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Search of human proteins with 115387106
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|115387106 neuroblastoma, suppression of tumorigenicity 1 1
[Homo sapiens]
(216 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|115387106 neuroblastoma, suppression of tumorigenicity 1 1 [H... 465 e-131
gi|4885509 neuroblastoma, suppression of tumorigenicity 1 2 prec... 392 e-109
gi|71164892 gremlin 2 precursor [Homo sapiens] 72 4e-13
gi|7019349 gremlin-1 precursor [Homo sapiens] 63 2e-10
gi|22749329 dante precursor [Homo sapiens] 54 8e-08
gi|4885135 cerberus 1 [Homo sapiens] 50 2e-06
gi|83977459 pleckstrin homology-like domain, family A, member 1 ... 46 2e-05
gi|12751477 forkhead box L2 [Homo sapiens] 39 0.003
gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens] 38 0.007
gi|23510413 sorting nexin 26 [Homo sapiens] 37 0.017
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 36 0.022
gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens] 35 0.037
gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens] 35 0.037
gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens] 35 0.037
gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens] 35 0.037
gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens] 35 0.037
gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens] 35 0.037
gi|148613882 homeobox A4 [Homo sapiens] 35 0.049
gi|120952764 mastermind-like domain containing 1 [Homo sapiens] 35 0.063
gi|45827729 scribble isoform b [Homo sapiens] 35 0.063
gi|45827731 scribble isoform a [Homo sapiens] 35 0.063
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 34 0.083
gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [... 34 0.11
gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [... 34 0.11
gi|61966923 forkhead box B2 [Homo sapiens] 34 0.11
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 33 0.14
gi|21314684 single stranded DNA binding protein 3 isoform b [Hom... 33 0.14
gi|239757704 PREDICTED: hypothetical protein XP_002345526 [Homo ... 33 0.18
gi|239752189 PREDICTED: hypothetical protein [Homo sapiens] 33 0.18
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 33 0.18
>gi|115387106 neuroblastoma, suppression of tumorigenicity 1 1 [Homo
sapiens]
Length = 216
Score = 465 bits (1196), Expect = e-131
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 1 MPGNLMSQTSRAVSIWKFPAKLGKTHGHRALEATGMMLRVLVGAVLPAMLLAAPPPINKL 60
MPGNLMSQTSRAVSIWKFPAKLGKTHGHRALEATGMMLRVLVGAVLPAMLLAAPPPINKL
Sbjct: 1 MPGNLMSQTSRAVSIWKFPAKLGKTHGHRALEATGMMLRVLVGAVLPAMLLAAPPPINKL 60
Query: 61 ALFPDKSAWCEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSC 120
ALFPDKSAWCEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSC
Sbjct: 61 ALFPDKSAWCEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSC 120
Query: 121 MPAQSMWEIVTLECPGHEEVPRVDKLVEKILHCSCQACGKEPSHEGLSVYVQGEDGPGSQ 180
MPAQSMWEIVTLECPGHEEVPRVDKLVEKILHCSCQACGKEPSHEGLSVYVQGEDGPGSQ
Sbjct: 121 MPAQSMWEIVTLECPGHEEVPRVDKLVEKILHCSCQACGKEPSHEGLSVYVQGEDGPGSQ 180
Query: 181 PGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAED 216
PGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAED
Sbjct: 181 PGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAED 216
>gi|4885509 neuroblastoma, suppression of tumorigenicity 1 2
precursor [Homo sapiens]
Length = 180
Score = 392 bits (1006), Expect = e-109
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 37 MLRVLVGAVLPAMLLAAPPPINKLALFPDKSAWCEAKNITQIVGHSGCEAKSIQNRACLG 96
MLRVLVGAVLPAMLLAAPPPINKLALFPDKSAWCEAKNITQIVGHSGCEAKSIQNRACLG
Sbjct: 1 MLRVLVGAVLPAMLLAAPPPINKLALFPDKSAWCEAKNITQIVGHSGCEAKSIQNRACLG 60
Query: 97 QCFSYSVPNTFPQSTESLVHCDSCMPAQSMWEIVTLECPGHEEVPRVDKLVEKILHCSCQ 156
QCFSYSVPNTFPQSTESLVHCDSCMPAQSMWEIVTLECPGHEEVPRVDKLVEKILHCSCQ
Sbjct: 61 QCFSYSVPNTFPQSTESLVHCDSCMPAQSMWEIVTLECPGHEEVPRVDKLVEKILHCSCQ 120
Query: 157 ACGKEPSHEGLSVYVQGEDGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAED 216
ACGKEPSHEGLSVYVQGEDGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAED
Sbjct: 121 ACGKEPSHEGLSVYVQGEDGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAED 180
