSGPAG 791
Query: 296 PT 297
PT
Sbjct: 792 PT 793
Score = 30.8 bits (68), Expect = 1.5
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 226 GPPRPRPAPAVGEAEDKENQQATSG-PNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAK 284
GP PR P A + Q G P +P G P R P PP DG+ K
Sbjct: 182 GPSGPRGLPGPPGAPGPQGFQGPPGEPGEP----GASGPMGPRGPPGPPGKNGDDGEAGK 237
Query: 285 AGEAPTENPAPP 296
G P P
Sbjct: 238 PGRPGERGPPGP 249
Score = 30.4 bits (67), Expect = 2.0
Identities = 43/160 (26%), Positives = 56/160 (35%), Gaps = 22/160 (13%)
Query: 148 GEKGAEAANVTGPDGV---PVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPE 204
GE+G GP G+ P E R A G R G P G+ GE P
Sbjct: 992 GERGPPGP--MGPPGLAGPPGESGREGAPGAEGSPG----RDGSPGAKGDRGETGPAGPP 1045
Query: 205 GAQ----LQGPVHRNPTYRPRYRSR-GPPRPR----PAPAVGEA--EDKENQQATSGPNQ 253
GA GPV P + R GP P P A G A + + +G
Sbjct: 1046 GAPGAPGAPGPV--GPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQG 1103
Query: 254 PSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENP 293
+G+R + P PP +P + G +G A P
Sbjct: 1104 DRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGP 1143
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 45.1 bits (105), Expect = 8e-05
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 19 PTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAG 78
P AAAAA Q A S +P AA PAP + + GG AA AA G AAA + + A
Sbjct: 374 PAAAAAAAAQAAAAAQASPSPSPVAAPPAPGS----SGGGCAAQAAVGPAAALTRSLVAA 429
Query: 79 SEDAEKKVLATKVLGTV 95
+ A V ++ LGT+
Sbjct: 430 AAAAASSVSSSAALGTL 446
Score = 33.1 bits (74), Expect = 0.31
Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 5 GEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAH-VAGNPGGDAAPA 63
G A T P AA P P P S +G P A+A A + + GG PA
Sbjct: 317 GAAAELARTAFGYRPHPLGAALP-GPLPASAAKAGGPGASALARSPFSIESIIGGSLGPA 375
Query: 64 ATGTAAAASLATAAGSEDAEKKVLATKVLGT 94
A AAAA A AA + + V A G+
Sbjct: 376 AAA-AAAAQAAAAAQASPSPSPVAAPPAPGS 405
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 43.5 bits (101), Expect = 2e-04
Identities = 40/124 (32%), Positives = 50/124 (40%), Gaps = 14/124 (11%)
Query: 179 RGYYG-RRRGPPRNAG--EIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPA 235
RG G R RGPPR AG E G ++ G R P R R RGPPR +
Sbjct: 1103 RGAAGSRERGPPRRAGSQERGPLRRA--------GSRERIPPRRAGSRERGPPRGPGSRE 1154
Query: 236 VGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAP 295
G + GP +P G + Y Y R PP AP G+E E P +
Sbjct: 1155 RGLGRSDFGRD--RGPFRPEPGDGGEKMYPY-HRDEPPRAPWNHGEERGHEEFPLDGRNA 1211
Query: 296 PTQQ 299
P ++
Sbjct: 1212 PMER 1215
Score = 37.7 bits (86), Expect = 0.013
Identities = 71/325 (21%), Positives = 112/325 (34%), Gaps = 47/325 (14%)
Query: 7 ATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGN--------PGG 58
++T +P P +A P P P P G AAP P A + + P
Sbjct: 611 SSTAPPPVMPLPPLSSATPPPGIPPPGVPQGIPPQLTAAPVPPASSSQSSQVPEKPRPAL 670
Query: 59 DAAPAATGTAAAAS----LATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTK- 113
P + G+A + L +A SE K +K F+ G G + ++
Sbjct: 671 LPTPVSFGSAPPTTYHPPLQSAGPSEQVNSKAPLSKSALPYSSFSSDQGLGESSAAPSQP 730
Query: 114 ----EDVFVHQTAIKKNNPR-KYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 168
+D+ V + + PR YL S GP GS
Sbjct: 731 ITAVKDMPVRSGGLLPDPPRSSYLES-----------------PRGPRFDGPRRFEDLGS 773
Query: 169 RYAADRRRYRRGYYGRRRGP-PRNAGEIGEMKDG----VPEGAQLQGPVHRNPTYRPRYR 223
R R + R R GP PR G E +P G Q + + + P R
Sbjct: 774 RCEGPRPKGPRFEGNRPDGPRPRYEGHPAEGTKSKWGMIPRGPASQFYITPSTSLSP--R 831
Query: 224 SRGPPRPRPAPAVG---EAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPN--APSQ 278
GP P PA G + + K + SG +P + N++ + + A +
Sbjct: 832 QSGPQWKGPKPAFGQQHQQQPKSQAEPLSGNKEPLADTSSNQQKNFKMQSAAFSIAADVK 891
Query: 279 DGKEAKAGEAPTENPAPPTQQSSAE 303
D K A++ E +++ P + +E
Sbjct: 892 DVKAAQSNENLSDSQQEPPKSEVSE 916
>gi|6754638 microtubule-associated protein tau isoform 2 [Homo
sapiens]
Length = 441
Score = 42.7 bits (99), Expect = 4e-04
Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 8/143 (5%)
Query: 152 AEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGAQLQGP 211
AE A + + E + + R + G + G G+ K P GA G
Sbjct: 103 AEEAGIGDTPSLEDEAAGHVTQARMVSKSKDGTGSDDKKAKGADGKTKIATPRGAAPPG- 161
Query: 212 VHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPR 271
+ R ++ PP P+ P+ GE ++ S P P P + R P
Sbjct: 162 -QKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGT------PGSRSRTPS 214
Query: 272 PPNAPSQDGKEAKAGEAPTENPA 294
P P+++ K+ P ++P+
Sbjct: 215 LPTPPTREPKKVAVVRTPPKSPS 237
>gi|8400715 microtubule-associated protein tau isoform 4 [Homo
sapiens]
Length = 352
Score = 42.7 bits (99), Expect = 4e-04
Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 8/143 (5%)
Query: 152 AEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGAQLQGP 211
AE A + + E + + R + G + G G+ K P GA G
Sbjct: 45 AEEAGIGDTPSLEDEAAGHVTQARMVSKSKDGTGSDDKKAKGADGKTKIATPRGAAPPG- 103
Query: 212 VHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPR 271
+ R ++ PP P+ P+ GE ++ S P P P + R P
Sbjct: 104 -QKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGT------PGSRSRTPS 156
Query: 272 PPNAPSQDGKEAKAGEAPTENPA 294
P P+++ K+ P ++P+
Sbjct: 157 LPTPPTREPKKVAVVRTPPKSPS 179
>gi|8400711 microtubule-associated protein tau isoform 3 [Homo
sapiens]
Length = 383
Score = 42.7 bits (99), Expect = 4e-04
Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 8/143 (5%)
Query: 152 AEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGAQLQGP 211
AE A + + E + + R + G + G G+ K P GA G
Sbjct: 45 AEEAGIGDTPSLEDEAAGHVTQARMVSKSKDGTGSDDKKAKGADGKTKIATPRGAAPPG- 103
Query: 212 VHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPR 271
+ R ++ PP P+ P+ GE ++ S P P P + R P
Sbjct: 104 -QKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGT------PGSRSRTPS 156
Query: 272 PPNAPSQDGKEAKAGEAPTENPA 294
P P+++ K+ P ++P+
Sbjct: 157 LPTPPTREPKKVAVVRTPPKSPS 179
>gi|178557736 microtubule-associated protein tau isoform 5 [Homo
sapiens]
Length = 412
Score = 42.7 bits (99), Expect = 4e-04
Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 8/143 (5%)
Query: 152 AEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGAQLQGP 211
AE A + + E + + R + G + G G+ K P GA G
Sbjct: 74 AEEAGIGDTPSLEDEAAGHVTQARMVSKSKDGTGSDDKKAKGADGKTKIATPRGAAPPG- 132
Query: 212 VHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPR 271
+ R ++ PP P+ P+ GE ++ S P P P + R P
Sbjct: 133 -QKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGT------PGSRSRTPS 185
Query: 272 PPNAPSQDGKEAKAGEAPTENPA 294
P P+++ K+ P ++P+
Sbjct: 186 LPTPPTREPKKVAVVRTPPKSPS 208
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 42.7 bits (99), Expect = 4e-04
Identities = 34/123 (27%), Positives = 44/123 (35%), Gaps = 10/123 (8%)
Query: 183 GRRRGPPRNAGEI--GEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPR-------PRPA 233
G+ +GPP G G G P+G QG R+P P PP+ P P
Sbjct: 55 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPP 114
Query: 234 PAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENP 293
P + + GP P +G + R PR P Q G + G P P
Sbjct: 115 PGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ-GPPPQGGNQPQGPP 173
Query: 294 APP 296
PP
Sbjct: 174 PPP 176
Score = 40.4 bits (93), Expect = 0.002
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 160 PDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGAQLQGPVHRNPTYR 219
P G P +G D+ R R G+ +GPP G + + P + QGP +
Sbjct: 138 PQGPPPQG-----DKSRSPRSPPGKPQGPPPQGGN--QPQGPPPPPGKPQGPPPQGGK-- 188
Query: 220 PRYRSRGPPRP-RPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRP-RPPNAPS 277
+ +GPP P +P + + + Q+ G Q +G +P P +P P
Sbjct: 189 ---KPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 245
Query: 278 QDGKEAKAGEAPTENPAPPTQQSS 301
Q G + + P + PP Q S
Sbjct: 246 QGGNKPQGPPPPGKPQGPPAQGGS 269
Score = 29.3 bits (64), Expect = 4.5
Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 227 PPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAG 286
P P P P + + GP P +G + R PR P Q G + G
Sbjct: 47 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ-GPPPQGG 105
Query: 287 EAPTENPAPP 296
P P PP
Sbjct: 106 NQPQGPPPPP 115
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 42.7 bits (99), Expect = 4e-04
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 12/120 (10%)
Query: 183 GRRRGPPRNAGEI--GEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPP----RPRPAPAV 236
G+ +GPP G G G P+G QG R+P P + +GPP +P+ PA
Sbjct: 55 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPR-SPPGKPQGPPPQGGKPQGPPAQ 113
Query: 237 GEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPP 296
G ++ + + P P + G N + P PP + +A P P PP
Sbjct: 114 GGSKSQSARSPPGKPQGPPQQEG-----NNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP 168
Score = 31.6 bits (70), Expect = 0.91
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 18/109 (16%)
Query: 201 GVPEGAQLQGPVHRNPTYRPRYRSRGPP-----RPRPAPAVGEAEDKENQQATSGPNQPS 255
G P+G QG P + +GPP +P+ P G+ + P Q
Sbjct: 34 GNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP--------PPQGD 85
Query: 256 VRRGYRRPYNYRRRP-----RPPNAPSQDGKEAKAGEAPTENPAPPTQQ 299
R R P + P +P P+Q G ++++ +P P P QQ
Sbjct: 86 KSRSPRSPPGKPQGPPPQGGKPQGPPAQGGSKSQSARSPPGKPQGPPQQ 134
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 42.4 bits (98), Expect = 5e-04
Identities = 36/146 (24%), Positives = 54/146 (36%), Gaps = 13/146 (8%)
