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Search of human proteins with 22027622
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22027622 TNF receptor-associated factor 4 [Homo sapiens]
(470 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22027622 TNF receptor-associated factor 4 [Homo sapiens] 1008 0.0
gi|22027612 TNF receptor-associated factor 2 [Homo sapiens] 213 4e-55
gi|22027630 TNF receptor-associated factor 6 [Homo sapiens] 174 2e-43
gi|4759254 TNF receptor-associated factor 6 [Homo sapiens] 174 2e-43
gi|22027616 TNF receptor-associated factor 3 isoform 1 [Homo sap... 157 2e-38
gi|22027618 TNF receptor-associated factor 3 isoform 1 [Homo sap... 157 2e-38
gi|22027627 TNF receptor-associated factor 5 [Homo sapiens] 134 2e-31
gi|77404348 TNF receptor-associated factor 5 [Homo sapiens] 134 2e-31
gi|11321603 TNF receptor-associated factor 5 [Homo sapiens] 134 2e-31
gi|22027620 TNF receptor-associated factor 3 isoform 2 [Homo sap... 128 1e-29
gi|5032193 TNF receptor-associated factor 1 [Homo sapiens] 128 1e-29
gi|37588861 ring finger protein 41 isoform 1 [Homo sapiens] 70 5e-12
gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens] 70 5e-12
gi|87241872 ring finger protein 151 [Homo sapiens] 69 9e-12
gi|45594312 TNF receptor-associated factor 7 [Homo sapiens] 69 1e-11
gi|30520320 ring finger protein 166 [Homo sapiens] 62 9e-10
gi|153070264 meprin A beta [Homo sapiens] 59 1e-08
gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens] 57 3e-08
gi|40288191 XIAP associated factor 1 isoform 1 [Homo sapiens] 53 7e-07
gi|153070262 meprin A alpha [Homo sapiens] 52 9e-07
gi|37622343 zinc finger protein 266 [Homo sapiens] 49 8e-06
gi|37622349 zinc finger protein 266 [Homo sapiens] 49 8e-06
gi|8923898 zinc finger protein 313 [Homo sapiens] 49 1e-05
gi|40288193 XIAP associated factor 1 isoform 2 [Homo sapiens] 49 1e-05
gi|24025688 ligand of numb-protein X 2 [Homo sapiens] 49 1e-05
gi|14249488 zinc finger and SCAN domain containing 10 [Homo sapi... 47 5e-05
gi|21483182 zinc finger with KRAB and SCAN domains 5 [Homo sapiens] 45 1e-04
gi|11036642 zinc finger with KRAB and SCAN domains 5 [Homo sapiens] 45 1e-04
gi|219879806 TRAF-type zinc finger domain containing 1 [Homo sap... 45 1e-04
gi|5729828 TRAF-type zinc finger domain containing 1 [Homo sapiens] 45 1e-04
>gi|22027622 TNF receptor-associated factor 4 [Homo sapiens]
Length = 470
Score = 1008 bits (2606), Expect = 0.0
Identities = 470/470 (100%), Positives = 470/470 (100%)
Query: 1 MPGFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLP 60
MPGFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLP
Sbjct: 1 MPGFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLP 60
Query: 61 LDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMK 120
LDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMK
Sbjct: 61 LDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMK 120
Query: 121 LSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLL 180
LSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLL
Sbjct: 121 LSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLL 180
Query: 181 AQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLK 240
AQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLK
Sbjct: 181 AQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLK 240
Query: 241 DSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQRQELQELRRELE 300
DSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQRQELQELRRELE
Sbjct: 241 DSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQRQELQELRRELE 300
Query: 301 ELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEG 360
ELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEG
Sbjct: 301 ELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEG 360
Query: 361 THLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKP 420
THLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKP
Sbjct: 361 THLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKP 420
Query: 421 GTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVELPRKILS 470
GTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVELPRKILS
Sbjct: 421 GTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVELPRKILS 470
>gi|22027612 TNF receptor-associated factor 2 [Homo sapiens]
Length = 501
Score = 213 bits (541), Expect = 4e-55
Identities = 148/498 (29%), Positives = 227/498 (45%), Gaps = 51/498 (10%)
Query: 2 PGFDYKFL-EKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCP----- 55
PGF L K + + LC C +R P Q CGHR+C CL LS G C
Sbjct: 17 PGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQ-CGHRYCSFCLASILSSGPQNCAACVHE 75
Query: 56 ----EDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQG-HLNTCSFNV 110
E L+ + +PD +V LP C +GC W G L+ + H C +
Sbjct: 76 GIYEEGISILESSSAFPDNAARREVESLPAVC--PSDGCTWKGTLKEYESCHEGRCPLML 133
Query: 111 IPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENK 170
CP C + + HL+H+CP+R L C C G ++H +CP+ + C+
Sbjct: 134 TECP-ACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHEVCPKFPLTCDG- 191
Query: 171 CGARMMRRLLAQHATSECPKRTQPCTY----CTKEFVFDTIQSHQYQCPRLPVAC----- 221