>gi|71164892 gremlin 2 precursor [Homo sapiens]
Length = 168
Score = 72.0 bits (175), Expect = 4e-13
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 66 KSAWCEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSCMPAQS 125
KS WC+ + + Q V GC +++I NR C GQC S+ +P + ES C C P +
Sbjct: 69 KSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSCAFCKPQRV 128
Query: 126 MWEIVTLECPGHEEVPRVDKLVEKILHCSCQA 157
+V LECPG + R+ K ++K+ C C +
Sbjct: 129 TSVLVELECPGLDPPFRLKK-IQKVKQCRCMS 159
>gi|7019349 gremlin-1 precursor [Homo sapiens]
Length = 184
Score = 62.8 bits (151), Expect = 2e-10
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 66 KSAWCEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSCMPAQS 125
K WC+ + + Q + GC +++I NR C GQC S+ +P + S C C P +
Sbjct: 90 KRDWCKTQPLKQTIHEEGCNSRTIINRFCYGQCNSFYIPRHIRKEEGSFQSCSFCKPKKF 149
Query: 126 MWEIVTLECPGHEEVPRVDKLVEKILHCSC 155
+VTL CP + P K V ++ C C
Sbjct: 150 TTMMVTLNCP-ELQPPTKKKRVTRVKQCRC 178
>gi|22749329 dante precursor [Homo sapiens]
Length = 189
Score = 54.3 bits (129), Expect = 8e-08
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 70 CEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSCMPAQSMWEI 129
C+A Q+ GC A ++N C G C S +P + P LV C+SCMPA+ W
Sbjct: 101 CKAVPFVQVFSRPGCSAIRLRNHLCFGHCSSLYIPGSDP---TPLVLCNSCMPARKRWAP 157
Query: 130 VTLECPGHEEVPR----VDKLVEKILHCSCQA 157
V L C R + ++ + HCS +A
Sbjct: 158 VVLWCLTGSSASRRRVKISTMLIEGCHCSPKA 189
>gi|4885135 cerberus 1 [Homo sapiens]
Length = 267
Score = 49.7 bits (117), Expect = 2e-06
Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 56 PINKLALFPDKSA---W--CEAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQS 110
P ++ + P KS W C +Q + H GCE +QN C G+C S P S
Sbjct: 143 PASQGVILPIKSHEVHWETCRTVPFSQTITHEGCEKVVVQNNLCFGKCGSVHFPGAAQHS 202
Query: 111 TESLVHCDSCMPAQSMWEIVTLECPGHEEVPRVDKLVEKILHCSCQACGKEPSHEGLSVY 170
S C C+PA+ + L C V +V LVE+ CQ K +G ++
Sbjct: 203 HTS---CSHCLPAKFTTMHLPLNCTELSSVIKVVMLVEE-----CQCKVKTEHEDGHILH 254
Query: 171 VQGED 175
+D
Sbjct: 255 AGSQD 259
>gi|83977459 pleckstrin homology-like domain, family A, member 1
[Homo sapiens]
Length = 401
Score = 46.2 bits (108), Expect = 2e-05
Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 161 EPSHEGLSVYVQGEDGPGSQPGTHPHPHPHPHPGGQTPEPE-DPPGAPH 208
+P + L Y P S P +HPHPHPHPHP Q P P P PH
Sbjct: 342 KPQPQQLHPYPHPHPHPHSHPHSHPHPHPHPHP-HQIPHPHPQPHSQPH 389
Score = 40.0 bits (92), Expect = 0.002
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 177 PGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEG 213
P P +HPH HPHPHP + P PH++ G
Sbjct: 354 PHPHPHSHPHSHPHPHPHPHPHQIPHPHPQPHSQPHG 390
Score = 35.4 bits (80), Expect = 0.037
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 172 QGEDGPGSQPGT-HPHPHPHPHPGGQTPEPEDPPGAPHTEE 211
Q + P QP HP+PHPHPHP P PH +
Sbjct: 336 QPQPQPKPQPQQLHPYPHPHPHPHSHPHSHPHPHPHPHPHQ 376
Score = 30.8 bits (68), Expect = 0.92
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 172 QGEDGPGSQPGTHP---------HPHPHPHPGGQTPEPEDPPGAPH 208
Q + P SQP P HP+PHPHP + P PH
Sbjct: 326 QPQPQPQSQPQPQPQPKPQPQQLHPYPHPHPHPHSHPHSHPHPHPH 371
Score = 28.9 bits (63), Expect = 3.5
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 172 QGEDGPGSQPGTHPHPHPHPHPGGQTPEPEDPP 204
Q + P QP P P P P P Q P+P+ P
Sbjct: 310 QPQPQPQLQPQPQPQPQPQPQPQSQ-PQPQPQP 341
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 38.9 bits (89), Expect = 0.003
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 173 GEDGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPH 208
G GP + P PHPHPHPH PP PH
Sbjct: 276 GLGGPPAAPPPPPHPHPHPHAHHLHAAAAPPPAPPH 311
>gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens]
Length = 1247
Score = 37.7 bits (86), Expect = 0.007
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 173 GEDGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHTE 210
G GPG +P P P P P P PEPE PGA +E
Sbjct: 5 GAAGPGPEPEPEPEPEPEPAP---EPEPEPKPGAGTSE 39
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 36.6 bits (83), Expect = 0.017
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 154 SCQACG------KEPSHEGLSVYVQGEDGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAP 207