Query: 160 PDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGAQLQGPVHRNPTYR 219
P G P +G ++ R R G+ +GPP G + + P + QGP +
Sbjct: 159 PQGPPPQGD----NKSRSSRSPPGKPQGPPPQGGN--QPQGPPPPPGKPQGPPPQGGN-- 210
Query: 220 PRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPS--VRRGYRRPYNYRRRPRPPNAPS 277
+ +GPP P D ++Q A S P +P +G +P P P P
Sbjct: 211 ---KPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 267
Query: 278 QDGKEAKAGEAPTENPAPPTQQSSAE 303
G G P P P Q ++
Sbjct: 268 PQGGNKPQGPPPPGKPQGPPPQGGSK 293
Score = 38.1 bits (87), Expect = 0.010
Identities = 34/126 (26%), Positives = 46/126 (36%), Gaps = 15/126 (11%)
Query: 183 GRRRGPPRNAGEI--GEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPP--------RPRP 232
G+ +GPP G G G P+G QG R+P P + +GPP P P
Sbjct: 76 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPR-SPPGKPQGPPPQGGNQPQGPPP 134
Query: 233 APAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRP--RPPNAPSQDGKEAKAGEAPT 290
P + + GP P +G + + R PP P G + G P
Sbjct: 135 PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKP--QGPPPQGGNQPQ 192
Query: 291 ENPAPP 296
P PP
Sbjct: 193 GPPPPP 198
Score = 37.4 bits (85), Expect = 0.017
Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 5/117 (4%)
Query: 183 GRRRGPPRNAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDK 242
G+ +GPP G G P + QGP + + SR PP P
Sbjct: 261 GKPQGPPPQGGN---KPQGPPPPGKPQGPPPQGGS--KSRSSRSPPGKPQGPPPQGGNQP 315
Query: 243 ENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPPTQQ 299
+ G Q +G +P +P P Q G ++++ +P P P QQ
Sbjct: 316 QGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQ 372
Score = 37.0 bits (84), Expect = 0.022
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 24/150 (16%)
Query: 160 PDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGAQLQGPVHRNPTYR 219
P G P +G ++ + R G+ +GPP G + + P + QGP +
Sbjct: 221 PQGPPPQGD----NKSQSARSPPGKPQGPPPQGGN--QPQGPPPPPGKPQGPPPQGGN-- 272
Query: 220 PRYRSRGPP---RPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPP--- 273
+ +GPP +P+ P G ++ + ++ P P + G N + P PP
Sbjct: 273 ---KPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGG-----NQPQGPPPPPGK 324
Query: 274 --NAPSQDGKEAKAGEAPTENPAPPTQQSS 301
P Q G + + P + PP Q S
Sbjct: 325 PQGPPPQGGNKPQGPPPPGKPQGPPPQGGS 354
Score = 34.3 bits (77), Expect = 0.14
Identities = 28/104 (26%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 201 GVPEGAQLQGPVHRNPTYRPRYRSRGPPR--------PRPAPAVGEAEDKENQQATSGPN 252
G P+GA QG P + +GPP P P P + + GP
Sbjct: 34 GNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 93
Query: 253 QPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPP 296
P +G + R PR P Q G + G P P PP
Sbjct: 94 PPGKPQGPPPQGDKSRSPRSPPGKPQ-GPPPQGGNQPQGPPPPP 136
Score = 28.9 bits (63), Expect = 5.9
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 160 PDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGAQLQGPVHRNPTYR 219
P G P +G + R R G+ +GPP+ + G G P A G + P
Sbjct: 345 PQGPPPQGG----SKSRSARSPPGKPQGPPQ---QEGNNPQGPPPPA---GGNPQQPQAP 394
Query: 220 PRYRSRGPPRP 230
P + +GPPRP
Sbjct: 395 PAGQPQGPPRP 405
>gi|31543543 retinoic acid induced 17 [Homo sapiens]
Length = 1067
Score = 42.0 bits (97), Expect = 7e-04
Identities = 57/243 (23%), Positives = 77/243 (31%), Gaps = 32/243 (13%)
Query: 16 PQAPTEAAAAAPQDPAPKSPVGSGAP-QAAAPAPAAHVAGNPGGDAAPAATGTAAAASLA 74
P P A P +P G G P PA A A AA TA A + A
Sbjct: 242 PNYPGSGGFGASYPGGPNAPAGMGIPPHTRPPADFTQPAAAAAAAAVAAAAATATATATA 301
Query: 75 TAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRS 134
T A ++ + K + N YG + F++Q + P S
Sbjct: 302 TVAALQETQNKDI--------------NQYGPMGPTQAYNSQFMNQPGPR--GPASMGGS 345
Query: 135 VGDGETVEFDVVEGEKGAEAA-NVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAG 193
+ G G N P G+ S + +R + Y R
Sbjct: 346 MNPASMAAGMTPSGMSGPPMGMNQPRPPGI----SPFGTHGQRMPQQTYPGPRPQSLPIQ 401
Query: 194 EIGEMKDGVPE-GAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPN 252
I G P G Q GP + PT +Y + PPRP +P N P+
Sbjct: 402 NIKRPYPGEPNYGNQQYGPNSQFPTQPGQYPAPNPPRPLTSP---------NYPGQRMPS 452
Query: 253 QPS 255
QPS
Sbjct: 453 QPS 455
>gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens]
Length = 1292
Score = 42.0 bits (97), Expect = 7e-04
Identities = 26/52 (50%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 16 PQAPTEAAAAAPQDPAPKSPVGSGAPQAA---APAPAAHVAGNPGGDAAPAA 64
P APT AA A Q PAP +P AP AA APAPA+ A P D+ P A
Sbjct: 4 PAAPTPAAPAPAQAPAP-APEAVPAPAAAPVPAPAPASDSASGPSSDSGPEA 54
Score = 29.3 bits (64), Expect = 4.5
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 29 DPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPA-ATGTAAAASLATAAGSEDAEKKVL 87
DPA +P QA APAP A A P PA A + +A+ ++ +G E +++L
Sbjct: 3 DPAAPTPAAPAPAQAPAPAPEAVPA--PAAAPVPAPAPASDSASGPSSDSGPEAGSQRLL 60
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 41.6 bits (96), Expect = 9e-04
Identities = 73/283 (25%), Positives = 99/283 (34%), Gaps = 30/283 (10%)
Query: 16 PQAPTEAAAAAPQD-PAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLA 74
P P + PQ P P+ P+G P P +AG PG D P G +
Sbjct: 699 PGPPGQQGNPGPQGLPGPQGPIGP--PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEK 756
Query: 75 TAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFV-HQTAIKKNNPRKYLR 133
A G + + G VR G ++ + ED F + + R +
Sbjct: 757 GALGPPGPQGPIGYPGPRGVKGADGVRGLKG--SKGEKGEDGFPGFKGDMGLKGDRGEVG 814
Query: 134 SVGD-GETVEFDVVEGEKG-AEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRN 191
+G GE D EG KG A GP G E + GY G R+GP +
Sbjct: 815 QIGPRGE----DGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPG---LPGYPG-RQGPKGS 866
Query: 192 AGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYR-SRGPPRPRPAPAVGEAEDKENQQATSG 250
G G +GA R +P R RGP PR + K + TSG
Sbjct: 867 TGFPGFPGANGEKGA-------RGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSG 919
Query: 251 ----PNQPSVR--RGYRRPYNYRRRPRPPNAPSQDGKEAKAGE 287
P P R +G + P + PP P +DG G+
Sbjct: 920 GDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQ 962
Score = 38.1 bits (87), Expect = 0.010
Identities = 44/145 (30%), Positives = 56/145 (38%), Gaps = 10/145 (6%)
Query: 148 GEKGAE-AANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGA 206
GE+G AA G G P D RG+ G R G P G G P+G
Sbjct: 1006 GEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGER-GLPGAQGAPGLKGGEGPQGP 1064
Query: 207 QLQGPVHRNPTYRPRYRSRGP----PRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRR 262
GPV +P R + GP RP P G A +K GP P+ R G +
Sbjct: 1065 P--GPVG-SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK-GAPGEKGPQGPAGRDGVQG 1120
Query: 263 PYNYRRRPRPPNAPSQDGKEAKAGE 287
P P +P +DG + + GE
Sbjct: 1121 PVGLPGPAGPAGSPGEDGDKGEIGE 1145
Score = 38.1 bits (87), Expect = 0.010
Identities = 49/169 (28%), Positives = 58/169 (34%), Gaps = 20/169 (11%)
Query: 148 GEKGAEAAN-VTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAG------EIGEMKD 200
G +G + N GP G P + G G GPP AG E GE +
Sbjct: 1237 GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNP-GPPGEAGVGGPKGERGEKGE 1295
Query: 201 GVPEGAQ----LQGPV-----HRNPTYRPRYRSRGPP-RPRPAPAVGEAEDK--ENQQAT 248
P GA +GP NP GPP P PA G DK +
Sbjct: 1296 AGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQ 1355
Query: 249 SGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPPT 297
GP PS G P R P A + G++ GEA E P T
Sbjct: 1356 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1404
Score = 33.1 bits (74), Expect = 0.31
Identities = 45/161 (27%), Positives = 55/161 (34%), Gaps = 15/161 (9%)
Query: 143 FDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGV 202
F GEKGA V G G + R RG G+ GP +G G+ G
Sbjct: 872 FPGANGEKGARG--VAGKPGPRGQRGPTGPRGSRGARGPTGKP-GPKGTSG--GDGPPGP 926
Query: 203 PEGAQLQGPVHRNPTYRPRYRSR-GPPRPRPAPAVGEAEDKENQQATSGPNQPSV----- 256
P QGP + P P + GPP P + Q +GP P
Sbjct: 927 PGERGPQGP--QGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQ 984
Query: 257 -RRGYRRPYNYRRRPRPPNAPSQDGKEAKAG-EAPTENPAP 295
G P R P PP P + G AG E +P P
Sbjct: 985 GPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP 1025
Score = 30.8 bits (68), Expect = 1.5
Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 5/110 (4%)
Query: 186 RGPPRNAGEIGEMKDGVPEGAQ-LQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKEN 244
+G P AG+ G D P+G GP R RG P + AP + E +
Sbjct: 1008 QGLPGAAGKEGAKGDPGPQGISGKDGPAG----LRGFPGERGLPGAQGAPGLKGGEGPQG 1063
Query: 245 QQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPA 294
G G P RP P P G++ GE + PA
Sbjct: 1064 PPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1113
Score = 29.3 bits (64), Expect = 4.5
Identities = 38/150 (25%), Positives = 49/150 (32%), Gaps = 14/150 (9%)
Query: 148 GEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEM-KDGVPEGA 206
GE+G + GP G P + D RG G GP G G G P A
Sbjct: 628 GERGPQ-----GPPGPPGDDGMRGEDGEIGPRGLPGEA-GPRGLLGPRGTPGAPGQPGMA 681
Query: 207 QLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNY 266
+ GP P+ GPP + P + GP P +G +
Sbjct: 682 GVDGPPGPKGNMGPQGEP-GPPGQQGNPG------PQGLPGPQGPIGPPGEKGPQGKPGL 734
Query: 267 RRRPRPPNAPSQDGKEAKAGEAPTENPAPP 296
P P GKE ++GE P P
Sbjct: 735 AGLPGADGPPGHPGKEGQSGEKGALGPPGP 764
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 41.6 bits (96), Expect = 9e-04
Identities = 73/283 (25%), Positives = 99/283 (34%), Gaps = 30/283 (10%)
Query: 16 PQAPTEAAAAAPQD-PAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLA 74