CG + + R Q C K PC + C + + Q H+ Q R +A
Sbjct: 192 CGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWLREHLAMLLSSV 251
Query: 222 -------PNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCPKLAMARHVE--- 271
+Q G+ + K + ++C + A +R
Sbjct: 252 LEAKPLLGDQSHAGSELLQRCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQ 311
Query: 272 ---ESVKPHLAMMCALVSRQRQELQELRRELEELSVGS-DGVLIWKIGSYGRRLQEAKAK 327
E++ + + + + + +L +++ E+ + DGV IWKI + R+ QEA A
Sbjct: 312 DKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAG 371
Query: 328 PNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVT 387
FSPAFYT +YGYK+ + +LNG+G+G GTHLSL+ V+ G D LL WPF ++VT
Sbjct: 372 RIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVT 431
Query: 388 FSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRK 447
LLDQ++ +HV + F PD +FQ+P +++ ++ G P F +
Sbjct: 432 LMLLDQNN-----REHVIDAFRPDVTSSSFQRP------VNDMNIASGCPLFCPVSKMEA 480
Query: 448 RN-YVRDDAVFIRAAVEL 464
+N YVRDDA+FI+A V+L
Sbjct: 481 KNSYVRDDAIFIKAIVDL 498
>gi|22027630 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 174 bits (441), Expect = 2e-43
Identities = 130/512 (25%), Positives = 209/512 (40%), Gaps = 119/512 (23%)
Query: 3 GFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLD 62
G+D +F + + CP+C +RE VQ + CGHRFC C+ + + + KCP D L
Sbjct: 55 GYDVEFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILL 113
Query: 63 YAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLS 122
+++PD + ++L L ++C EGC LRHL+
Sbjct: 114 ENQLFPDNFAKREILSLMVKC--PNEGCLHKMELRHLE---------------------- 149
Query: 123 RRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLLAQ 182
D AH CEF D CPQ C + +
Sbjct: 150 --DHQAH-----------CEFALMD------------CPQ--------CQRPFQKFHINI 176
Query: 183 HATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDS 242
H +CP+R C C F+ + H CP V C C + RE +P H
Sbjct: 177 HILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVIC-EYCNT-ILIREQMPNHYDLD 234
Query: 243 CNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVS---------------- 286
C TA + C F GC + + +ARH++E+ + H+ M+ V
Sbjct: 235 CPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRN 294
Query: 287 -------------RQRQELQELRRELEELSV----------------------GSDGVLI 311
RQ +++EL ++E S+ +G+ I
Sbjct: 295 FQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYI 354
Query: 312 WKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLN-GNGSGEGTHLSLYIRVL 370
WKIG++G L+ + + + SP FYT K GYKL + L ++SL++ +
Sbjct: 355 WKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTM 414
Query: 371 PGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDES 430
G +D+ L WPF + ++LDQS+ + Q+ E P FQ+P ++ +
Sbjct: 415 QGEYDSHLPWPFQGTIRLTILDQSEAPVR--QNHEEIMDAKPELLAFQRP-----TIPRN 467
Query: 431 SLGFGYPKFISHQDIRKRNYVRDDAVFIRAAV 462
GFGY F+ + +R+R +++DD + +R V
Sbjct: 468 PKGFGYVTFMHLEALRQRTFIKDDTLLVRCEV 499
>gi|4759254 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 174 bits (441), Expect = 2e-43
Identities = 130/512 (25%), Positives = 209/512 (40%), Gaps = 119/512 (23%)
Query: 3 GFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLD 62
G+D +F + + CP+C +RE VQ + CGHRFC C+ + + + KCP D L
Sbjct: 55 GYDVEFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILL 113
Query: 63 YAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLS 122
+++PD + ++L L ++C EGC LRHL+
Sbjct: 114 ENQLFPDNFAKREILSLMVKC--PNEGCLHKMELRHLE---------------------- 149
Query: 123 RRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLLAQ 182
D AH CEF D CPQ C + +
Sbjct: 150 --DHQAH-----------CEFALMD------------CPQ--------CQRPFQKFHINI 176
Query: 183 HATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDS 242
H +CP+R C C F+ + H CP V C C + RE +P H
Sbjct: 177 HILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVIC-EYCNT-ILIREQMPNHYDLD 234
Query: 243 CNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVS---------------- 286
C TA + C F GC + + +ARH++E+ + H+ M+ V
Sbjct: 235 CPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRN 294
Query: 287 -------------RQRQELQELRRELEELSV----------------------GSDGVLI 311
RQ +++EL ++E S+ +G+ I
Sbjct: 295 FQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYI 354
Query: 312 WKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLN-GNGSGEGTHLSLYIRVL 370
WKIG++G L+ + + + SP FYT K GYKL + L ++SL++ +
Sbjct: 355 WKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTM 414
Query: 371 PGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDES 430
G +D+ L WPF + ++LDQS+ + Q+ E P FQ+P ++ +
Sbjct: 415 QGEYDSHLPWPFQGTIRLTILDQSEAPVR--QNHEEIMDAKPELLAFQRP-----TIPRN 467
Query: 431 SLGFGYPKFISHQDIRKRNYVRDDAVFIRAAV 462
GFGY F+ + +R+R +++DD + +R V
Sbjct: 468 PKGFGYVTFMHLEALRQRTFIKDDTLLVRCEV 499
>gi|22027616 TNF receptor-associated factor 3 isoform 1 [Homo
sapiens]
Length = 568
Score = 157 bits (398), Expect = 2e-38
Identities = 140/544 (25%), Positives = 235/544 (43%), Gaps = 103/544 (18%)
Query: 3 GFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLD 62
G+ KF++ + + C C + P Q CGHRFC++C+ LS KC Q +
Sbjct: 38 GYKEKFVKTVEDKYKCEKCHLVLCSPKQTE-CGHRFCESCMAALLSSSSPKCTACQESIV 96
