Guide to the Human Genome
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Name: ZSCAN10 Sequence: fasta or formatted (725aa) NCBI GI: 14249488
Description:

zinc finger and SCAN domain containing 10

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         54           3
 C cysteine            5.2         38           2
 D aspartate           2.8         20           1
 E glutamate           7.3         53           2
 F phenylalanine       3.4         25           1
 G glycine             7.6         55           2
 H histidine           6.6         48           2
 I isoleucine          1.1          8           1
 K lysine              3.9         28           2
 L leucine             9.9         72           3
 M methionine          0.3          2           1
 N asparagine          1.1          8           1
 P proline             8.8         64           2
 Q glutamine           5.9         43           1
 R arginine           10.1         73           3
 S serine             10.3         75           2
 T threonine           3.6         26           1
 V valine              3.3         24           2
 W tryptophan          0.7          5           1
 Y tyrosine            0.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger and SCAN domain containing 10 
ZNF167                0.270   zinc finger protein 167 isoform 1 
ZNF16                 0.249   zinc finger protein 16 
ZNF16                 0.249   zinc finger protein 16 
LOC100287429          0.249   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.249   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.249   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.249   zinc finger protein 84 
ZNF84                 0.249   zinc finger protein 84 
ZNF135                0.245   zinc finger protein 135 
ZNF616                0.245   zinc finger protein 616 
ZNF160                0.245   zinc finger protein 160 
ZNF160                0.245   zinc finger protein 160 
ZNF160                0.245   zinc finger protein 160 
ZNF132                0.242   zinc finger protein 132 
ZNF226                0.242   zinc finger protein 226 isoform a 
ZNF226                0.242   zinc finger protein 226 isoform a 
ZNF835                0.239   zinc finger protein 835 
ZNF347                0.239   zinc finger protein 347 
ZNF420                0.239   zinc finger protein 420 
ZNF91                 0.239   zinc finger protein 91 
ZSCAN2                0.238   zinc finger protein 29 isoform 1 
ZNF665                0.237   zinc finger protein 665 
ZNF229                0.237   zinc finger protein 229 
ZNF85                 0.236   zinc finger protein 85 
ZNF43                 0.236   zinc finger protein 43 
ZNF605                0.235   zinc finger protein 605 
ZNF45                 0.233   zinc finger protein 45 
ZNF93                 0.233   zinc finger protein 93 
ZNF235                0.233   zinc finger protein 93 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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