P P + PQ P P+ P+G P P +AG PG D P G +
Sbjct: 648 PGPPGQQGNPGPQGLPGPQGPIGP--PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEK 705
Query: 75 TAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFV-HQTAIKKNNPRKYLR 133
A G + + G VR G ++ + ED F + + R +
Sbjct: 706 GALGPPGPQGPIGYPGPRGVKGADGVRGLKG--SKGEKGEDGFPGFKGDMGLKGDRGEVG 763
Query: 134 SVGD-GETVEFDVVEGEKG-AEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRN 191
+G GE D EG KG A GP G E + GY G R+GP +
Sbjct: 764 QIGPRGE----DGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPG---LPGYPG-RQGPKGS 815
Query: 192 AGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYR-SRGPPRPRPAPAVGEAEDKENQQATSG 250
G G +GA R +P R RGP PR + K + TSG
Sbjct: 816 TGFPGFPGANGEKGA-------RGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSG 868
Query: 251 ----PNQPSVR--RGYRRPYNYRRRPRPPNAPSQDGKEAKAGE 287
P P R +G + P + PP P +DG G+
Sbjct: 869 GDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQ 911
Score = 38.1 bits (87), Expect = 0.010
Identities = 44/145 (30%), Positives = 56/145 (38%), Gaps = 10/145 (6%)
Query: 148 GEKGAE-AANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGA 206
GE+G AA G G P D RG+ G R G P G G P+G
Sbjct: 955 GEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGER-GLPGAQGAPGLKGGEGPQGP 1013
Query: 207 QLQGPVHRNPTYRPRYRSRGP----PRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRR 262
GPV +P R + GP RP P G A +K GP P+ R G +
Sbjct: 1014 P--GPVG-SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK-GAPGEKGPQGPAGRDGVQG 1069
Query: 263 PYNYRRRPRPPNAPSQDGKEAKAGE 287
P P +P +DG + + GE
Sbjct: 1070 PVGLPGPAGPAGSPGEDGDKGEIGE 1094
Score = 38.1 bits (87), Expect = 0.010
Identities = 49/169 (28%), Positives = 58/169 (34%), Gaps = 20/169 (11%)
Query: 148 GEKGAEAAN-VTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAG------EIGEMKD 200
G +G + N GP G P + G G GPP AG E GE +
Sbjct: 1186 GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNP-GPPGEAGVGGPKGERGEKGE 1244
Query: 201 GVPEGAQ----LQGPV-----HRNPTYRPRYRSRGPP-RPRPAPAVGEAEDK--ENQQAT 248
P GA +GP NP GPP P PA G DK +
Sbjct: 1245 AGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQ 1304
Query: 249 SGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPPT 297
GP PS G P R P A + G++ GEA E P T
Sbjct: 1305 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1353
Score = 33.1 bits (74), Expect = 0.31
Identities = 45/161 (27%), Positives = 55/161 (34%), Gaps = 15/161 (9%)
Query: 143 FDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGV 202
F GEKGA V G G + R RG G+ GP +G G+ G
Sbjct: 821 FPGANGEKGARG--VAGKPGPRGQRGPTGPRGSRGARGPTGKP-GPKGTSG--GDGPPGP 875
Query: 203 PEGAQLQGPVHRNPTYRPRYRSR-GPPRPRPAPAVGEAEDKENQQATSGPNQPSV----- 256
P QGP + P P + GPP P + Q +GP P
Sbjct: 876 PGERGPQGP--QGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQ 933
Query: 257 -RRGYRRPYNYRRRPRPPNAPSQDGKEAKAG-EAPTENPAP 295
G P R P PP P + G AG E +P P
Sbjct: 934 GPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP 974
Score = 30.8 bits (68), Expect = 1.5
Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 5/110 (4%)
Query: 186 RGPPRNAGEIGEMKDGVPEGAQ-LQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKEN 244
+G P AG+ G D P+G GP R RG P + AP + E +
Sbjct: 957 QGLPGAAGKEGAKGDPGPQGISGKDGPAG----LRGFPGERGLPGAQGAPGLKGGEGPQG 1012
Query: 245 QQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPA 294
G G P RP P P G++ GE + PA
Sbjct: 1013 PPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1062
Score = 29.3 bits (64), Expect = 4.5
Identities = 38/150 (25%), Positives = 49/150 (32%), Gaps = 14/150 (9%)
Query: 148 GEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEM-KDGVPEGA 206
GE+G + GP G P + D RG G GP G G G P A
Sbjct: 577 GERGPQ-----GPPGPPGDDGMRGEDGEIGPRGLPGEA-GPRGLLGPRGTPGAPGQPGMA 630
Query: 207 QLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNY 266
+ GP P+ GPP + P + GP P +G +
Sbjct: 631 GVDGPPGPKGNMGPQGEP-GPPGQQGNPG------PQGLPGPQGPIGPPGEKGPQGKPGL 683
Query: 267 RRRPRPPNAPSQDGKEAKAGEAPTENPAPP 296
P P GKE ++GE P P
Sbjct: 684 AGLPGADGPPGHPGKEGQSGEKGALGPPGP 713
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 41.6 bits (96), Expect = 9e-04
Identities = 73/283 (25%), Positives = 99/283 (34%), Gaps = 30/283 (10%)
Query: 16 PQAPTEAAAAAPQD-PAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLA 74
P P + PQ P P+ P+G P P +AG PG D P G +
Sbjct: 687 PGPPGQQGNPGPQGLPGPQGPIGP--PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEK 744
Query: 75 TAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFV-HQTAIKKNNPRKYLR 133
A G + + G VR G ++ + ED F + + R +
Sbjct: 745 GALGPPGPQGPIGYPGPRGVKGADGVRGLKG--SKGEKGEDGFPGFKGDMGLKGDRGEVG 802
Query: 134 SVGD-GETVEFDVVEGEKG-AEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRN 191
+G GE D EG KG A GP G E + GY G R+GP +
Sbjct: 803 QIGPRGE----DGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPG---LPGYPG-RQGPKGS 854
Query: 192 AGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYR-SRGPPRPRPAPAVGEAEDKENQQATSG 250
G G +GA R +P R RGP PR + K + TSG
Sbjct: 855 TGFPGFPGANGEKGA-------RGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSG 907
Query: 251 ----PNQPSVR--RGYRRPYNYRRRPRPPNAPSQDGKEAKAGE 287
P P R +G + P + PP P +DG G+
Sbjct: 908 GDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQ 950
Score = 38.1 bits (87), Expect = 0.010
Identities = 44/145 (30%), Positives = 56/145 (38%), Gaps = 10/145 (6%)
Query: 148 GEKGAE-AANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGA 206
GE+G AA G G P D RG+ G R G P G G P+G
Sbjct: 994 GEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGER-GLPGAQGAPGLKGGEGPQGP 1052
Query: 207 QLQGPVHRNPTYRPRYRSRGP----PRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRR 262
GPV +P R + GP RP P G A +K GP P+ R G +
Sbjct: 1053 P--GPVG-SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEK-GAPGEKGPQGPAGRDGVQG 1108
Query: 263 PYNYRRRPRPPNAPSQDGKEAKAGE 287
P P +P +DG + + GE
Sbjct: 1109 PVGLPGPAGPAGSPGEDGDKGEIGE 1133
Score = 38.1 bits (87), Expect = 0.010
Identities = 49/169 (28%), Positives = 58/169 (34%), Gaps = 20/169 (11%)
Query: 148 GEKGAEAAN-VTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAG------EIGEMKD 200
G +G + N GP G P + G G GPP AG E GE +
Sbjct: 1225 GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNP-GPPGEAGVGGPKGERGEKGE 1283
Query: 201 GVPEGAQ----LQGPV-----HRNPTYRPRYRSRGPP-RPRPAPAVGEAEDK--ENQQAT 248
P GA +GP NP GPP P PA G DK +
Sbjct: 1284 AGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQ 1343
Query: 249 SGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPPT 297
GP PS G P R P A + G++ GEA E P T
Sbjct: 1344 PGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1392
Score = 33.1 bits (74), Expect = 0.31
Identities = 45/161 (27%), Positives = 55/161 (34%), Gaps = 15/161 (9%)
Query: 143 FDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGV 202
F GEKGA V G G + R RG G+ GP +G G+ G
Sbjct: 860 FPGANGEKGARG--VAGKPGPRGQRGPTGPRGSRGARGPTGKP-GPKGTSG--GDGPPGP 914
Query: 203 PEGAQLQGPVHRNPTYRPRYRSR-GPPRPRPAPAVGEAEDKENQQATSGPNQPSV----- 256
P QGP + P P + GPP P + Q +GP P
Sbjct: 915 PGERGPQGP--QGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQ 972
Query: 257 -RRGYRRPYNYRRRPRPPNAPSQDGKEAKAG-EAPTENPAP 295
G P R P PP P + G AG E +P P
Sbjct: 973 GPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGP 1013
Score = 30.8 bits (68), Expect = 1.5
Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 5/110 (4%)
Query: 186 RGPPRNAGEIGEMKDGVPEGAQ-LQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKEN 244
+G P AG+ G D P+G GP R RG P + AP + E +
Sbjct: 996 QGLPGAAGKEGAKGDPGPQGISGKDGPAG----LRGFPGERGLPGAQGAPGLKGGEGPQG 1051
Query: 245 QQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPA 294
G G P RP P P G++ GE + PA
Sbjct: 1052 PPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1101
Score = 29.3 bits (64), Expect = 4.5
Identities = 38/150 (25%), Positives = 49/150 (32%), Gaps = 14/150 (9%)
Query: 148 GEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEM-KDGVPEGA 206
GE+G + GP G P + D RG G GP G G G P A
Sbjct: 616 GERGPQ-----GPPGPPGDDGMRGEDGEIGPRGLPGEA-GPRGLLGPRGTPGAPGQPGMA 669
Query: 207 QLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNY 266
+ GP P+ GPP + P + GP P +G +
Sbjct: 670 GVDGPPGPKGNMGPQGEP-GPPGQQGNPG------PQGLPGPQGPIGPPGEKGPQGKPGL 722
Query: 267 RRRPRPPNAPSQDGKEAKAGEAPTENPAPP 296
P P GKE ++GE P P
Sbjct: 723 AGLPGADGPPGHPGKEGQSGEKGALGPPGP 752
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 41.6 bits (96), Expect = 9e-04
Identities = 53/182 (29%), Positives = 62/182 (34%), Gaps = 40/182 (21%)
Query: 138 GETVEFDVVEGEKGAEA----ANVTGPDGVPVEGSRYAADRRRYRRGYYGR--RRGPPRN 191
GE + + G KG A GP G + A R R G G GPP
Sbjct: 107 GEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGP 166
Query: 192 AGEIG----------EMKDGVPE---GAQL---QGPVHRNPTYRPRYRSRGPPRPRPAPA 235
G G +M G E GAQL QGP+ GP PR P
Sbjct: 167 PGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPM-------------GPMGPRGPPG 213
Query: 236 VGEAEDKENQQATSG-PNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPA 294
A + Q G P +P G P R P PP P DG+ K G+A P
Sbjct: 214 PAGAPGPQGFQGNPGEPGEP----GVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPP 269
Query: 295 PP 296
P
Sbjct: 270 GP 271
Score = 38.5 bits (88), Expect = 0.007