Query: 63 YAKIYPDPELEVQVLGLPIRCI-------------------------------------- 84
K++ D + ++L L I C
Sbjct: 97 KDKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEK 156
Query: 85 --------HSEEGCRWSG----------PLRHLQGHLNT-CSFNVIPCPNRCPMK-LSRR 124
H E+ C++ P+ LQ H +T C V+ CP++C ++ L R
Sbjct: 157 VLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHEDTDCPCVVVSCPHKCSVQTLLRS 216
Query: 125 DLPAHLQHDCPKRRLKCEF--CGCDFSG--EAYESHEGMCPQESVYCENKCGARMMRRL- 179
+L AHL +C C F GC F G + ++HE + V + + +++
Sbjct: 217 ELSAHLS-ECVNAPSTCSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVS 275
Query: 180 LAQHATSECPKRTQPC--TYCTKEFVFDT----IQSHQYQCPRLPVACPNQCG-VGTVAR 232
L Q+ + E K Q C+ E + +++++ + L +Q + + +
Sbjct: 276 LLQNESVEKNKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDK 335
Query: 233 EDLPGHLK----DSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQ 288
E P DS +++ ++R +L V + ++ + +SR
Sbjct: 336 EIRPFRQNWEEADSMKSSV-------ESLQNRVTELESVDKSAGQVARNTGLLESQLSRH 388
Query: 289 RQELQ---------ELRRELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYT 339
Q L +LR ++ E + +GVLIWKI Y RR QEA L +S FYT
Sbjct: 389 DQMLSVHDIRLADMDLRFQVLE-TASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYT 447
Query: 340 HKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLA 399
+GYK+ +LNG+G G+GTHLSL+ ++ G +D LL WPF ++VT L+DQ +
Sbjct: 448 GYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQG----S 503
Query: 400 KPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIR 459
+H+ + F PDPN +F+KP E ++ G P F++ + Y++DD +FI+
Sbjct: 504 SRRHLGDAFKPDPNSSSFKKP------TGEMNIASGCPVFVAQTVLENGTYIKDDTIFIK 557
Query: 460 AAVE 463
V+
Sbjct: 558 VIVD 561
>gi|22027618 TNF receptor-associated factor 3 isoform 1 [Homo
sapiens]
Length = 568
Score = 157 bits (398), Expect = 2e-38
Identities = 140/544 (25%), Positives = 235/544 (43%), Gaps = 103/544 (18%)
Query: 3 GFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLD 62
G+ KF++ + + C C + P Q CGHRFC++C+ LS KC Q +
Sbjct: 38 GYKEKFVKTVEDKYKCEKCHLVLCSPKQTE-CGHRFCESCMAALLSSSSPKCTACQESIV 96
Query: 63 YAKIYPDPELEVQVLGLPIRCI-------------------------------------- 84
K++ D + ++L L I C
Sbjct: 97 KDKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEK 156
Query: 85 --------HSEEGCRWSG----------PLRHLQGHLNT-CSFNVIPCPNRCPMK-LSRR 124
H E+ C++ P+ LQ H +T C V+ CP++C ++ L R
Sbjct: 157 VLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHEDTDCPCVVVSCPHKCSVQTLLRS 216
Query: 125 DLPAHLQHDCPKRRLKCEF--CGCDFSG--EAYESHEGMCPQESVYCENKCGARMMRRL- 179
+L AHL +C C F GC F G + ++HE + V + + +++
Sbjct: 217 ELSAHLS-ECVNAPSTCSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVS 275
Query: 180 LAQHATSECPKRTQPC--TYCTKEFVFDT----IQSHQYQCPRLPVACPNQCG-VGTVAR 232
L Q+ + E K Q C+ E + +++++ + L +Q + + +
Sbjct: 276 LLQNESVEKNKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDK 335
Query: 233 EDLPGHLK----DSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQ 288
E P DS +++ ++R +L V + ++ + +SR
Sbjct: 336 EIRPFRQNWEEADSMKSSV-------ESLQNRVTELESVDKSAGQVARNTGLLESQLSRH 388
Query: 289 RQELQ---------ELRRELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYT 339
Q L +LR ++ E + +GVLIWKI Y RR QEA L +S FYT
Sbjct: 389 DQMLSVHDIRLADMDLRFQVLE-TASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYT 447
Query: 340 HKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLA 399
+GYK+ +LNG+G G+GTHLSL+ ++ G +D LL WPF ++VT L+DQ +
Sbjct: 448 GYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQG----S 503
Query: 400 KPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIR 459
+H+ + F PDPN +F+KP E ++ G P F++ + Y++DD +FI+
Sbjct: 504 SRRHLGDAFKPDPNSSSFKKP------TGEMNIASGCPVFVAQTVLENGTYIKDDTIFIK 557
Query: 460 AAVE 463
V+
Sbjct: 558 VIVD 561
>gi|22027627 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 134 bits (337), Expect = 2e-31
Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 13/160 (8%)
Query: 307 DGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLY 366
+G LIWK+ Y + +EA + FS +FYT + GY+L A+LNG+GSG G+HLSLY
Sbjct: 403 NGKLIWKVTDYKMKKREAVDGHTVSIFSQSFYTSRCGYRLCARAYLNGDGSGRGSHLSLY 462
Query: 367 IRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGS 426
V+ G FD+LL+WPF +RVT LLDQS +++ ETF PDPN +F++P
Sbjct: 463 FVVMRGEFDSLLQWPFRQRVTLMLLDQSG-----KKNIMETFKPDPNSSSFKRPD----- 512
Query: 427 LDESSLGFGYPKFISHQDIR--KRNYVRDDAVFIRAAVEL 464
E ++ G P+F++H + K Y++DD +F++ AV+L
Sbjct: 513 -GEMNIASGCPRFVAHSVLENAKNAYIKDDTLFLKVAVDL 551
Score = 105 bits (262), Expect = 9e-23
Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 10/222 (4%)
Query: 2 PGFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFK-CPEDQLP 60
P +Y+F+E+ + R C C + P Q CGHRFC C+ CP D+
Sbjct: 29 PSIEYQFVERLEERYKCAFCHSVLHNPHQTG-CGHRFCQHCILSLRELNTVPICPVDKEV 87
Query: 61 LDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPN-RCPM 119
+ +++ D + +VL L + C ++ GC L Q HL C F + C N +C
Sbjct: 88 IKSQEVFKDNCCKREVLNLYVYCSNAP-GCNAKVILGRYQDHLQQCLFQPVQCSNEKCRE 146
Query: 120 KLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESH-EGMCPQESVYCENKCGARMMRR 178
+ R+DL HL C R+ KC +C D ++H E +CP+ V+C N C +++
Sbjct: 147 PVLRKDLKEHLSASCQFRKEKCLYCKKDVVVINLQNHEENLCPEYPVFCPNNCAKIILKT 206
