Guide to the Human Genome
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Name: MEP1B Sequence: fasta or formatted (701aa) NCBI GI: 153070264
Description:

meprin A beta

Referenced in:

Metalloproteases
Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         28           1
 C cysteine            2.4         17           1
 D aspartate           7.4         52           2
 E glutamate           4.6         32           2
 F phenylalanine       5.1         36           2
 G glycine             7.4         52           3
 H histidine           2.4         17           2
 I isoleucine          6.1         43           2
 K lysine              3.4         24           2
 L leucine             8.0         56           2
 M methionine          2.3         16           1
 N asparagine          5.6         39           1
 P proline             3.3         23           2
 Q glutamine           4.7         33           2
 R arginine            6.0         42           2
 S serine              9.6         67           3
 T threonine           6.1         43           2
 V valine              5.6         39           2
 W tryptophan          2.1         15           2
 Y tyrosine            3.9         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   meprin A beta 
MEP1A                 0.343   meprin A alpha 
ASTL                  0.081   astacin-like metalloendopeptidase 
TLL2                  0.071   tolloid-like 2 
TLL1                  0.070   tolloid-like 1 
BMP1                  0.070   bone morphogenetic protein 1 isoform 1 precursor [Hom...
BMP1                  0.070   bone morphogenetic protein 1 isoform 2 precursor [Hom...
BMP1                  0.070   bone morphogenetic protein 1 isoform 3 precursor [Hom...
MDGA1                 0.036   MAM domain containing glycosylphosphatidylinositol a...
MDGA2                 0.028   MAM domain containing 1 isoform 1 
MDGA2                 0.028   MAM domain containing 1 isoform 2 
TRAF4                 0.024   TNF receptor-associated factor 4 
MAMDC2                0.022   MAM domain containing 2 
PRSS7                 0.020   enterokinase precursor 
NRP1                  0.020   neuropilin 1 isoform a 
IMPG2                 0.020   interphotoreceptor matrix proteoglycan 2 
C10orf112             0.017   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.017   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.017   PREDICTED: chromosome 10 open reading frame 112 [Ho...
MAMDC4                0.016   apical early endosomal glycoprotein precursor [Homo...
ZAN                   0.014   zonadhesin isoform 3 
ZAN                   0.014   zonadhesin isoform 6 
TRAF2                 0.014   TNF receptor-associated factor 2 
NRG2                  0.013   neuregulin 2 isoform 2 
TRAF3                 0.012   TNF receptor-associated factor 3 isoform 1 
TRAF3                 0.012   TNF receptor-associated factor 3 isoform 2 
TRAF3                 0.012   TNF receptor-associated factor 3 isoform 1 
PTPRM                 0.011   protein tyrosine phosphatase, receptor type, M isof...
NRG2                  0.011   neuregulin 2 isoform 1 
PTPRM                 0.011   protein tyrosine phosphatase, receptor type, M isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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