Identities = 87/349 (24%), Positives = 112/349 (32%), Gaps = 93/349 (26%)
Query: 16 PQAPTEAAAAAPQDPAPKSPVGSGAPQA-----AAPAPAAHVAGNPGGDAAPAATGTAAA 70
P AP A P + P G+ P+ +P PA +GNPG D P A G+A A
Sbjct: 368 PGAPGAKGEAGPT--GARGPEGAQGPRGEPGTPGSPGPAG-ASGNPGTDGIPGAKGSAGA 424
Query: 71 ASLATA---AGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNN 127
+A A G AT LG GF K +
Sbjct: 425 PGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEP-------GPAG 477
Query: 128 PRKYLRSVGDGETVEFDVVEGEKGAEA-ANVTGPDGVPVEGSRYAADRRRY--RRGYYGR 184
P+ G+ EG++GA GP G P G R A R + + G G
Sbjct: 478 PQGAPGPAGE---------EGKRGARGEPGGVGPIGPP--GERGAPGNRGFPGQDGLAGP 526
Query: 185 R-----RGPPRNAGEIGEMKD----------------GVPEGAQLQGPVHRNPTYRPRYR 223
+ RGP AG G D G P A QG V P+ P
Sbjct: 527 KGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKV--GPSGAPGED 584
Query: 224 SR-GPPRPR------------------------------PAPAVGEAEDKENQQATSGPN 252
R GPP P+ AP + K+ + +GP
Sbjct: 585 GRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPP 644
Query: 253 QPSVRRGYR------RPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAP 295
P+ G R P ++ P PP P + GK G P E AP
Sbjct: 645 GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQG-VPGEAGAP 692
Score = 37.7 bits (86), Expect = 0.013
Identities = 81/347 (23%), Positives = 106/347 (30%), Gaps = 87/347 (25%)
Query: 14 TLPQAPTEAAAAAPQ--DPAPKSPVGS----GAP----QAAAPAPAAHVAGNPGGDAAPA 63
T P P A A + + P P GS GAP + P PA AG PG D P
Sbjct: 788 TGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGF-AGPPGADGQPG 846
Query: 64 ATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAI 123
A G A AG+ + A G T +
Sbjct: 847 AKGEQGEAGQKGDAGAPGPQGPSGAPGPQGP--------------------------TGV 880
Query: 124 KKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT-GPDGVPVEGSRYAADRRRYRRGYY 182
P+ + G F G G +N GP G P + R G
Sbjct: 881 --TGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPP 938
Query: 183 GRR-----RGPPRNAGEIGEMKDGVPEGAQ----------------LQG-------PVHR 214
GR +GP GE GE D P GA+ L G P
Sbjct: 939 GRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLP 998
Query: 215 NPTYRPRYRS-------RGPPRPRPAPAVGEAEDKENQQATSGPNQPSVR---------R 258
P+ P + RGPP P P + + ++ + G + P R R
Sbjct: 999 GPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDR 1058
Query: 259 GYRRPYNYRRRPRPPNAP---SQDGKEAKAGEAPTENPAPPTQQSSA 302
G P PP +P GK+ GEA + P P+ + A
Sbjct: 1059 GETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGA 1105
Score = 33.5 bits (75), Expect = 0.24
Identities = 38/159 (23%), Positives = 50/159 (31%), Gaps = 18/159 (11%)
Query: 148 GEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGR--RRGPPRNAGEIGEM-KDGVPE 204
GE G E + G DG P R G G GPP + G G K G
Sbjct: 1032 GEPGREGS--PGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRG 1089
Query: 205 GAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPY 264
A QGP+ GP P A + + + +G +G+R
Sbjct: 1090 EAGAQGPM-------------GPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFT 1136
Query: 265 NYRRRPRPPNAPSQDGKEAKAGEAPTENPAPPTQQSSAE 303
+ P PP G AG + P P S +
Sbjct: 1137 GLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKD 1175
Score = 32.3 bits (72), Expect = 0.53
Identities = 32/118 (27%), Positives = 39/118 (33%), Gaps = 14/118 (11%)
Query: 186 RGPPRNAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQ 245
RGPP AG G P+G Q P RGPP P P K +
Sbjct: 209 RGPPGPAGAPG------PQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK 262
Query: 246 QATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGE--------APTENPAP 295
GP P RG+ P DG + +AG +P EN +P
Sbjct: 263 AGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSP 320
Score = 32.3 bits (72), Expect = 0.53
Identities = 39/152 (25%), Positives = 46/152 (30%), Gaps = 29/152 (19%)
Query: 159 GPDGVPVEGSRYAADRRRYRRGYYGRRR--GPPRNAGEIGEMKDGVPEGAQLQGPVHRNP 216
GP G E + RG+ G + GPP +G+ G P G
Sbjct: 1113 GPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSG----------- 1161
Query: 217 TYRPRYRSRGPPRPRPAPAVGEAEDKENQ-QATSGPNQPSVRRGYRRPYNYRRRPRPPNA 275
PR P P +D N GP P R G P P PP
Sbjct: 1162 -----------PRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGP 1210
Query: 276 PSQDG----KEAKAGEAPTENPAPPTQQSSAE 303
P G A AG P E P Q A+
Sbjct: 1211 PGPPGPGIDMSAFAGLGPREKGPDPLQYMRAD 1242
Score = 28.9 bits (63), Expect = 5.9
Identities = 47/186 (25%), Positives = 56/186 (30%), Gaps = 41/186 (22%)
Query: 148 GEKGAEAA-------NVTGPDGVPVEGSRYAADRR---------RYRRGYYGRR--RGPP 189
GEKG E A +TGP G P RG G R GPP
Sbjct: 771 GEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP 830
Query: 190 RNAGEIGEM-KDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQAT 248
AG G DG P QG + + + GP P AP +
Sbjct: 831 GPAGFAGPPGADGQPGAKGEQGEAGQ----KGDAGAPGPQGPSGAPGPQGPTGVTGPKGA 886
Query: 249 SGPNQPSVRRGYRR------PYNYRRRPRPPNAPSQDGKE------------AKAGEAPT 290
G P G+ P P PP P GK+ +AGE
Sbjct: 887 RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGL 946
Query: 291 ENPAPP 296
+ PA P
Sbjct: 947 QGPAGP 952
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 41.6 bits (96), Expect = 9e-04
Identities = 53/182 (29%), Positives = 62/182 (34%), Gaps = 40/182 (21%)
Query: 138 GETVEFDVVEGEKGAEA----ANVTGPDGVPVEGSRYAADRRRYRRGYYGR--RRGPPRN 191
GE + + G KG A GP G + A R R G G GPP
Sbjct: 38 GEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGP 97
Query: 192 AGEIG----------EMKDGVPE---GAQL---QGPVHRNPTYRPRYRSRGPPRPRPAPA 235
G G +M G E GAQL QGP+ GP PR P
Sbjct: 98 PGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPM-------------GPMGPRGPPG 144
Query: 236 VGEAEDKENQQATSG-PNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPA 294
A + Q G P +P G P R P PP P DG+ K G+A P
Sbjct: 145 PAGAPGPQGFQGNPGEPGEP----GVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPP 200
Query: 295 PP 296
P
Sbjct: 201 GP 202
Score = 38.5 bits (88), Expect = 0.007
Identities = 87/349 (24%), Positives = 112/349 (32%), Gaps = 93/349 (26%)
Query: 16 PQAPTEAAAAAPQDPAPKSPVGSGAPQA-----AAPAPAAHVAGNPGGDAAPAATGTAAA 70
P AP A P + P G+ P+ +P PA +GNPG D P A G+A A
Sbjct: 299 PGAPGAKGEAGPT--GARGPEGAQGPRGEPGTPGSPGPAG-ASGNPGTDGIPGAKGSAGA 355
Query: 71 ASLATA---AGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNN 127
+A A G AT LG GF K +
Sbjct: 356 PGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEP-------GPAG 408
Query: 128 PRKYLRSVGDGETVEFDVVEGEKGAEA-ANVTGPDGVPVEGSRYAADRRRY--RRGYYGR 184
P+ G+ EG++GA GP G P G R A R + + G G
Sbjct: 409 PQGAPGPAGE---------EGKRGARGEPGGVGPIGPP--GERGAPGNRGFPGQDGLAGP 457
Query: 185 R-----RGPPRNAGEIGEMKD----------------GVPEGAQLQGPVHRNPTYRPRYR 223
+ RGP AG G D G P A QG V P+ P
Sbjct: 458 KGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKV--GPSGAPGED 515
Query: 224 SR-GPPRPR------------------------------PAPAVGEAEDKENQQATSGPN 252
R GPP P+ AP + K+ + +GP
Sbjct: 516 GRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPP 575
Query: 253 QPSVRRGYR------RPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAP 295
P+ G R P ++ P PP P + GK G P E AP
Sbjct: 576 GPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQG-VPGEAGAP 623
Score = 37.7 bits (86), Expect = 0.013
Identities = 81/347 (23%), Positives = 106/347 (30%), Gaps = 87/347 (25%)
Query: 14 TLPQAPTEAAAAAPQ--DPAPKSPVGS----GAP----QAAAPAPAAHVAGNPGGDAAPA 63
T P P A A + + P P GS GAP + P PA AG PG D P
Sbjct: 719 TGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGF-AGPPGADGQPG 777
Query: 64 ATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAI 123
A G A AG+ + A G T +
Sbjct: 778 AKGEQGEAGQKGDAGAPGPQGPSGAPGPQGP--------------------------TGV 811
Query: 124 KKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT-GPDGVPVEGSRYAADRRRYRRGYY 182
P+ + G F G G +N GP G P + R G
Sbjct: 812 --TGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPP 869
Query: 183 GRR-----RGPPRNAGEIGEMKDGVPEGAQ----------------LQG-------PVHR 214
GR +GP GE GE D P GA+ L G P
Sbjct: 870 GRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLP 929
Query: 215 NPTYRPRYRS-------RGPPRPRPAPAVGEAEDKENQQATSGPNQPSVR---------R 258
P+ P + RGPP P P + + ++ + G + P R R
Sbjct: 930 GPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDR 989
Query: 259 GYRRPYNYRRRPRPPNAP---SQDGKEAKAGEAPTENPAPPTQQSSA 302
G P PP +P GK+ GEA + P P+ + A
Sbjct: 990 GETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGA 1036
Score = 33.5 bits (75), Expect = 0.24
Identities = 38/159 (23%), Positives = 50/159 (31%), Gaps = 18/159 (11%)
Query: 148 GEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGR--RRGPPRNAGEIGEM-KDGVPE 204
GE G E + G DG P R G G GPP + G G K G
Sbjct: 963 GEPGREGS--PGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRG 1020
Query: 205 GAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPY 264
A QGP+ GP P A + + + +G +G+R
Sbjct: 1021 EAGAQGPM-------------GPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFT 1067
Query: 265 NYRRRPRPPNAPSQDGKEAKAGEAPTENPAPPTQQSSAE 303
+ P PP G AG + P P S +
Sbjct: 1068 GLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKD 1106
Score = 32.3 bits (72), Expect = 0.53
Identities = 32/118 (27%), Positives = 39/118 (33%), Gaps = 14/118 (11%)
Query: 186 RGPPRNAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQ 245
RGPP AG G P+G Q P RGPP P P K +
Sbjct: 140 RGPPGPAGAPG------PQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK 193