Query: 179 LLAQHATSECPKRTQPCTY----CTKEFVFDTIQSHQYQCPR 216
+ +H + CP+ Q C + C +Q H++ R
Sbjct: 207 EVDEH-LAVCPEAEQDCPFKHYGCAVTDKRRNLQQHEHSALR 247
Score = 82.0 bits (201), Expect = 1e-15
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 153 YESHEGMCPQESVYCEN-KCGARMMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQSHQ 211
Y+ H C + V C N KC ++R+ L +H ++ C R + C YC K+ V +Q+H+
Sbjct: 125 YQDHLQQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQFRKEKCLYCKKDVVVINLQNHE 184
Query: 212 YQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCPKLAMARHV 270
CP PV CPN C + + ++ HL C A CPFK GC + + +H
Sbjct: 185 ENLCPEYPVFCPNNC-AKIILKTEVDEHLA-VCPEAEQDCPFKHYGCAVTDKRRNLQQHE 242
Query: 271 EESVKPHLAMMCALVSRQRQELQELRRELEE 301
+++ H+ ++ + +++ +L + LE+
Sbjct: 243 HSALREHMRLVLEKNVQLEEQISDLHKSLEQ 273
Score = 38.9 bits (89), Expect = 0.010
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 198 CTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGC 257
C + + Q H QC PV C N+ V R+DL HL SC C + C
Sbjct: 116 CNAKVILGRYQDHLQQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQFRKEKCLY----C 171
Query: 258 KHRCPKLAMARHVEESVKPHLAMMC 282
K + + H EE++ P + C
Sbjct: 172 KKDVVVINLQNH-EENLCPEYPVFC 195
>gi|77404348 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 134 bits (337), Expect = 2e-31
Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 13/160 (8%)
Query: 307 DGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLY 366
+G LIWK+ Y + +EA + FS +FYT + GY+L A+LNG+GSG G+HLSLY
Sbjct: 403 NGKLIWKVTDYKMKKREAVDGHTVSIFSQSFYTSRCGYRLCARAYLNGDGSGRGSHLSLY 462
Query: 367 IRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGS 426
V+ G FD+LL+WPF +RVT LLDQS +++ ETF PDPN +F++P
Sbjct: 463 FVVMRGEFDSLLQWPFRQRVTLMLLDQSG-----KKNIMETFKPDPNSSSFKRPD----- 512
Query: 427 LDESSLGFGYPKFISHQDIR--KRNYVRDDAVFIRAAVEL 464
E ++ G P+F++H + K Y++DD +F++ AV+L
Sbjct: 513 -GEMNIASGCPRFVAHSVLENAKNAYIKDDTLFLKVAVDL 551
Score = 105 bits (262), Expect = 9e-23
Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 10/222 (4%)
Query: 2 PGFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFK-CPEDQLP 60
P +Y+F+E+ + R C C + P Q CGHRFC C+ CP D+
Sbjct: 29 PSIEYQFVERLEERYKCAFCHSVLHNPHQTG-CGHRFCQHCILSLRELNTVPICPVDKEV 87
Query: 61 LDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPN-RCPM 119
+ +++ D + +VL L + C ++ GC L Q HL C F + C N +C
Sbjct: 88 IKSQEVFKDNCCKREVLNLYVYCSNAP-GCNAKVILGRYQDHLQQCLFQPVQCSNEKCRE 146
Query: 120 KLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESH-EGMCPQESVYCENKCGARMMRR 178
+ R+DL HL C R+ KC +C D ++H E +CP+ V+C N C +++
Sbjct: 147 PVLRKDLKEHLSASCQFRKEKCLYCKKDVVVINLQNHEENLCPEYPVFCPNNCAKIILKT 206
Query: 179 LLAQHATSECPKRTQPCTY----CTKEFVFDTIQSHQYQCPR 216
+ +H + CP+ Q C + C +Q H++ R
Sbjct: 207 EVDEH-LAVCPEAEQDCPFKHYGCAVTDKRRNLQQHEHSALR 247
Score = 82.0 bits (201), Expect = 1e-15
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 153 YESHEGMCPQESVYCEN-KCGARMMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQSHQ 211
Y+ H C + V C N KC ++R+ L +H ++ C R + C YC K+ V +Q+H+
Sbjct: 125 YQDHLQQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQFRKEKCLYCKKDVVVINLQNHE 184
Query: 212 YQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCPKLAMARHV 270
CP PV CPN C + + ++ HL C A CPFK GC + + +H
Sbjct: 185 ENLCPEYPVFCPNNC-AKIILKTEVDEHLA-VCPEAEQDCPFKHYGCAVTDKRRNLQQHE 242
Query: 271 EESVKPHLAMMCALVSRQRQELQELRRELEE 301
+++ H+ ++ + +++ +L + LE+
Sbjct: 243 HSALREHMRLVLEKNVQLEEQISDLHKSLEQ 273
Score = 38.9 bits (89), Expect = 0.010
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 198 CTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGC 257
C + + Q H QC PV C N+ V R+DL HL SC C + C
Sbjct: 116 CNAKVILGRYQDHLQQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQFRKEKCLY----C 171
Query: 258 KHRCPKLAMARHVEESVKPHLAMMC 282
K + + H EE++ P + C
Sbjct: 172 KKDVVVINLQNH-EENLCPEYPVFC 195
>gi|11321603 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 134 bits (337), Expect = 2e-31
Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 13/160 (8%)
Query: 307 DGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLY 366
+G LIWK+ Y + +EA + FS +FYT + GY+L A+LNG+GSG G+HLSLY
Sbjct: 403 NGKLIWKVTDYKMKKREAVDGHTVSIFSQSFYTSRCGYRLCARAYLNGDGSGRGSHLSLY 462
Query: 367 IRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGS 426
V+ G FD+LL+WPF +RVT LLDQS +++ ETF PDPN +F++P
Sbjct: 463 FVVMRGEFDSLLQWPFRQRVTLMLLDQSG-----KKNIMETFKPDPNSSSFKRPD----- 512
Query: 427 LDESSLGFGYPKFISHQDIR--KRNYVRDDAVFIRAAVEL 464
E ++ G P+F++H + K Y++DD +F++ AV+L
Sbjct: 513 -GEMNIASGCPRFVAHSVLENAKNAYIKDDTLFLKVAVDL 551
Score = 105 bits (262), Expect = 9e-23
Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 10/222 (4%)
Query: 2 PGFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFK-CPEDQLP 60
P +Y+F+E+ + R C C + P Q CGHRFC C+ CP D+
Sbjct: 29 PSIEYQFVERLEERYKCAFCHSVLHNPHQTG-CGHRFCQHCILSLRELNTVPICPVDKEV 87
Query: 61 LDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPN-RCPM 119
+ +++ D + +VL L + C ++ GC L Q HL C F + C N +C
Sbjct: 88 IKSQEVFKDNCCKREVLNLYVYCSNAP-GCNAKVILGRYQDHLQQCLFQPVQCSNEKCRE 146
Query: 120 KLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESH-EGMCPQESVYCENKCGARMMRR 178
