Guide to the Human Genome
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Name: LPIN1 Sequence: fasta or formatted (890aa) NCBI GI: 22027648
Description:

lipin 1

Referenced in:

Adipose Tissue
Lipid Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         53           3
 C cysteine            1.3         12           1
 D aspartate           6.4         57           2
 E glutamate           6.2         55           2
 F phenylalanine       3.4         30           2
 G glycine             5.8         52           2
 H histidine           2.4         21           1
 I isoleucine          4.2         37           2
 K lysine              6.5         58           2
 L leucine             8.9         79           3
 M methionine          2.2         20           1
 N asparagine          4.3         38           1
 P proline             7.2         64           2
 Q glutamine           4.4         39           2
 R arginine            4.9         44           3
 S serine             11.2        100           4
 T threonine           5.3         47           2
 V valine              5.8         52           2
 W tryptophan          1.3         12           2
 Y tyrosine            2.2         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lipin 1 
LPIN2                 0.475   lipin 2 
LPIN3                 0.408   lipin 3 
CRKRS                 0.011   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.011   Cdc2-related kinase, arginine/serine-rich isoform 1...
MDC1                  0.009   mediator of DNA-damage checkpoint 1 
SLC4A1AP              0.009   solute carrier family 4 (anion exchanger), member 1...
MLL                   0.008   myeloid/lymphoid or mixed-lineage leukemia protein [...
ANK2                  0.008   ankyrin 2 isoform 1 
MLLT1                 0.008   myeloid/lymphoid or mixed-lineage leukemia (trithora...
PRG4                  0.008   proteoglycan 4 isoform D 
PRG4                  0.008   proteoglycan 4 isoform C 
PRG4                  0.008   proteoglycan 4 isoform B 
PRG4                  0.008   proteoglycan 4 isoform A 
RSF1                  0.008   remodeling and spacing factor 1 
AP3D1                 0.008   adaptor-related protein complex 3, delta 1 subunit ...
LOC645971             0.008   PREDICTED: similar to hCG2036794 
LOC645971             0.008   PREDICTED: similar to hCG2036794 
LOC645971             0.008   PREDICTED: similar to hCG2036794 
MYST3                 0.007   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.007   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.007   MYST histone acetyltransferase (monocytic leukemia)...
AP3D1                 0.007   adaptor-related protein complex 3, delta 1 subunit ...
INCENP                0.007   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.007   inner centromere protein antigens 135/155kDa isofor...
ACIN1                 0.007   apoptotic chromatin condensation inducer 1 
PRUNE2                0.007   prune homolog 2 
DSPP                  0.007   dentin sialophosphoprotein preproprotein 
SETD2                 0.006   SET domain containing 2 
RBM17                 0.006   RNA binding motif protein 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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