Query: 246 QATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGE--------APTENPAP 295
GP P RG+ P DG + +AG +P EN +P
Sbjct: 194 AGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSP 251
Score = 32.3 bits (72), Expect = 0.53
Identities = 39/152 (25%), Positives = 46/152 (30%), Gaps = 29/152 (19%)
Query: 159 GPDGVPVEGSRYAADRRRYRRGYYGRRR--GPPRNAGEIGEMKDGVPEGAQLQGPVHRNP 216
GP G E + RG+ G + GPP +G+ G P G
Sbjct: 1044 GPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSG----------- 1092
Query: 217 TYRPRYRSRGPPRPRPAPAVGEAEDKENQ-QATSGPNQPSVRRGYRRPYNYRRRPRPPNA 275
PR P P +D N GP P R G P P PP
Sbjct: 1093 -----------PRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGP 1141
Query: 276 PSQDG----KEAKAGEAPTENPAPPTQQSSAE 303
P G A AG P E P Q A+
Sbjct: 1142 PGPPGPGIDMSAFAGLGPREKGPDPLQYMRAD 1173
Score = 28.9 bits (63), Expect = 5.9
Identities = 47/186 (25%), Positives = 56/186 (30%), Gaps = 41/186 (22%)
Query: 148 GEKGAEAA-------NVTGPDGVPVEGSRYAADRR---------RYRRGYYGRR--RGPP 189
GEKG E A +TGP G P RG G R GPP
Sbjct: 702 GEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPP 761
Query: 190 RNAGEIGEM-KDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQAT 248
AG G DG P QG + + + GP P AP +
Sbjct: 762 GPAGFAGPPGADGQPGAKGEQGEAGQ----KGDAGAPGPQGPSGAPGPQGPTGVTGPKGA 817
Query: 249 SGPNQPSVRRGYRR------PYNYRRRPRPPNAPSQDGKE------------AKAGEAPT 290
G P G+ P P PP P GK+ +AGE
Sbjct: 818 RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGL 877
Query: 291 ENPAPP 296
+ PA P
Sbjct: 878 QGPAGP 883
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 41.2 bits (95), Expect = 0.001
Identities = 81/307 (26%), Positives = 100/307 (32%), Gaps = 57/307 (18%)
Query: 24 AAAPQDPAPKSPVG-------SGAP-QAAAPAPAAHVA-----GNPGGDAAPAATGTAAA 70
A P P K VG +GAP Q P P H G PG + +P G
Sbjct: 341 AGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGP 400
Query: 71 ASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRK 130
A + A G A G +R G G +N K + + P
Sbjct: 401 AGIPGAPGLMGARGPPGPAGANGAP---GLRGGAGEPGKNGAKGEPGPRGERGEAGIPGV 457
Query: 131 YLRSVGDGETVE--------FDVVEGEKGAEA-ANVTGPDGVPVEGSRYAADRRRYRRGY 181
DG+ GE+GA GP+G+P E RG
Sbjct: 458 PGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAG------ERGA 511
Query: 182 YGRRRGPPRNAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPP----RPRPAPAVG 237
G GP AGE G +DGVP G P R S G P +P P + G
Sbjct: 512 PG-PAGPRGAAGEPG--RDGVPGG----------PGMRGMPGSPGGPGSDGKPGPPGSQG 558
Query: 238 EAEDKENQQATSGP-NQPSVRRGYRRPYNYRRRPRP------PNAPSQDGKEAKAGEAPT 290
E+ + SGP QP V G+ P P P P G K GE
Sbjct: 559 ES-GRPGPPGPSGPRGQPGV-MGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGP 616
Query: 291 ENPAPPT 297
+ P PT
Sbjct: 617 QGPPGPT 623
Score = 38.5 bits (88), Expect = 0.007
Identities = 70/281 (24%), Positives = 82/281 (29%), Gaps = 44/281 (15%)
Query: 29 DPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEKKVLA 88
+P P P GS P PA GN G +P +G A GS A+ A
Sbjct: 889 NPGPPGPSGSPGKDGP-PGPA----GNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGA 943
Query: 89 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG 148
LG R G PR G V+G
Sbjct: 944 PGPLGIAGITGARGLAG----------------PPGMPGPRGSPGPQG---------VKG 978
Query: 149 EKGAEAAN-------VTGPDGVPVEGSRYAADRRRYRRGYYGR--RRGPPRNAGEIGEMK 199
E G AN GP G+P R G G R G P G+ GE
Sbjct: 979 ESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENG 1038
Query: 200 D----GVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPS 255
G P GPV R S GP P AP + Q G +
Sbjct: 1039 SPGAPGAPGHPGPPGPVGPAGKSGDRGES-GPAGPAGAPGPAGSRGAPGPQGPRGDKGET 1097
Query: 256 VRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPP 296
RG +R P P AP G + G + PA P
Sbjct: 1098 GERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGP 1138
Score = 38.1 bits (87), Expect = 0.010
Identities = 68/269 (25%), Positives = 84/269 (31%), Gaps = 23/269 (8%)
Query: 27 PQDPAPKSPVGS-GAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEKK 85
P +P PK G+ GAP A A G PG AP G A G+
Sbjct: 656 PGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGP 715
Query: 86 VLATKVLGTVKWFNVRNGYGFIN-RNDTKEDVFVHQTAIK-KNNPRKYLRSVGDGETVEF 143
A G R G G + D E + K+ PR +G
Sbjct: 716 PGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQ 775
Query: 144 DVVEGEKGAEAA-NVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEM-KDG 201
+GE GA + GP G P E RG GPP AG G ++G
Sbjct: 776 PGDKGEGGAPGLPGIAGPRGSPGE------------RG----ETGPPGPAGFPGAPGQNG 819
Query: 202 VPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSV--RRG 259
P G +G P + P PA G K + + GP RG
Sbjct: 820 EPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARG 879
Query: 260 YRRPYNYRRRPRPPNAPSQDGKEAKAGEA 288
P P PP GK+ G A
Sbjct: 880 LPGPPGSNGNPGPPGPSGSPGKDGPPGPA 908
Score = 34.7 bits (78), Expect = 0.11
Identities = 43/156 (27%), Positives = 52/156 (33%), Gaps = 18/156 (11%)
Query: 143 FDVVEGEKGAEAA-NVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDG 201
FD GEKG A + G +G+P E R G GR G P AG G DG
Sbjct: 268 FDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRP-GLPGAAGARGN--DG 324
Query: 202 VPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYR 261
GP GPP P A+ + + G N +RG
Sbjct: 325 ARGSDGQPGPP-------------GPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEP 371
Query: 262 RPYNYRRRPRPPNAPSQDGKEAKAGE-APTENPAPP 296
P + PP P +G GE P P P
Sbjct: 372 GPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAP 407
Score = 30.4 bits (67), Expect = 2.0
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 18 APTEAAAAAPQD-PAPKSPVGS-GAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLAT 75
AP A P P K P G GAP A P AA G PG D P G
Sbjct: 487 APGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAA---GEPGRDGVPGGPGMRGMPGSPG 543
Query: 76 AAGSE 80
GS+
Sbjct: 544 GPGSD 548
Score = 30.0 bits (66), Expect = 2.6
Identities = 39/155 (25%), Positives = 49/155 (31%), Gaps = 18/155 (11%)
Query: 148 GEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGR--------RRGPPRNAGEIGEMK 199
GE+GA GP G E R RG G + GPP + GE G
Sbjct: 507 GERGAPGP--AGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPG 564
Query: 200 DGVPEGAQLQ-------GPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPN 252
P G + Q GP + GP P P G+ + Q GP
Sbjct: 565 PPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGK-NGETGPQGPPGPT 623
Query: 253 QPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGE 287
P +G P + P G+ K GE
Sbjct: 624 GPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGE 658
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 41.2 bits (95), Expect = 0.001
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 197 EMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSV 256
++ +G P+G G +H + R R+ RP+ PA + + + + G +P+
Sbjct: 258 QLVEGAPDGV---GHLHGS---RGSGRAATTTRPQTTPAAASPDLPQPAERSRGEPRPAE 311
Query: 257 RRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPPTQQSSA 302
R RP RRP P APS +AG PT P ++S+A
Sbjct: 312 PRAPPRPPPAARRPPPATAPS----PRRAGSPPTREEEPRPRRSAA 353
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 40.4 bits (93), Expect = 0.002
Identities = 42/136 (30%), Positives = 55/136 (40%), Gaps = 30/136 (22%)
Query: 175 RRYRRGYYGRRRGP-----PRNAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPR 229
RR+RR R GP PR+ VPE L+ P P RPR +SR R
Sbjct: 118 RRWRR-----RPGPSPPLQPRSRHPHTRYPRAVPEATPLRPP----PGTRPRAKSRPGCR 168
Query: 230 PRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRP---------RPPNAPSQDG 280
P PA + +GP + R RP ++ RR PP+ ++G
Sbjct: 169 SSPFPA------RSRTPGEAGPPRGDPRPRAPRPGDHPRRSPALRETPSLSPPSPGRRNG 222
Query: 281 KEAKAGEAPTENPAPP 296
K A AG+ T P PP
Sbjct: 223 KRA-AGKGTTPQPQPP 237
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 40.4 bits (93), Expect = 0.002
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 19 PTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGG--DAAPAATGTAAAASLATA 76
P AA + P PAP +P + P APA A G+P G AAPA AAA + +A
Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSA 309
Query: 77 AGS 79
+
Sbjct: 310 GAA 312
Score = 34.7 bits (78), Expect = 0.11
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 16 PQAPTEAAAAAPQDPAP--KSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAA------TGT 67
P AP E A A +P P ++ G G PQ P P+ P G A PAA G+
Sbjct: 75 PAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGP-PSPRRPLVPAGPAPPAAKLRPPPEGS 133
Query: 68 AAA-----ASLATAAGSEDA 82
A + A+ A AAG E A
Sbjct: 134 AGSCAPVPAAAAVAAGPEPA 153
Score = 34.7 bits (78), Expect = 0.11
Identities = 23/50 (46%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 14 TLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPA 63
T+ Q P AAAP PA SP AAPAPAA A P APA
Sbjct: 236 TVIQTPPFVGAAAPPAPAAPSP-------PAAPAPAAPAAAPPPPPPAPA 278
Score = 34.3 bits (77), Expect = 0.14
Identities = 26/70 (37%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 16 PQAPTEAA-AAAPQDPAP------KSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTA 68
P AP AA AAAP P P + P P AAPA A GG A A
Sbjct: 258 PAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAP 317
Query: 69 AAASLATAAG 78
AA A +G
Sbjct: 318 AAGGPAGVSG 327
Score = 33.1 bits (74), Expect = 0.31
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 16 PQAPTEAAAAAPQD----PAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAA 70