+ R+DL HL C R+ KC +C D ++H E +CP+ V+C N C +++
Sbjct: 147 PVLRKDLKEHLSASCQFRKEKCLYCKKDVVVINLQNHEENLCPEYPVFCPNNCAKIILKT 206
Query: 179 LLAQHATSECPKRTQPCTY----CTKEFVFDTIQSHQYQCPR 216
+ +H + CP+ Q C + C +Q H++ R
Sbjct: 207 EVDEH-LAVCPEAEQDCPFKHYGCAVTDKRRNLQQHEHSALR 247
Score = 82.0 bits (201), Expect = 1e-15
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 153 YESHEGMCPQESVYCEN-KCGARMMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQSHQ 211
Y+ H C + V C N KC ++R+ L +H ++ C R + C YC K+ V +Q+H+
Sbjct: 125 YQDHLQQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQFRKEKCLYCKKDVVVINLQNHE 184
Query: 212 YQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCPKLAMARHV 270
CP PV CPN C + + ++ HL C A CPFK GC + + +H
Sbjct: 185 ENLCPEYPVFCPNNC-AKIILKTEVDEHLA-VCPEAEQDCPFKHYGCAVTDKRRNLQQHE 242
Query: 271 EESVKPHLAMMCALVSRQRQELQELRRELEE 301
+++ H+ ++ + +++ +L + LE+
Sbjct: 243 HSALREHMRLVLEKNVQLEEQISDLHKSLEQ 273
Score = 38.9 bits (89), Expect = 0.010
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 198 CTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGC 257
C + + Q H QC PV C N+ V R+DL HL SC C + C
Sbjct: 116 CNAKVILGRYQDHLQQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQFRKEKCLY----C 171
Query: 258 KHRCPKLAMARHVEESVKPHLAMMC 282
K + + H EE++ P + C
Sbjct: 172 KKDVVVINLQNH-EENLCPEYPVFC 195
>gi|22027620 TNF receptor-associated factor 3 isoform 2 [Homo
sapiens]
Length = 543
Score = 128 bits (322), Expect = 1e-29
Identities = 63/157 (40%), Positives = 93/157 (59%), Gaps = 10/157 (6%)
Query: 307 DGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLY 366
+GVLIWKI Y RR QEA L +S FYT +GYK+ +LNG+G G+GTHLSL+
Sbjct: 390 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLF 449
Query: 367 IRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGS 426
++ G +D LL WPF ++VT L+DQ + +H+ + F PDPN +F+KP
Sbjct: 450 FVIMRGEYDALLPWPFKQKVTLMLMDQG----SSRRHLGDAFKPDPNSSSFKKP------ 499
Query: 427 LDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVE 463
E ++ G P F++ + Y++DD +FI+ V+
Sbjct: 500 TGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 536
Score = 94.0 bits (232), Expect = 3e-19
Identities = 57/179 (31%), Positives = 82/179 (45%), Gaps = 4/179 (2%)
Query: 3 GFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLD 62
G+ KF++ + + C C + P Q CGHRFC++C+ LS KC Q +
Sbjct: 38 GYKEKFVKTVEDKYKCEKCHLVLCSPKQTE-CGHRFCESCMAALLSSSSPKCTACQESIV 96
Query: 63 YAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHL-NTCSFNVIPCPN-RCPMK 120
K++ D + ++L L I C + GC L HL HL N C F +PC C K
Sbjct: 97 KDKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEK 156
Query: 121 LSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGM-CPQESVYCENKCGARMMRR 178
+ R+DL H++ C R C C A + HE CP V C +KC + + R
Sbjct: 157 VLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHEDTDCPCVVVSCPHKCSVQTLLR 215
>gi|5032193 TNF receptor-associated factor 1 [Homo sapiens]
Length = 416
Score = 128 bits (321), Expect = 1e-29
Identities = 71/175 (40%), Positives = 105/175 (60%), Gaps = 15/175 (8%)
Query: 291 ELQELRRELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSA 350
+L++ R +EE S DG +WKI + RR E+ + FSPAFYT KYGYKL +
Sbjct: 252 KLEQSLRLMEEASF--DGTFLWKITNVTRRCHESACGRTVSLFSPAFYTAKYGYKLCLRL 309
Query: 351 FLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHP 410
+LNG+G+G+ THLSL+I ++ G +D LL WPF +VTF LLDQ++ +H + F P
Sbjct: 310 YLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNN-----REHAIDAFRP 364
Query: 411 DPNWKNFQKPGTWRGSLDESSLGFGYPKF--ISHQDIRKRNYVRDDAVFIRAAVE 463
D + +FQ+P + E+++ G P F +S K YV+DD +F++ VE
Sbjct: 365 DLSSASFQRPQS------ETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVE 413
>gi|37588861 ring finger protein 41 isoform 1 [Homo sapiens]
Length = 317
Score = 69.7 bits (169), Expect = 5e-12
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 16 LLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQ 75
L+CP+C + EPVQ C H FC+ C+ ++ S+ CP D+ + A + P P +
Sbjct: 16 LICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQ-TCPVDRSVVTVAHLRPVPRIMRN 74
Query: 76 VLG-LPIRCIHSEEGCRWSGPLRHLQGHLNTCSFN---VIPCPNRCPMKLSRRDLPAH 129
+L L I C ++ GC L +L HL+ C N + C C +++ + +LP H
Sbjct: 75 MLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNH 132
>gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens]
Length = 317
Score = 69.7 bits (169), Expect = 5e-12
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 16 LLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQ 75
L+CP+C + EPVQ C H FC+ C+ ++ S+ CP D+ + A + P P +
Sbjct: 16 LICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQ-TCPVDRSVVTVAHLRPVPRIMRN 74
Query: 76 VLG-LPIRCIHSEEGCRWSGPLRHLQGHLNTCSFN---VIPCPNRCPMKLSRRDLPAH 129
+L L I C ++ GC L +L HL+ C N + C C +++ + +LP H
Sbjct: 75 MLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNH 132
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 68.9 bits (167), Expect = 9e-12
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 8/178 (4%)
Query: 3 GFDYK-FLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPL 61
G+D F P +C +C ++ P ++ C H FC C+ +L+ CP + +
