Guide to the Human Genome
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Name: KIAA1671 Sequence: fasta or formatted (1806aa) NCBI GI: 223633988
Description:

hypothetical protein LOC85379

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0        145           3
 C cysteine            1.0         18           1
 D aspartate           5.2         94           2
 E glutamate           8.5        153           3
 F phenylalanine       2.2         39           2
 G glycine             7.1        128           2
 H histidine           2.0         36           2
 I isoleucine          1.7         31           2
 K lysine              6.5        117           2
 L leucine             7.0        127           2
 M methionine          1.6         28           1
 N asparagine          1.7         30           3
 P proline            11.1        200           4
 Q glutamine           3.8         69           2
 R arginine            7.9        143           3
 S serine             11.5        207           3
 T threonine           5.6        102           2
 V valine              5.4         97           2
 W tryptophan          1.4         26           2
 Y tyrosine            0.9         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC85379 
LOC100289134          0.836   PREDICTED: hypothetical protein XP_002343933 
TNKS1BP1              0.015   tankyrase 1-binding protein 1 
MAPT                  0.009   microtubule-associated protein tau isoform 1 
GLTSCR1               0.009   glioma tumor suppressor candidate region gene 1 [Ho...
WIPF1                 0.009   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.009   WAS/WASL interacting protein family, member 1 
NEFH                  0.009   neurofilament, heavy polypeptide 200kDa 
MAPT                  0.008   microtubule-associated protein tau isoform 6 
PCLO                  0.007   piccolo isoform 2 
PCLO                  0.007   piccolo isoform 1 
AFF1                  0.007   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
CASKIN2               0.007   cask-interacting protein 2 isoform b 
CASKIN2               0.007   cask-interacting protein 2 isoform a 
NACA                  0.007   nascent polypeptide-associated complex alpha subuni...
TCOF1                 0.007   Treacher Collins-Franceschetti syndrome 1 isoform a ...
PRG4                  0.006   proteoglycan 4 isoform D 
PRG4                  0.006   proteoglycan 4 isoform C 
PRG4                  0.006   proteoglycan 4 isoform B 
PRG4                  0.006   proteoglycan 4 isoform A 
FAM22E                0.006   PREDICTED: hypothetical protein 
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform b ...
SYNPO2L               0.006   synaptopodin 2-like isoform a 
SYNPO2L               0.006   synaptopodin 2-like isoform b 
PSRC1                 0.006   proline/serine-rich coiled-coil 1 isoform a 
PSRC1                 0.006   proline/serine-rich coiled-coil 1 isoform a 
LOC100130128          0.006   PREDICTED: hypothetical protein 
LOC100130128          0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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