P+ P A AP P P+ GS AP AA A AA P G A PA AA
Sbjct: 110 PRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAA 168
Score = 32.7 bits (73), Expect = 0.41
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 19 PTEAAAAAPQDPAPKSPVGSGAPQA----AAPAPAAHVAGNPG-GDAAPAATGTA 68
P AA AA +PAP P P A A P P PG G PA G A
Sbjct: 141 PAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAA 195
Score = 32.0 bits (71), Expect = 0.69
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 16 PQAPTEAAAAAPQDPAPKS------PVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAA 69
P P+ P PAP + P GS A PA AA AG A PA A
Sbjct: 105 PGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAK--PAG 162
Query: 70 AASLATAAG 78
A+LA AG
Sbjct: 163 PAALAARAG 171
Score = 31.6 bits (70), Expect = 0.91
Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 13 TTLPQAPTEAAA----AAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGG---------- 58
T P P AAA +A PAP G A + P P A A G
Sbjct: 292 TAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVV 351
Query: 59 DAAPAATGTAAAASLATAAGS 79
AAP A T AA+ A+ A S
Sbjct: 352 QAAPPAAQTLAASGPASTAAS 372
Score = 30.8 bits (68), Expect = 1.5
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 16 PQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPA-AHVAGNPGGDAAPAATGTAAAA 71
P P AAP P P + G+ A APA A AG P G + G AAAA
Sbjct: 284 PGHPAGPPTAAPAVPPPAAAQNGGS---AGAAPAPAPAAGGPAGVSGQPGPGAAAAA 337
Score = 29.3 bits (64), Expect = 4.5
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 16 PQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPA-PAAHVAGNPGGDAAPAATGTA 68
P+ P AAAA A + V SG+P AA A PAA G PG P G A
Sbjct: 45 PRTPEVRAAAAG---ALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRA 95
Score = 29.3 bits (64), Expect = 4.5
Identities = 18/64 (28%), Positives = 21/64 (32%)
Query: 4 AGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPA 63
AG A E A A P PA + + + A P P PG A P
Sbjct: 134 AGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPG 193
Query: 64 ATGT 67
A T
Sbjct: 194 AAQT 197
Score = 28.5 bits (62), Expect = 7.7
Identities = 19/59 (32%), Positives = 22/59 (37%)
Query: 19 PTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAA 77
P AAAA P K+ QAA PA A P AA G +L + A
Sbjct: 329 PGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPA 387
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 40.4 bits (93), Expect = 0.002
Identities = 25/94 (26%), Positives = 39/94 (41%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP T +A+ P P + S + A P P ++ G A
Sbjct: 4051 VTSTSSASTGDTTPLPVTDTSSASTGHATPLPVTDTSSASTGHATPLPVTSLSSVSTGHA 4110
Query: 61 APAATGTAAAASLATAAGSEDAEKKVLATKVLGT 94
P A +A +AS ++ E + T L T
Sbjct: 4111 TPLAVSSATSASTVSSDSPLKMETPGMTTPSLKT 4144
Score = 36.2 bits (82), Expect = 0.037
Identities = 19/76 (25%), Positives = 32/76 (42%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP T +A+ P P + S + A P P ++ GD
Sbjct: 2995 VTDTSSASTGQATALPVTSTSSASTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDT 3054
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 3055 TPLPVTSPSSASTGHA 3070
Score = 34.7 bits (78), Expect = 0.11
Identities = 19/76 (25%), Positives = 31/76 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T T LP +A+ P P + S + A P P ++ GD
Sbjct: 3635 VTDASSVSTGHATPLPVTDASSASTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDT 3694
Query: 61 APAATGTAAAASLATA 76
P A++AS A
Sbjct: 3695 TPLPVTDASSASTGHA 3710
Score = 34.3 bits (77), Expect = 0.14
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 7 ATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATG 66
A+T T+TLP +A+ P P + S + A P P ++ GD P
Sbjct: 3369 ASTGDTSTLPVTGASSASTGHATPLPVTDTSSVSTGHATPLPVTSLSSVSTGDTTPLPVT 3428
Query: 67 TAAAASLATA 76
A++AS A
Sbjct: 3429 DASSASTGQA 3438
Score = 33.9 bits (76), Expect = 0.18
Identities = 20/76 (26%), Positives = 31/76 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP T +A+ P P + + S + P P + G A
Sbjct: 3011 VTSTSSASTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHA 3070
Query: 61 APAATGTAAAASLATA 76
P A++AS A
Sbjct: 3071 TPLLVTDASSASTGQA 3086
Score = 33.5 bits (75), Expect = 0.24
Identities = 20/70 (28%), Positives = 29/70 (41%)
Query: 7 ATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATG 66
ATT TT LP +A+ P P + + S + P P + G A+P
Sbjct: 1689 ATTDDTTRLPVTDVSSASTGQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHASPLLVT 1748
Query: 67 TAAAASLATA 76
A++AS A
Sbjct: 1749 DASSASTGQA 1758
Score = 33.5 bits (75), Expect = 0.24
Identities = 19/76 (25%), Positives = 31/76 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T+LP T +A+ P P + S + A P P + G A
Sbjct: 2163 VTDTSSASTGHATSLPVTDTSSASTGHATPLPVTDTSSASTGQATPLPVTSPSSASTGHA 2222
Query: 61 APAATGTAAAASLATA 76
P ++AS A
Sbjct: 2223 IPLLVTDTSSASTGQA 2238
Score = 33.5 bits (75), Expect = 0.24
Identities = 19/76 (25%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP T +A+ P P + S + A P P + GD
Sbjct: 2563 VTDTSAASTGHATPLPVTSTSSASTGDTTPLPVTDTYSASTGQATPLPVTDTSSASTGDT 2622
Query: 61 APAATGTAAAASLATA 76
P ++AS A
Sbjct: 2623 TPLPVTDTSSASTGHA 2638
Score = 32.7 bits (73), Expect = 0.41
Identities = 19/76 (25%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP T +A+ P P + S + P P + GD
Sbjct: 1571 VTSPSSASTGHTTPLPVTDTSSASKGDTTPLPVTSPSSASTGHTTPLPVTDTSSASTGDT 1630
Query: 61 APAATGTAAAASLATA 76
P A++ S A
Sbjct: 1631 TPLPVTNASSLSTGHA 1646
Score = 32.7 bits (73), Expect = 0.41
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP T +A+ P P + S + A P P + + G A
Sbjct: 2595 VTDTYSASTGQATPLPVTDTSSASTGDTTPLPVTDTSSASTGHATPLPVTNTSSVSTGHA 2654
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 2655 TPLHVTSPSSAS 2666
Score = 32.7 bits (73), Expect = 0.41
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A A+T TT LP T +A+ P P + + S + P P + G A
Sbjct: 3651 VTDASSASTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTDASSASTGHA 3710
Query: 61 AP 62
P
Sbjct: 3711 TP 3712
Score = 32.3 bits (72), Expect = 0.53
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T T LP T +A+ P P + S + A P P + G A
Sbjct: 4035 VTDASSVSTGHGTPLPVTSTSSASTGDTTPLPVTDTSSASTGHATPLPVTDTSSASTGHA 4094
Query: 61 AP--------AATG--TAAAASLATAAGSEDAE 83
P +TG T A S AT+A + ++
Sbjct: 4095 TPLPVTSLSSVSTGHATPLAVSSATSASTVSSD 4127
Score = 32.0 bits (71), Expect = 0.69
Identities = 19/76 (25%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP T +A+ P P + + S + P P + G A
Sbjct: 2019 VTSLSSASTGDTTPLPVTDTSSASTGQDTPLPVTSLSSVSTGDTTPLPVTSPSSASTGHA 2078
Query: 61 APAATGTAAAASLATA 76
P A++ S A
Sbjct: 2079 TPLLVTDASSVSTGHA 2094
Score = 32.0 bits (71), Expect = 0.69
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T T LP T +A+ P P + S + P P + GD
Sbjct: 3283 VTSPSSASTGHATPLPVTSTSSASTGHATPVPVTSTSSASTGHTTPLPVTDTSSASTGDT 3342
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 3343 TPLPVTSPSSAS 3354
Score = 32.0 bits (71), Expect = 0.69
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A A+T T LP + + P P + S + A P P ++ GD
Sbjct: 3955 VTDASSASTGHATPLPLTSLSSVSTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDT 4014
Query: 61 APAATGTAAAAS 72
P ++AS
Sbjct: 4015 TPLPVTIPSSAS 4026
Score = 31.6 bits (70), Expect = 0.91
Identities = 18/76 (23%), Positives = 28/76 (36%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP T +A+ P P + S + P P + G A
Sbjct: 2579 VTSTSSASTGDTTPLPVTDTYSASTGQATPLPVTDTSSASTGDTTPLPVTDTSSASTGHA 2638
Query: 61 APAATGTAAAASLATA 76
P ++ S A
Sbjct: 2639 TPLPVTNTSSVSTGHA 2654
Score = 31.6 bits (70), Expect = 0.91
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAP--------APAAHV 52
+++ A+T TT LP T +A+ P P + S + A P A H
Sbjct: 2611 VTDTSSASTGDTTPLPVTDTSSASTGHATPLPVTNTSSVSTGHATPLHVTSPSSASTGHT 2670
Query: 53 AGNPGGDAAPAATGTAAAASLATAA 77
P DA+ +TG A + + A+
Sbjct: 2671 TPLPVTDASSVSTGHATSLPVTDAS 2695
Score = 31.6 bits (70), Expect = 0.91
Identities = 18/76 (23%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T T LP T +A+ P + S + A P P ++ GD
Sbjct: 3459 VTDASSVSTGHATPLPVTDTSSASTGDTTRLPVTDTSSASTGQATPLPVTSLSSVSTGDT 3518
Query: 61 APAATGTAAAASLATA 76
P A++ S A
Sbjct: 3519 TPLLVTDASSVSTGHA 3534
Score = 31.2 bits (69), Expect = 1.2
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T T+LP T AA+ P P + S + P P G A
Sbjct: 2547 VTSPSSASTGHATSLPVTDTSAASTGHATPLPVTSTSSASTGDTTPLPVTDTYSASTGQA 2606
Query: 61 APAATGTAAAAS 72
P ++AS
Sbjct: 2607 TPLPVTDTSSAS 2618
Score = 31.2 bits (69), Expect = 1.2
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T T LP + + P P + S + A P P ++ GD
Sbjct: 2755 VTDASSVSTGHATPLPLTSLSSVSTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDT 2814
Query: 61 APAATGTAAAASLATA 76
P ++AS A
Sbjct: 2815 TPLPVTDTSSASTGHA 2830
Score = 31.2 bits (69), Expect = 1.2
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 7 ATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATG 66
A+T TT LP T +A+ P P + S + P V+ G A P
Sbjct: 3753 ASTGDTTPLPVTDTSSASTRHATPLPVTDTSSASTDDTTRLPVTDVSSASTGHATPLPVT 3812
Query: 67 TAAAAS 72
+ ++AS
Sbjct: 3813 STSSAS 3818
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/76 (22%), Positives = 31/76 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T+LP T + + P + S + A P P ++ GD
Sbjct: 1123 VTDTSSASTGHATSLPVTDTSSVSTGHTTPLHVTDASSASTGQATPLPVTSLSSVSTGDT 1182
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 1183 TPLPVTSPSSASTGHA 1198