Sbjct: 4 GYDLNLFASPPDSNFVCSVCHGVLKRPARLP-CSHIFCKKCILRWLARQK-TCPCCRKEV 61
Query: 62 DYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNR-CPMK 120
K+ +L + L ++C +++ GC + PL H +GH ++C F + CPN C +
Sbjct: 62 KRKKVVHMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNEGCTSQ 121
Query: 121 LSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRR 178
+ R L H QH + +C GC + + E C +E N R RR
Sbjct: 122 VPRGTLAEHRQHCQQGSQQRCPL-GCGATLDPAERARHNCYRE---LHNAWSVRQERR 175
Score = 33.9 bits (76), Expect = 0.33
Identities = 38/135 (28%), Positives = 50/135 (37%), Gaps = 22/135 (16%)
Query: 208 QSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCPKLAMA 267
+ HQ CP ACPN+ V R L H + + CP GC A
Sbjct: 100 KGHQDSCPFELTACPNEGCTSQVPRGTLAEHRQHCQQGSQQRCPL---GCGATLDPAERA 156
Query: 268 RH------------VEESVKPHLAMMCALVSRQRQELQELRRELEELS--VGSDGVLIWK 313
RH +E +P L + V Q +RREL ELS + D L+
Sbjct: 157 RHNCYRELHNAWSVRQERRRPLLLSLLRRVRWLDQATSVVRRELAELSNFLEEDTALL-- 214
Query: 314 IGSYGRRLQEAKAKP 328
G +EA+A P
Sbjct: 215 ---EGAPQEEAEAAP 226
>gi|45594312 TNF receptor-associated factor 7 [Homo sapiens]
Length = 670
Score = 68.6 bits (166), Expect = 1e-11
Identities = 54/179 (30%), Positives = 79/179 (44%), Gaps = 33/179 (18%)
Query: 8 FLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIY 67
F E+P +L C LC ++PV ++TCGH FC C + SE KCP D + L +
Sbjct: 121 FAEQPSVKLCCQLCCSVFKDPV-ITTCGHTFCRRCALK--SE---KCPVDNVKL--TVVV 172
Query: 68 PDPELEVQVLGLPIRCIH---------------SEEGCRWSGPLRHLQGHLNTCSFNVIP 112
+ + Q+ L I C H GC ++ L + H +C + +
Sbjct: 173 NNIAVAEQIGELFIHCRHGCRVAGSGKPPIFEVDPRGCPFTIKLSARKDHEGSCDYRPVR 232
Query: 113 CPNR--CPMKLSRRDLPAHLQH----DCPKRRLKCEFCGCDFSGEAYESHEGMCPQESV 165
CPN CP L R +L AHL+ CP + C F G + + YE+H C E +
Sbjct: 233 CPNNPSCP-PLLRMNLEAHLKECEHIKCPHSKYGCTFIG---NQDTYETHLETCRFEGL 287
Score = 34.7 bits (78), Expect = 0.19
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 14/107 (13%)
Query: 208 QSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCPKLAMA 267
+ H+ C PV CPN + R +L HLK+ + + CP GC +
Sbjct: 220 KDHEGSCDYRPVRCPNNPSCPPLLRMNLEAHLKECEH---IKCPHSKYGCTFIGNQDTYE 276
Query: 268 RHVE----ESVKPHLAM-------MCALVSRQRQELQELRRELEELS 303
H+E E +K L M ++++ QE+ LR L +LS
Sbjct: 277 THLETCRFEGLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGKLS 323
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 62.4 bits (150), Expect = 9e-10
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 10/131 (7%)
Query: 18 CPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVL 77
CP+C + PV + +CGH FC CLQ L CP +LP D K+ +E Q+
Sbjct: 33 CPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFDPKKVDKATHVEKQLS 92
Query: 78 GLPIRCIHSEEGCRWSGPLRHLQGHLNTC---SFNVIPCPNRCPMKLSRRDLPAHLQHDC 134
C GC L ++ H+++C + CP P+ + + +P+++ +
Sbjct: 93 SYKAPC----RGCNKKVTLAKMRVHISSCLKVQEQMANCPKFVPVVPTSQPIPSNIPN-- 146
Query: 135 PKRRLKCEFCG 145
+ C +CG
Sbjct: 147 -RSTFACPYCG 156
>gi|153070264 meprin A beta [Homo sapiens]
Length = 701
Score = 58.5 bits (140), Expect = 1e-08
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 25/167 (14%)
Query: 311 IWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVL 370
IW I R + PN +SP FY+ K GY Q+ +LN T+ +Y ++
Sbjct: 431 IWHI----RNFTQFIGSPNGTLYSPPFYSSK-GYAFQI--YLN---LAHVTNAGIYFHLI 480
Query: 371 PGAFDNLLEWPFA-RRVTFSLLDQSDPGLAKPQHVTETFHPDPN---------WKNFQKP 420
GA D+ L+WP ++ T +LLDQ+ P + + + DP W K
Sbjct: 481 SGANDDQLQWPCPWQQATMTLLDQN-PDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKV 539
Query: 421 GTW----RGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVE 463
GT G+ G+G FI+H+ ++ R++++ D V+I VE
Sbjct: 540 GTVALFSNGTQFRRGGGYGTSAFITHERLKSRDFIKGDDVYILLTVE 586
>gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens]
Length = 1066
Score = 57.4 bits (137), Expect = 3e-08
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Query: 16 LLCPLCGKPMREPVQVSTCGHRFCDTCLQEFL-SEGVFKCPED-QLPLDYAKIYPDPELE 73
L C LC K + +P+ + CGH FC C+ ++ EG CP + L ++ L+
Sbjct: 16 LKCALCHKVLEDPL-TTPCGHVFCAGCVLPWVVQEG--SCPARCRGRLSAKELNHVLPLK 72
Query: 74 VQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNR-CPMKLSRRDLPAHLQH 132
+L L I+C ++ GC L+ L HL C F C + C L RRD+ AH++
Sbjct: 73 RLILKLDIKCAYATRGCGRVVKLQQLPEHLERCDFAPARCRHAGCGQVLLRRDVEAHMRD 132
Query: 133 DCPKRRL-KC-EFCG 145
C R + +C E CG
Sbjct: 133 ACDARPVGRCQEGCG 147
Score = 32.0 bits (71), Expect = 1.2
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 160 CPQESVYCENKCGARMMRRLLAQHATSECP------KRTQPCTY----CTKEFVFDTIQS 209
C V E C AR RL A+ P K C Y C + +
Sbjct: 41 CVLPWVVQEGSCPARCRGRLSAKELNHVLPLKRLILKLDIKCAYATRGCGRVVKLQQLPE 100
Query: 210 HQYQCPRLPVACPNQCGVGTVA-REDLPGHLKDSCN 244
H +C P C G G V R D+ H++D+C+
Sbjct: 101 HLERCDFAPARC-RHAGCGQVLLRRDVEAHMRDACD 135
>gi|40288191 XIAP associated factor 1 isoform 1 [Homo sapiens]
Length = 301
Score = 52.8 bits (125), Expect = 7e-07
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 117 CPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMM 176
C + + L H ++C +R ++C+FC D E HE C + C+ CG +M
Sbjct: 62 CQQSMQKSSLEFHKANECQERPVECKFCKLDMQLSKLELHESYCGSRTELCQG-CGQFIM 120
Query: 177 RRLLAQH---ATSE-----------CPKRTQPCTYCTKEFVFDTIQSHQYQC 214