S Q CG + P H LS+ V GE P G+ P P+ HPG P P PP P
Sbjct: 755 SQQECGGTPPASQSPFHRSLSLEVGGE--PLGTSGSGPPPNSLAHPGAWVPGP--PPYLP 810
Query: 208 HTEEEGA 214
+ +G+
Sbjct: 811 RQQSDGS 817
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 36.2 bits (82), Expect = 0.022
Identities = 22/56 (39%), Positives = 22/56 (39%), Gaps = 16/56 (28%)
Query: 168 SVYVQGEDGPGSQP-GTHPH---------------PHPHPHPGGQTPEPEDPPGAP 207
S V G G G QP G H H PHPH HP Q P P P G P
Sbjct: 194 SFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQGPP 249
Score = 32.3 bits (72), Expect = 0.31
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 181 PGTHPHPHPHPHPGGQTPEPEDPPGAP--HTEEEGAED 216
P H HPH P P P P+ PPG P H + ED
Sbjct: 229 PHPHSHPHQQPPP---PPPPQGPPGHPGAHHDPHSDED 263
>gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
Length = 397
Score = 35.4 bits (80), Expect = 0.037
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 183 THPHPHPHPHPGGQTPEPED-----PPGAPHTEEEGAE 215
T PHPHP P GQT PE PP H+E+ A+
Sbjct: 42 TAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPAD 79
>gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]
Length = 370
Score = 35.4 bits (80), Expect = 0.037
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 183 THPHPHPHPHPGGQTPEPED-----PPGAPHTEEEGAE 215
T PHPHP P GQT PE PP H+E+ A+
Sbjct: 42 TAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPAD 79
>gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]
Length = 395
Score = 35.4 bits (80), Expect = 0.037
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 183 THPHPHPHPHPGGQTPEPED-----PPGAPHTEEEGAE 215
T PHPHP P GQT PE PP H+E+ A+
Sbjct: 62 TAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPAD 99
>gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens]
Length = 392
Score = 35.4 bits (80), Expect = 0.037
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 183 THPHPHPHPHPGGQTPEPED-----PPGAPHTEEEGAE 215
T PHPHP P GQT PE PP H+E+ A+
Sbjct: 62 TAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPAD 99
>gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens]
Length = 418
Score = 35.4 bits (80), Expect = 0.037
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 183 THPHPHPHPHPGGQTPEPED-----PPGAPHTEEEGAE 215
T PHPHP P GQT PE PP H+E+ A+
Sbjct: 62 TAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPAD 99
>gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
Length = 397
Score = 35.4 bits (80), Expect = 0.037
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 183 THPHPHPHPHPGGQTPEPED-----PPGAPHTEEEGAE 215
T PHPHP P GQT PE PP H+E+ A+
Sbjct: 42 TAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPAD 79
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 35.0 bits (79), Expect = 0.049
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 177 PGSQPGTHPHPHPHPHPGGQTPEP 200
PG PH HPHPHP TP P
Sbjct: 294 PGKAQTQSPHLHPHPHPSTSTPVP 317
>gi|120952764 mastermind-like domain containing 1 [Homo sapiens]
Length = 774
Score = 34.7 bits (78), Expect = 0.063
Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 12/113 (10%)
Query: 100 SYSVPNTFPQ---STESLVHCDSCMPAQSMWEIVTLECPGHEEVPRVDKLVEKILHCSCQ 156
SYS+P+T Q + S+ S + A + L P ++ L + +
Sbjct: 261 SYSIPSTSKQIVSPSSSMAQSKSQVQAMLPVALPPLPVPQWHHAHQLKALAASKQGSATK 320
Query: 157 ACGKEPSHEGLSVYVQGEDGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHT 209
G PS GL PG P P P PHP P P P PP +P +
Sbjct: 321 QQGPTPSWSGLPP-------PGLSPPYRPVPSPHPPPLPLPPPP--PPFSPQS 364
>gi|45827729 scribble isoform b [Homo sapiens]
Length = 1630
Score = 34.7 bits (78), Expect = 0.063
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 160 KEPSHEGLSVYVQGE----DGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAE 215
K P E + +QG +GP + G H PH P Q E E+ G+P EEE E
Sbjct: 618 KLPQPEAVVALLQGMQPDGEGPVAPGGWHNGPHAPWAPRAQKEEEEEEEGSPQEEEEEEE 677
Query: 216 D 216
+
Sbjct: 678 E 678
>gi|45827731 scribble isoform a [Homo sapiens]
Length = 1655
Score = 34.7 bits (78), Expect = 0.063
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 160 KEPSHEGLSVYVQGE----DGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAE 215
K P E + +QG +GP + G H PH P Q E E+ G+P EEE E