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP T + + P P + S + A P P + G A
Sbjct: 3251 VTDISSASTGQATPLPVTNTSSVSTGDTMPLPVTSPSSASTGHATPLPVTSTSSASTGHA 3310
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 3311 TPVPVTSTSSAS 3322
Score = 30.8 bits (68), Expect = 1.5
Identities = 18/76 (23%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP T +A+ P + V S + A P P + GD
Sbjct: 3763 VTDTSSASTRHATPLPVTDTSSASTDDTTRLPVTDVSSASTGHATPLPVTSTSSASTGDT 3822
Query: 61 APAATGTAAAASLATA 76
P ++ S A
Sbjct: 3823 TPLPVTDTSSVSTGHA 3838
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/76 (22%), Positives = 28/76 (36%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T T LP T + + P P + S + A P P + GD
Sbjct: 3859 VTDTSSVSTGHATPLPVTSTSSVSTGHATPLPVTSPSSASTGHATPVPVTSTSSASTGDT 3918
Query: 61 APAATGTAAAASLATA 76
P A++ S A
Sbjct: 3919 TPLPVTNASSLSTGHA 3934
Score = 30.4 bits (67), Expect = 2.0
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T TT LP T +A+ P + S + A P P ++ GD
Sbjct: 1267 VTDTSSVSTGDTTPLPVTSTSSASTGHVTPLHVTSPSSASTGHATPLPVTSLSSASTGDT 1326
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 1327 MPLPVTSPSSAS 1338
Score = 30.4 bits (67), Expect = 2.0
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T TT LP T +A+ P + S + A P P ++ GD
Sbjct: 1475 VTDTSSVSTGDTTPLPVTSTSSASTGHVTPLHVTSPSSASTGHATPLPVTSLSSASTGDT 1534
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 1535 MPLPVTSPSSAS 1546
Score = 30.4 bits (67), Expect = 2.0
Identities = 17/76 (22%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T T+LP + + P P + S + A P P ++ GD
Sbjct: 2723 VTDASSVSTGHATSLPVTDASSVSTGHATPLPVTDASSVSTGHATPLPLTSLSSVSTGDT 2782
Query: 61 APAATGTAAAASLATA 76
P ++AS A
Sbjct: 2783 TPLPVTDTSSASTGQA 2798
Score = 30.4 bits (67), Expect = 2.0
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T TT LP T +A+ P P + S + P P + G
Sbjct: 3539 VTDTSSASTGDTTRLPVTDTSSASTGQATPLPVTIPSSSSSGHTTPLPVTSTSSVSTGHV 3598
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 3599 TPLHVTSPSSAS 3610
Score = 30.0 bits (66), Expect = 2.6
Identities = 16/72 (22%), Positives = 28/72 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T T LP + + P P + S + A P P ++ GD
Sbjct: 1971 VTDASSVSTGHATPLPVTDASSVSTGHATPLPVTDTSSVSTGQATPLPVTSLSSASTGDT 2030
Query: 61 APAATGTAAAAS 72
P ++AS
Sbjct: 2031 TPLPVTDTSSAS 2042
Score = 30.0 bits (66), Expect = 2.6
Identities = 17/76 (22%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T T+LP T +A+ P + S + A P P + G A
Sbjct: 2147 VTDTSSVSTGHATSLPVTDTSSASTGHATSLPVTDTSSASTGHATPLPVTDTSSASTGQA 2206
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 2207 TPLPVTSPSSASTGHA 2222
Score = 30.0 bits (66), Expect = 2.6
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A A+T T LP +A+ P P + S + A P + GD
Sbjct: 2307 VTDASSASTGHATPLPVTSLSSASTGDTTPLPVTSPSSASTGHATPLHVTDASSVSTGDT 2366
Query: 61 APAATGTAAAAS 72
P ++++AS
Sbjct: 2367 TPLPVTSSSSAS 2378
Score = 30.0 bits (66), Expect = 2.6
Identities = 19/89 (21%), Positives = 32/89 (35%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ +T TT LP T +A+ P P + + S + P P + G A
Sbjct: 2771 LTSLSSVSTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTDTSSASTGHA 2830
Query: 61 APAATGTAAAASLATAAGSEDAEKKVLAT 89
++AS A D + +T
Sbjct: 2831 TSLPVTDTSSASTGHATPLPDTDTSSAST 2859
Score = 30.0 bits (66), Expect = 2.6
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAP--------AAHV 52
++ A+T T LP T +A+ P P + + S + P P H
Sbjct: 2931 VTSPSSASTGHATPLPVTDTSSASTGHATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHT 2990
Query: 53 AGNPGGDAAPAATGTAAAASLATAAGSEDAE 83
P D + A+TG A A + + + + +
Sbjct: 2991 TPLPVTDTSSASTGQATALPVTSTSSASTGD 3021
Score = 29.6 bits (65), Expect = 3.4
Identities = 16/72 (22%), Positives = 27/72 (37%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP + + P P + S + P P + GD
Sbjct: 1539 VTSPSSASTGDTTPLPVTDASSVSTGHTTPLPVTSPSSASTGHTTPLPVTDTSSASKGDT 1598
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 1599 TPLPVTSPSSAS 1610
Score = 29.6 bits (65), Expect = 3.4
Identities = 17/76 (22%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+ TT LP +A+ P P + S + P P + + G A
Sbjct: 1587 VTDTSSASKGDTTPLPVTSPSSASTGHTTPLPVTDTSSASTGDTTPLPVTNASSLSTGHA 1646
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 1647 TPLHVTSPSSASTGHA 1662
Score = 29.6 bits (65), Expect = 3.4
Identities = 16/76 (21%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T T LP +A+ P P + S + P P ++ GD
Sbjct: 2003 VTDTSSVSTGQATPLPVTSLSSASTGDTTPLPVTDTSSASTGQDTPLPVTSLSSVSTGDT 2062
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 2063 TPLPVTSPSSASTGHA 2078
Score = 29.6 bits (65), Expect = 3.4
Identities = 16/76 (21%), Positives = 28/76 (36%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T T LP + + P P + S + A P P ++ GD
Sbjct: 3395 VTDTSSVSTGHATPLPVTSLSSVSTGDTTPLPVTDASSASTGQATPLPVTSLSSVSTGDT 3454
Query: 61 APAATGTAAAASLATA 76
P A++ S A
Sbjct: 3455 TPLLVTDASSVSTGHA 3470
Score = 29.6 bits (65), Expect = 3.4
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A A+T T LP + + P P + S + A P P ++ GD
Sbjct: 3699 VTDASSASTGHATPLPVTIPSSVSTGDTMPLPVTSPSSASTGHATPLPVTGLSSASTGDT 3758
Query: 61 APAATGTAAAAS 72
P ++AS
Sbjct: 3759 TPLPVTDTSSAS 3770
Score = 29.3 bits (64), Expect = 4.5
Identities = 16/76 (21%), Positives = 28/76 (36%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T T LP +A+ P P + S + P P ++ GD
Sbjct: 1027 VTDTSSESTGHVTPLPVTSFSSASTGDSTPLPVTDTSSASTGHVTPLPVTSLSSASTGDT 1086
Query: 61 APAATGTAAAASLATA 76
P ++AS A
Sbjct: 1087 TPLPVTDTSSASTGHA 1102
Score = 29.3 bits (64), Expect = 4.5
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP + + P + S + A P P ++ GD
Sbjct: 1331 VTSPSSASTGDTTPLPVTDASSVSTGHTTPLHVTDASSASTGQATPLPVTSLSSVSTGDT 1390
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 1391 TPLPVTSPSSASTGHA 1406
Score = 29.3 bits (64), Expect = 4.5
Identities = 18/77 (23%), Positives = 30/77 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T T LP +A P + V S + A P P ++ GD
Sbjct: 1667 VTSTSSASTGHATPLPVTGLSSATTDDTTRLPVTDVSSASTGQATPLPVTSLSSVSTGDT 1726
Query: 61 APAATGTAAAASLATAA 77
P + ++AS A+
Sbjct: 1727 TPLPVTSPSSASTGHAS 1743
Score = 29.3 bits (64), Expect = 4.5
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T T+LP +A+ P P + S + P P + P G A
Sbjct: 1907 VTDASSVSTGHATSLPVTSLSSASTGDTTPLPVTSPSSASSGHTTPLPVTDASSVPTGHA 1966
Query: 61 APAATGTAAAASLATA 76
A++ S A
Sbjct: 1967 TSLPVTDASSVSTGHA 1982
Score = 29.3 bits (64), Expect = 4.5
Identities = 17/76 (22%), Positives = 27/76 (35%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ +T TT LP +A+ P P + S + A P + GD
Sbjct: 2963 VTSLSSVSTGDTTPLPVTSPSSASTGHTTPLPVTDTSSASTGQATALPVTSTSSASTGDT 3022
Query: 61 APAATGTAAAASLATA 76
P ++AS A
Sbjct: 3023 TPLPVTDTSSASTGQA 3038
Score = 29.3 bits (64), Expect = 4.5
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP + + P P + S + A P P + GD
Sbjct: 3667 VTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTDASSASTGHATPLPVTIPSSVSTGDT 3726
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 3727 MPLPVTSPSSASTGHA 3742
Score = 29.3 bits (64), Expect = 4.5
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T TT LP +A+ P P + S + P P + G A
Sbjct: 3779 VTDTSSASTDDTTRLPVTDVSSASTGHATPLPVTSTSSASTGDTTPLPVTDTSSVSTGHA 3838
Query: 61 A--PAATGTAAAASLAT 75
P + ++A+ AT
Sbjct: 3839 TSLPVTSRSSASTGHAT 3855
Score = 29.3 bits (64), Expect = 4.5
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T T LP T + + P P + S + A P P + G A
Sbjct: 3843 VTSRSSASTGHATPLPVTDTSSVSTGHATPLPVTSTSSVSTGHATPLPVTSPSSASTGHA 3902
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 3903 TPVPVTSTSSAS 3914
Score = 28.9 bits (63), Expect = 5.9
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T+LP T + + P P + S + A P + G
Sbjct: 1091 VTDTSSASTGHATSLPVTDTSSVSTGHTTPLPVTDTSSASTGHATSLPVTDTSSVSTGHT 1150
Query: 61 APAATGTAAAASLATA 76
P A++AS A
Sbjct: 1151 TPLHVTDASSASTGQA 1166
Score = 28.9 bits (63), Expect = 5.9
Identities = 19/76 (25%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP T +A+ P P + S + A P + G A
Sbjct: 1603 VTSPSSASTGHTTPLPVTDTSSASTGDTTPLPVTNASSLSTGHATPLHVTSPSSASTGHA 1662
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 1663 TPLPVTSTSSASTGHA 1678
Score = 28.9 bits (63), Expect = 5.9
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T T LP +A+ P + V S + A P P + GD
Sbjct: 1763 VTDTSSVSTAHATPLPVTGLSSASTDDTTRLPVTDVSSASTGQAIPLPVTSPSSASTGDT 1822
Query: 61 APAATGTAAAAS 72
P A++AS
Sbjct: 1823 TPLPVTDASSAS 1834
Score = 28.9 bits (63), Expect = 5.9
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP +A++ P P + A+ P H P DA
Sbjct: 1923 VTSLSSASTGDTTPLPVTSPSSASSGHTTPLPVTD--------ASSVPTGHATSLPVTDA 1974
Query: 61 APAATGTAAAASLATAA 77
+ +TG A + A+
Sbjct: 1975 SSVSTGHATPLPVTDAS 1991
Score = 28.9 bits (63), Expect = 5.9
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP T +A+ P P + S + A P + G A
Sbjct: 2179 VTDTSSASTGHATPLPVTDTSSASTGQATPLPVTSPSSASTGHAIPLLVTDTSSASTGQA 2238
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 2239 TPLPVTSLSSAS 2250
Score = 28.9 bits (63), Expect = 5.9
Identities = 17/76 (22%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP +A+ P P + S + A P ++ GD
Sbjct: 2227 VTDTSSASTGQATPLPVTSLSSASTGDTTPLPVTDASSVSTGHATSLPVTSLSSVSTGDT 2286