R+LAQH SE P+R C YC + + H +C
Sbjct: 121 HRMLAQHRDVCRSEQAQLGKGERISAPEREIYCHYCNQMIPENKYFHHMGKC 172
>gi|153070262 meprin A alpha [Homo sapiens]
Length = 746
Score = 52.4 bits (124), Expect = 9e-07
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 311 IWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVL 370
+W + ++ + L+ L+ SP FY + GY V+ + N S +L L V
Sbjct: 435 VWTVRNFSQVLENTSKGDKLQ--SPRFYNSE-GYGFGVTLYPNSRESSG--YLRLAFHVC 489
Query: 371 PGAFDNLLEWPFA-RRVTFSLLDQSDPGL-----------AKPQHVTETFHPDPNWKNFQ 418
G D +LEWP R+V ++LDQ +P + H + + W
Sbjct: 490 SGENDAILEWPVENRQVIITILDQ-EPDVRNRMSSSMVFTTSKSHTSPAINDTVIWDRPS 548
Query: 419 KPGTWRGSLD-ESSLGFGYPKFISHQDIRKRNYVRDDAVFI 458
+ GT+ + S+ G+ FISHQ +++R+++++D + I
Sbjct: 549 RVGTYHTDCNCFRSIDLGWSGFISHQMLKRRSFLKNDDLII 589
>gi|37622343 zinc finger protein 266 [Homo sapiens]
Length = 549
Score = 49.3 bits (116), Expect = 8e-06
Identities = 50/210 (23%), Positives = 77/210 (36%), Gaps = 17/210 (8%)
Query: 98 HLQGHLNTCSFNVIPCPNRCPMK-LSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAY-ES 155
HLQGHL T + + C + DL +Q ++ KC+ CG F AY
Sbjct: 170 HLQGHLRTHNGESLHEWKECGRGFIHSTDLAVRIQTHRSEKPYKCKECGKGFRYSAYLNI 229
Query: 156 HEGMCPQESVYCENKCGARMMRRL-LAQHATSECPKRTQPCTYCTKEFVFDTI--QSHQY 212
H G ++ Y +CG R L QH + ++ C C + F + Q +
Sbjct: 230 HMGTHTGDNPYECKECGKAFTRSCQLTQHRKTHTGEKPYKCKDCGRAFTVSSCLSQHMKI 289
Query: 213 QCPRLPVACPNQCGVGTVAREDLPGHL-----KDSCNTALVLCPFKDSGCKHRCPKLAMA 267
P C +CG+ L HL KD + F++S C L+
Sbjct: 290 HVGEKPYEC-KECGIAFTRSSQLTEHLKTHTAKDPFECKICGKSFRNSSC------LSDH 342
Query: 268 RHVEESVKPHLAMMCALVSRQRQELQELRR 297
+ +KP+ C Q +L + R
Sbjct: 343 FRIHTGIKPYKCKDCGKAFTQNSDLTKHAR 372
>gi|37622349 zinc finger protein 266 [Homo sapiens]
Length = 549
Score = 49.3 bits (116), Expect = 8e-06
Identities = 50/210 (23%), Positives = 77/210 (36%), Gaps = 17/210 (8%)
Query: 98 HLQGHLNTCSFNVIPCPNRCPMK-LSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAY-ES 155
HLQGHL T + + C + DL +Q ++ KC+ CG F AY
Sbjct: 170 HLQGHLRTHNGESLHEWKECGRGFIHSTDLAVRIQTHRSEKPYKCKECGKGFRYSAYLNI 229
Query: 156 HEGMCPQESVYCENKCGARMMRRL-LAQHATSECPKRTQPCTYCTKEFVFDTI--QSHQY 212
H G ++ Y +CG R L QH + ++ C C + F + Q +
Sbjct: 230 HMGTHTGDNPYECKECGKAFTRSCQLTQHRKTHTGEKPYKCKDCGRAFTVSSCLSQHMKI 289
Query: 213 QCPRLPVACPNQCGVGTVAREDLPGHL-----KDSCNTALVLCPFKDSGCKHRCPKLAMA 267
P C +CG+ L HL KD + F++S C L+
Sbjct: 290 HVGEKPYEC-KECGIAFTRSSQLTEHLKTHTAKDPFECKICGKSFRNSSC------LSDH 342
Query: 268 RHVEESVKPHLAMMCALVSRQRQELQELRR 297
+ +KP+ C Q +L + R
Sbjct: 343 FRIHTGIKPYKCKDCGKAFTQNSDLTKHAR 372
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 48.9 bits (115), Expect = 1e-05
Identities = 43/129 (33%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 12 PKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPE 71
P R CP+C + +PVQV CGH FC CLQE L C + L A E
Sbjct: 23 PLGRFTCPVCLEVYEKPVQVP-CGHVFCSACLQECLKPKKPVCGVCRSAL--APGVRAVE 79
Query: 72 LEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCS--FNVIPCPNRCPMK---LSRRDL 126
LE Q+ C GCR + L ++ H+ TCS N I + +K L R++
Sbjct: 80 LERQIESTETSC----HGCRKNFFLSKIRSHVATCSKYQNYIMEGVKATIKDASLQPRNV 135
Query: 127 PAHLQHDCP 135
P CP
Sbjct: 136 PNRYTFPCP 144
>gi|40288193 XIAP associated factor 1 isoform 2 [Homo sapiens]
Length = 282
Score = 48.5 bits (114), Expect = 1e-05
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 22/133 (16%)
Query: 102 HLNTCSFNVIPCPNRCPMKLSRRDLPAH--LQH----DCPKRRLKCEFCGCDFSGEAYES 155
H C ++ CP C + + + H L+H +C +R ++C+FC D E
Sbjct: 23 HEAYCLRFLVLCPE-CEEPVPKETMEEHCKLEHQQANECQERPVECKFCKLDMQLSKLEL 81
Query: 156 HEGMCPQESVYCENKCGARMMRRLLAQH---ATSE-----------CPKRTQPCTYCTKE 201
HE C + C+ CG +M R+LAQH SE P+R C YC +
Sbjct: 82 HESYCGSRTELCQG-CGQFIMHRMLAQHRDVCRSEQAQLGKGERISAPEREIYCHYCNQM 140
Query: 202 FVFDTIQSHQYQC 214
+ H +C
Sbjct: 141 IPENKYFHHMGKC 153
>gi|24025688 ligand of numb-protein X 2 [Homo sapiens]
Length = 690
Score = 48.5 bits (114), Expect = 1e-05
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 33/132 (25%)
Query: 6 YKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAK 65
Y + + L+C +C +P+ +P+ + CGH FC CL+ FL E F CP D+ L +
Sbjct: 38 YNYQNEVDDDLVCHICLQPLLQPLD-TPCGHTFCYKCLRNFLQEKDF-CPLDRKRLHF-- 93
Query: 66 IYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRH--LQGHLNTCSFNVIPCPNRCPMKLSR 123
+ C+ S L H L L C F+ + C + R
Sbjct: 94 ----------------------KLCKKSSILVHKLLDKLLVLCPFSSV-----CKDVMQR 126
Query: 124 RDLPAHLQHDCP 135
DL AHL++ CP
Sbjct: 127 CDLEAHLKNRCP 138
>gi|14249488 zinc finger and SCAN domain containing 10 [Homo
sapiens]
Length = 725
Score = 46.6 bits (109), Expect = 5e-05
Identities = 45/175 (25%), Positives = 65/175 (37%), Gaps = 12/175 (6%)
Query: 126 LPAHLQHDCPKRRLKCEFCGCDFSGEAY-ESHEGMCPQESVYCENKCGARMMRRL-LAQH 183
L AH + +R C+ CG F+ + SH+ + E Y +CG R +RR LA+H
Sbjct: 482 LVAHRRVHTGERPFSCQACGRSFTQSSQLVSHQRVHTGEKPYACPQCGKRFVRRASLARH 541
Query: 184 ATSECPKRTQPCTYCTKEF--VFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKD 241
+ R CT C K F D + + P C ++CG G L H +
Sbjct: 542 LLTHGGPRPHHCTQCGKSFGQTQDLARHQRSHTGEKPCRC-SECGEGFSQSAHLARHQRI 600
Query: 242 SCNTALVLCPFKDSGCKHR---CPKLAMARHVEESVKPHLAMMCALVSRQRQELQ 293
