Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: OTUD5 Sequence: fasta or formatted (349aa) NCBI GI: 209977067
Description:

OTU domain containing 5 isoform c

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [566aa] OTU domain containing 5 isoform b
alt prot [566aa] OTU domain containing 5 isoform b
alt prot [571aa] OTU domain containing 5 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         33           3
 C cysteine            1.7          6           1
 D aspartate           5.4         19           3
 E glutamate           8.0         28           2
 F phenylalanine       2.3          8           1
 G glycine             4.3         15           1
 H histidine           3.2         11           1
 I isoleucine          3.4         12           1
 K lysine              5.4         19           2
 L leucine             6.0         21           1
 M methionine          3.4         12           1
 N asparagine          4.9         17           2
 P proline             6.9         24           3
 Q glutamine           5.7         20           2
 R arginine            5.4         19           1
 S serine              9.7         34           2
 T threonine           4.3         15           2
 V valine              5.2         18           2
 W tryptophan          1.4          5           1
 Y tyrosine            3.7         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   OTU domain containing 5 isoform c 
OTUD5                 1.000   OTU domain containing 5 isoform b 
OTUD5                 1.000   OTU domain containing 5 isoform b 
OTUD5                 0.990   OTU domain containing 5 isoform a 
OTUD1                 0.043   OTU domain containing 1 
OTUD3                 0.039   OTU domain containing 3 
OTUD6A                0.032   OTU domain containing 6A 
OTUD6B                0.025   OTU domain containing 6B 
LOC100293438          0.020   PREDICTED: hypothetical protein 
ACIN1                 0.020   apoptotic chromatin condensation inducer 1 
SRRM2                 0.016   splicing coactivator subunit SRm300 
KIF26B                0.016   kinesin family member 26B 
TBP                   0.016   TATA box binding protein 
LOC100291136          0.014   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.014   PREDICTED: hypothetical protein XP_002343480 
POU2F1                0.014   POU class 2 homeobox 1 
PXK                   0.014   PX domain containing serine/threonine kinase 
LOC389333             0.014   hypothetical protein LOC389333 
LOC728056             0.014   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC728056             0.014   PREDICTED: similar to IQ motif and SEC7 domain-cont...
OTUD4                 0.013   OTU domain containing 4 protein isoform 3 
OTUD4                 0.013   OTU domain containing 4 protein isoform 2 
OTUD4                 0.013   OTU domain containing 4 protein isoform 1 
HOXD13                0.013   homeobox D13 
NUMA1                 0.013   nuclear mitotic apparatus protein 1 
SIX2                  0.013   SIX homeobox 2 
AMOTL2                0.013   angiomotin like 2 
ZFC3H1                0.012   proline/serine-rich coiled-coil 2 
NKX6-1                0.012   NK6 transcription factor related, locus 1 
CENPV                 0.012   proline rich 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press