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 2287 TPLPVTSPSSASTGHA 2302
Score = 28.9 bits (63), Expect = 5.9
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ +T TT LP +A+ P + S + A P P ++ GD
Sbjct: 2275 VTSLSSVSTGDTTPLPVTSPSSASTGHATPLHVTDASSASTGHATPLPVTSLSSASTGDT 2334
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 2335 TPLPVTSPSSASTGHA 2350
Score = 28.9 bits (63), Expect = 5.9
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T TT LP + +A++ P P + S + P P + G A
Sbjct: 2355 VTDASSVSTGDTTPLPVTSSSSASSGHTTPLPVTDASSASTGDTTPLPVTDTSSASTGHA 2414
Query: 61 AP-AATGTAAAAS 72
TG ++A++
Sbjct: 2415 THLPVTGLSSAST 2427
Score = 28.9 bits (63), Expect = 5.9
Identities = 16/76 (21%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T T LP +A+ P + + S + A P P + + GD
Sbjct: 3219 VTDTSSVSTGHATPLPVTGLSSASTGDTTRLPVTDISSASTGQATPLPVTNTSSVSTGDT 3278
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 3279 MPLPVTSPSSASTGHA 3294
Score = 28.9 bits (63), Expect = 5.9
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T TT LP T +A+ P P + + S + P + G A
Sbjct: 3475 VTDTSSASTGDTTRLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLLVTDASSVSTGHA 3534
Query: 61 APAATGTAAAAS 72
P ++AS
Sbjct: 3535 TPLPVTDTSSAS 3546
Score = 28.9 bits (63), Expect = 5.9
Identities = 17/76 (22%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T T+LP +A+ P P + S + A P P + G A
Sbjct: 3827 VTDTSSVSTGHATSLPVTSRSSASTGHATPLPVTDTSSVSTGHATPLPVTSTSSVSTGHA 3886
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 3887 TPLPVTSPSSASTGHA 3902
Score = 28.9 bits (63), Expect = 5.9
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAP--------AAHV 52
++ +T TT LP T +A+ P P + + S + P P + H
Sbjct: 3971 LTSLSSVSTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTIPSSASSGHT 4030
Query: 53 AGNPGGDAAPAATG 66
P DA+ +TG
Sbjct: 4031 TSLPVTDASSVSTG 4044
Score = 28.5 bits (62), Expect = 7.7
Identities = 16/72 (22%), Positives = 27/72 (37%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T TT LP +A+ P P + S + P P + G
Sbjct: 1555 VTDASSVSTGHTTPLPVTSPSSASTGHTTPLPVTDTSSASKGDTTPLPVTSPSSASTGHT 1614
Query: 61 APAATGTAAAAS 72
P ++AS
Sbjct: 1615 TPLPVTDTSSAS 1626
Score = 28.5 bits (62), Expect = 7.7
Identities = 16/72 (22%), Positives = 28/72 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A T T+LP + + P P + S + A P P + G A
Sbjct: 1955 VTDASSVPTGHATSLPVTDASSVSTGHATPLPVTDASSVSTGHATPLPVTDTSSVSTGQA 2014
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 2015 TPLPVTSLSSAS 2026
Score = 28.5 bits (62), Expect = 7.7
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP +A+ P + S + A P P ++ GD
Sbjct: 2195 VTDTSSASTGQATPLPVTSPSSASTGHAIPLLVTDTSSASTGQATPLPVTSLSSASTGDT 2254
Query: 61 APAATGTAAAASLATA 76
P A++ S A
Sbjct: 2255 TPLPVTDASSVSTGHA 2270
Score = 28.5 bits (62), Expect = 7.7
Identities = 16/72 (22%), Positives = 27/72 (37%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP T +A+ P + S + P P + G A
Sbjct: 2979 VTSPSSASTGHTTPLPVTDTSSASTGQATALPVTSTSSASTGDTTPLPVTDTSSASTGQA 3038
Query: 61 APAATGTAAAAS 72
P + ++ S
Sbjct: 3039 TPLPVTSLSSVS 3050
Score = 28.5 bits (62), Expect = 7.7
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ +T TT LP +A+ P + S + A P P ++ GD
Sbjct: 3043 VTSLSSVSTGDTTPLPVTSPSSASTGHATPLLVTDASSASTGQATPLPVTSLSSVSTGDT 3102
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 3103 TPLPVTSPSSASTGHA 3118
Score = 28.5 bits (62), Expect = 7.7
Identities = 18/70 (25%), Positives = 27/70 (38%)
Query: 7 ATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATG 66
A+T TT LP +A+ P P + S + P P + G A P
Sbjct: 3241 ASTGDTTRLPVTDISSASTGQATPLPVTNTSSVSTGDTMPLPVTSPSSASTGHATPLPVT 3300
Query: 67 TAAAASLATA 76
+ ++AS A
Sbjct: 3301 STSSASTGHA 3310
Score = 28.5 bits (62), Expect = 7.7
Identities = 18/76 (23%), Positives = 28/76 (36%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T T LP T +A+ P + S + A P P + GD
Sbjct: 3603 VTSPSSASTGHVTPLPVTSTSSASTGHATPLLVTDASSVSTGHATPLPVTDASSASTGDT 3662
Query: 61 APAATGTAAAASLATA 76
P ++AS A
Sbjct: 3663 TPLPVTDTSSASTGQA 3678
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 40.0 bits (92), Expect = 0.003
Identities = 44/157 (28%), Positives = 60/157 (38%), Gaps = 24/157 (15%)
Query: 146 VEGEKGAEAA-NVTGPDGVP-VEGSRYAADRRRYRRGYYGR--RRGPPRNAGEIGEMKDG 201
++G G E GP G+P + G G GR + GPP G+ GE
Sbjct: 664 IQGSPGKEGPPGPQGPSGLPGIPGEE----------GKEGRDGKPGPPGEPGKAGEPGLP 713
Query: 202 VPEGAQLQGPVHRNPTYRPRYRSRGPPRPRP---APAVGEAEDKENQQATSGPNQPSVRR 258
PEGA+ GP P ++ G P PR A + E + +GP P +
Sbjct: 714 GPEGAR--GP----PGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQ 767
Query: 259 GYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAP 295
G R P P P P G + G + EN +P
Sbjct: 768 GPRGPPGKNGSPGSPGEPGPSGTPGQKG-SKGENGSP 803
Score = 33.1 bits (74), Expect = 0.31
Identities = 19/52 (36%), Positives = 23/52 (44%)
Query: 16 PQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGT 67
PQ PT A Q+ A +P +G P A A +G PG AP GT
Sbjct: 375 PQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGT 426
Score = 33.1 bits (74), Expect = 0.31
Identities = 49/168 (29%), Positives = 61/168 (36%), Gaps = 31/168 (18%)
Query: 148 GEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEG-- 205
GEKG V G +GVP + R G G + GPP G+ G+ G+P
Sbjct: 819 GEKG-----VPGKEGVPGKPGEPGFKGERGDPGIKGDK-GPPGGKGQPGD--PGIPGHKG 870
Query: 206 -AQLQGPVHRNPTYRPRYRSRGPPRPRPAPAV----GEAEDKENQQATSGPN---QPSVR 257
L GP P GPP P P GE+ E + Q R
Sbjct: 871 HTGLMGPQGLPGENGPV----GPPGPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETR 926
Query: 258 RGY---RRPYNYRR----RPRPPNAPSQDGKEAKAGEAPTENPAPPTQ 298
Y + P Y + RP PP P +DG +AG P P P Q
Sbjct: 927 LAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAG--PMGEPGRPGQ 972
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 40.0 bits (92), Expect = 0.003
Identities = 39/149 (26%), Positives = 51/149 (34%), Gaps = 11/149 (7%)
Query: 148 GEKGAEAA-NVTGPDGVPVEGSRYAADRRRYRRGYYGRR--RGPPRNAGEIGEMKDGVPE 204
GE+G A V GP G + D R G G + RG P G G + D P
Sbjct: 1655 GERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPG 1714
Query: 205 GAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPY 264
+ P R GP P+ P + A + + GP P G R P
Sbjct: 1715 AREKGEPGDRG--------QEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPA 1766
Query: 265 NYRRRPRPPNAPSQDGKEAKAGEAPTENP 293
+ PP + G + K G A P
Sbjct: 1767 GEKGDRGPPGLDGRSGLDGKPGAAGPSGP 1795
Score = 34.7 bits (78), Expect = 0.11
Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 187 GPPRNAGEIGEMKDGVPE-GAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQ 245
GPP GE G+ +DG P Q P + P P R P P +GEA +K +
Sbjct: 1439 GPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGP-LGEAGEKGER 1497
Query: 246 QATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGE 287
GP P+ RG P P G++ + GE
Sbjct: 1498 ----GPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGE 1535
Score = 30.4 bits (67), Expect = 2.0
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 29 DPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAG 78
DP P+ P G + P P+ +AG PG P G A A G
Sbjct: 2010 DPGPQGPPGLALGERGPPGPSG-LAGEPGKPGIPGLPGRAGGVGEAGRPG 2058
Score = 30.4 bits (67), Expect = 2.0
Identities = 52/210 (24%), Positives = 66/210 (31%), Gaps = 22/210 (10%)
Query: 24 AAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAE 83
A P DP G+ P+ P V G+PG P G L A G
Sbjct: 2347 AGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFP 2406
Query: 84 KKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 143
+ +G R G R + P SVG
Sbjct: 2407 GQTGPRGEMGQPGPSGERGLAGPPGREGIPGPL----------GPPGPPGSVGPPGA--- 2453
Query: 144 DVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVP 203
++G+KG + GP G E D R + G G GPP + GE GE D
Sbjct: 2454 SGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRG-LTGPPGSRGERGEKGD--V 2510
Query: 204 EGAQLQGPVHRNPTYRPRYRSRGPPRPRPA 233
A L+G + GPP PR A
Sbjct: 2511 GSAGLKGDKGDSAVI------LGPPGPRGA 2534
Score = 29.3 bits (64), Expect = 4.5
Identities = 42/156 (26%), Positives = 55/156 (35%), Gaps = 30/156 (19%)
Query: 146 VEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP----PRNAGEIGEMKDG 201
V G GA+ GP+G P R+ +G GR P P AG GE D
Sbjct: 1511 VAGRPGAK-----GPEGPP------GPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDV 1559
Query: 202 VPEGAQ----LQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVR 257
P G + +QG R P P G P P+ P + G + P
Sbjct: 1560 GPAGPRGATGVQG--ERGP---PGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGE 1614
Query: 258 RGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENP 293
+G RP PP G++ + GE E P
Sbjct: 1615 KGDPG------RPGPPGPVGPRGRDGEVGEKGDEGP 1644
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.127 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,380,836
Number of Sequences: 37866
Number of extensions: 982536
Number of successful extensions: 12953
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 693
Number of HSP's that attempted gapping in prelim test: 8308
Number of HSP's gapped (non-prelim): 4706
length of query: 303
length of database: 18,247,518
effective HSP length: 102
effective length of query: 201
effective length of database: 14,385,186
effective search space: 2891422386
effective search space used: 2891422386
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.