Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM22E Sequence: fasta or formatted (878aa) NCBI GI: 239744140
Description:

PREDICTED: hypothetical protein

Referenced in:

Testes and Sperm

Other entries for this name:
alt prot [629aa] PREDICTED: hypothetical protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         73           3
 C cysteine            2.5         22           2
 D aspartate           2.7         24           2
 E glutamate           6.8         60           4
 F phenylalanine       2.6         23           1
 G glycine             8.8         77           2
 H histidine           2.1         18           1
 I isoleucine          0.9          8           1
 K lysine              4.6         40           2
 L leucine            10.4         91           3
 M methionine          1.8         16           1
 N asparagine          1.5         13           1
 P proline            13.7        120           6
 Q glutamine           6.5         57           1
 R arginine            5.4         47           2
 S serine              8.8         77           4
 T threonine           4.9         43           2
 V valine              5.5         48           2
 W tryptophan          1.5         13           2
 Y tyrosine            0.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
FAM22B                0.989   PREDICTED: hypothetical protein isoform 1 
FAM22A                0.976   hypothetical protein LOC728118 
FAM22E                0.702   PREDICTED: hypothetical protein isoform 1 
FAM22F                0.701   hypothetical protein LOC54754 
FAM22D                0.594   hypothetical protein LOC728130 
FAM22G                0.468   hypothetical protein LOC441457 
C15orf55              0.247   nuclear protein in testis 
MLL4                  0.018   myeloid/lymphoid or mixed-lineage leukemia 4 
TTN                   0.016   titin isoform N2-A 
PCLO                  0.016   piccolo isoform 2 
PCLO                  0.016   piccolo isoform 1 
NACAD                 0.015   NAC alpha domain containing 
NACAD                 0.015   PREDICTED: NAC alpha domain containing 
SAMD1                 0.015   sterile alpha motif domain containing 1 
TNK2                  0.015   tyrosine kinase, non-receptor, 2 isoform 2 
NACAD                 0.014   PREDICTED: NAC alpha domain containing 
NACAD                 0.014   PREDICTED: NAC alpha domain containing 
NACAD                 0.014   PREDICTED: NAC alpha domain containing 
PELP1                 0.014   proline, glutamic acid and leucine rich protein 1 [...
MLL2                  0.013   myeloid/lymphoid or mixed-lineage leukemia 2 
WBP11                 0.013   WW domain binding protein 11 
KIAA1671              0.013   hypothetical protein LOC85379 
LOC100289134          0.013   PREDICTED: hypothetical protein XP_002343933 
SRCAP                 0.013   Snf2-related CBP activator protein 
PRG4                  0.012   proteoglycan 4 isoform D 
PRG4                  0.012   proteoglycan 4 isoform C 
PRG4                  0.012   proteoglycan 4 isoform B 
PRG4                  0.012   proteoglycan 4 isoform A 
TNK2                  0.012   tyrosine kinase, non-receptor, 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press