P C HR LA R +P+ C R+ L+
Sbjct: 601 HTGEK----PHACDTCGHRFRNSSNLARHRRSHTGERPYSCQTCGRSFRRNAHLR 651
Score = 33.5 bits (75), Expect = 0.43
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 124 RDLPAHLQHDCPKRRLKCEFCGCDFSGEAY-ESHEGMCPQESVYCENKCGARMMRRL-LA 181
+DL H + ++ +C CG FS A+ H+ + E + + CG R LA
Sbjct: 564 QDLARHQRSHTGEKPCRCSECGEGFSQSAHLARHQRIHTGEKPHACDTCGHRFRNSSNLA 623
Query: 182 QHATSECPKRTQPCTYCTKEF 202
+H S +R C C + F
Sbjct: 624 RHRRSHTGERPYSCQTCGRSF 644
>gi|21483182 zinc finger with KRAB and SCAN domains 5 [Homo sapiens]
Length = 839
Score = 45.4 bits (106), Expect = 1e-04
Identities = 44/162 (27%), Positives = 63/162 (38%), Gaps = 19/162 (11%)
Query: 88 EGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRR----DLP-AHLQHDCPKRRLKCE 142
EGC + G L QG IP S+R ++P H + +R KC
Sbjct: 502 EGCEFQGKLDRKQG---------IPMKEILGQPSSKRMNYSEVPYVHKKSSTGERPHKCN 552
Query: 143 FCGCDFSGEAYE-SHEGMCPQESVYCENKCGARMMRRL-LAQHATSECPKRTQPCTYCTK 200
CG F A+ H+ + E + +CG +R+ L QH ++ C C K
Sbjct: 553 ECGKSFIQSAHLIQHQRIHTGEKPFRCEECGKSYNQRVHLTQHQRVHTGEKPYTCPLCGK 612
Query: 201 EFVFDT--IQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLK 240
F + +Q P C N+CG G R L GHL+
Sbjct: 613 AFRVRSHLVQHQSVHSGERPFKC-NECGKGFGRRSHLAGHLR 653
>gi|11036642 zinc finger with KRAB and SCAN domains 5 [Homo sapiens]
Length = 839
Score = 45.4 bits (106), Expect = 1e-04
Identities = 44/162 (27%), Positives = 63/162 (38%), Gaps = 19/162 (11%)
Query: 88 EGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRR----DLP-AHLQHDCPKRRLKCE 142
EGC + G L QG IP S+R ++P H + +R KC
Sbjct: 502 EGCEFQGKLDRKQG---------IPMKEILGQPSSKRMNYSEVPYVHKKSSTGERPHKCN 552
Query: 143 FCGCDFSGEAYE-SHEGMCPQESVYCENKCGARMMRRL-LAQHATSECPKRTQPCTYCTK 200
CG F A+ H+ + E + +CG +R+ L QH ++ C C K
Sbjct: 553 ECGKSFIQSAHLIQHQRIHTGEKPFRCEECGKSYNQRVHLTQHQRVHTGEKPYTCPLCGK 612
Query: 201 EFVFDT--IQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLK 240
F + +Q P C N+CG G R L GHL+
Sbjct: 613 AFRVRSHLVQHQSVHSGERPFKC-NECGKGFGRRSHLAGHLR 653
>gi|219879806 TRAF-type zinc finger domain containing 1 [Homo
sapiens]
Length = 582
Score = 45.1 bits (105), Expect = 1e-04
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 113 CPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCG 172
C N C ++ + H H C + C C F E+H E KC
Sbjct: 13 CDN-CKKEIPVFNFTIHEIH-CQRNIGMCPTCKEPFPKSDMETHMAA---EHCQVTCKCN 67
Query: 173 ARMMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAR 232
++ +RLL +H +ECP R C +C E ++ H+ C C N CG + +
Sbjct: 68 KKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGN-CGRNVLVK 126
Query: 233 EDLPGH 238
DL H
Sbjct: 127 -DLKTH 131
Score = 36.6 bits (83), Expect = 0.050
Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 37/150 (24%)
Query: 73 EVQVLGLPIRCIHSEEG------CRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDL 126
E+ V I IH + C+ P ++ H+ + C +C KL +R L
Sbjct: 19 EIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHM-AAEHCQVTC--KCNKKLEKRLL 75
Query: 127 PAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLLAQHATS 186
H + +CP R C+ C + S + HE + CGAR
Sbjct: 76 KKHEETECPLRLAVCQHCDLELSILKLKEHE-----------DYCGAR------------ 112
Query: 187 ECPKRTQPCTYCTKEFVFDTIQSHQYQCPR 216
T+ C C + + +++H C R
Sbjct: 113 -----TELCGNCGRNVLVKDLKTHPEVCGR 137
>gi|5729828 TRAF-type zinc finger domain containing 1 [Homo sapiens]
Length = 582
Score = 45.1 bits (105), Expect = 1e-04
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 113 CPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCG 172
C N C ++ + H H C + C C F E+H E KC
Sbjct: 13 CDN-CKKEIPVFNFTIHEIH-CQRNIGMCPTCKEPFPKSDMETHMAA---EHCQVTCKCN 67
Query: 173 ARMMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAR 232
++ +RLL +H +ECP R C +C E ++ H+ C C N CG + +
Sbjct: 68 KKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGN-CGRNVLVK 126
Query: 233 EDLPGH 238
DL H
Sbjct: 127 -DLKTH 131
Score = 36.6 bits (83), Expect = 0.050
Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 37/150 (24%)
Query: 73 EVQVLGLPIRCIHSEEG------CRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDL 126
E+ V I IH + C+ P ++ H+ + C +C KL +R L
Sbjct: 19 EIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHM-AAEHCQVTC--KCNKKLEKRLL 75
Query: 127 PAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLLAQHATS 186
H + +CP R C+ C + S + HE + CGAR
Sbjct: 76 KKHEETECPLRLAVCQHCDLELSILKLKEHE-----------DYCGAR------------ 112
Query: 187 ECPKRTQPCTYCTKEFVFDTIQSHQYQCPR 216
T+ C C + + +++H C R
Sbjct: 113 -----TELCGNCGRNVLVKDLKTHPEVCGR 137
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,632,559
Number of Sequences: 37866
Number of extensions: 1106829
Number of successful extensions: 4220
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 504
Number of HSP's that attempted gapping in prelim test: 3605
Number of HSP's gapped (non-prelim): 958
length of query: 470
length of database: 18,247,518
effective HSP length: 106
effective length of query: 364
effective length of database: 14,233,722
effective search space: 5181074808
effective search space used: 5181074808
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.