Sbjct: 618 KLPQPEAVVALLQGMQPDGEGPVAPGGWHNGPHAPWAPRAQKEEEEEEEGSPQEEEEEEE 677
Query: 216 D 216
+
Sbjct: 678 E 678
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 34.3 bits (77), Expect = 0.083
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 175 DGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAP 207
+ PG+ P P P P P P Q P P PP P
Sbjct: 12 ESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPP 44
Score = 33.1 bits (74), Expect = 0.18
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 173 GEDGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEG 213
G PG PG P P P P P P+ + PP P G
Sbjct: 6 GGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPG 46
Score = 27.7 bits (60), Expect = 7.8
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 177 PGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAED 216
P QP P P P P PG P+ PP A E A++
Sbjct: 31 PQQQPPPPPPPAPPPGPG--PAPPQHPPRAEALPPEAADE 68
>gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3
[Homo sapiens]
Length = 650
Score = 33.9 bits (76), Expect = 0.11
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 180 QPGTHPHPHPHPHPGGQTPEPEDPPGAP 207
QP P P P P P Q P P PP AP
Sbjct: 378 QPPPQPQPPPPPPPASQQPPPPPPPQAP 405
>gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1
[Homo sapiens]
Length = 634
Score = 33.9 bits (76), Expect = 0.11
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 180 QPGTHPHPHPHPHPGGQTPEPEDPPGAP 207
QP P P P P P Q P P PP AP
Sbjct: 362 QPPPQPQPPPPPPPASQQPPPPPPPQAP 389
>gi|61966923 forkhead box B2 [Homo sapiens]
Length = 432
Score = 33.9 bits (76), Expect = 0.11
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 16/51 (31%)
Query: 174 EDGPGSQPGTHPHPHPHPHPGGQ----------------TPEPEDPPGAPH 208
+ PG+ PG H HPH H HP P P PP PH
Sbjct: 125 KSAPGAGPGGHLHPHHHHHPHHHHHHHAAAHHHHHHHPPQPPPPPPPPPPH 175
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 33.5 bits (75), Expect = 0.14
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 164 HEGLSVYVQGEDGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPH 208
H G+S GP HPH P G P P PPG PH
Sbjct: 303 HPGMSQMQLAHHGPHGLG----HPHAGPPGSGGQPPPRPPPGMPH 343
Score = 31.6 bits (70), Expect = 0.54
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 177 PGSQPGTHPHPHPHPHPGGQTPEP 200
PG+ H H HPHP P G P P
Sbjct: 281 PGAGHPGHGHSHPHPFPPGGMPHP 304
>gi|21314684 single stranded DNA binding protein 3 isoform b [Homo
sapiens]
Length = 368
Score = 33.5 bits (75), Expect = 0.14
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 177 PGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHTE 210
PGSQP H P PH P + P G P T+
Sbjct: 125 PGSQPSPHAQPPPHNPSSMMGPHSQPPGGVPGTQ 158
>gi|239757704 PREDICTED: hypothetical protein XP_002345526 [Homo
sapiens]
Length = 67
Score = 33.1 bits (74), Expect = 0.18
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 180 QPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAE 215
+PG PHP PH GG+ PE PG+ + GAE
Sbjct: 13 RPGPLQKPHPQPHDGGRRPEGPG-PGSGDGDGGGAE 47
>gi|239752189 PREDICTED: hypothetical protein [Homo sapiens]
Length = 67
Score = 33.1 bits (74), Expect = 0.18
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 180 QPGTHPHPHPHPHPGGQTPEPEDPPGAPHTEEEGAE 215
+PG PHP PH GG+ PE PG+ + GAE
Sbjct: 13 RPGPLQKPHPQPHDGGRRPEGPG-PGSGDGDGGGAE 47
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 33.1 bits (74), Expect = 0.18
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 175 DGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAP 207
+GP + PG P P PH P G+ +PE P AP
Sbjct: 414 EGPAAWPGGAPTP-PHARPTGRRQDPEPGPRAP 445
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,761,127
Number of Sequences: 37866
Number of extensions: 704609
Number of successful extensions: 7205
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 203
Number of HSP's that attempted gapping in prelim test: 5526
Number of HSP's gapped (non-prelim): 1489
length of query: 216
length of database: 18,247,518
effective HSP length: 98
effective length of query: 118
effective length of database: 14,536,650
effective search space: 1715324700
effective search space used: 1715324700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.