Guide to the Human Genome
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Name: TRAF3 Sequence: fasta or formatted (568aa) NCBI GI: 22027616
Description:

TNF receptor-associated factor 3 isoform 1

Referenced in:

TNF and Related Signals

Other entries for this name:
alt mRNA [568aa] TNF receptor-associated factor 3 isoform 1
alt prot [543aa] TNF receptor-associated factor 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         27           2
 C cysteine            4.9         28           2
 D aspartate           5.3         30           2
 E glutamate           7.6         43           2
 F phenylalanine       3.3         19           2
 G glycine             4.4         25           2
 H histidine           3.3         19           1
 I isoleucine          3.7         21           1
 K lysine              9.0         51           2
 L leucine             9.7         55           2
 M methionine          2.8         16           1
 N asparagine          3.7         21           2
 P proline             4.0         23           2
 Q glutamine           5.3         30           2
 R arginine            4.9         28           2
 S serine              9.2         52           4
 T threonine           4.0         23           1
 V valine              6.9         39           3
 W tryptophan          0.7          4           1
 Y tyrosine            2.5         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TNF receptor-associated factor 3 isoform 1 
TRAF3                 1.000   TNF receptor-associated factor 3 isoform 1 
TRAF3                 0.941   TNF receptor-associated factor 3 isoform 2 
TRAF5                 0.380   TNF receptor-associated factor 5 
TRAF5                 0.380   TNF receptor-associated factor 5 
TRAF5                 0.380   TNF receptor-associated factor 5 
TRAF2                 0.234   TNF receptor-associated factor 2 
TRAF1                 0.181   TNF receptor-associated factor 1 
TRAF6                 0.149   TNF receptor-associated factor 6 
TRAF6                 0.149   TNF receptor-associated factor 6 
TRAF4                 0.116   TNF receptor-associated factor 4 
PDZRN3                0.041   PDZ domain containing ring finger 3 
RNF151                0.040   ring finger protein 151 
TRAF7                 0.034   TNF receptor-associated factor 7 
MYH15                 0.030   myosin, heavy polypeptide 15 
ERC2                  0.025   cytomatrix protein p110 
RNF125                0.024   ring finger protein 125 
LOC283685             0.021   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.020   PREDICTED: golgi autoantigen, golgin subfamily a-li...
ERC1                  0.020   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.020   RAB6-interacting protein 2 isoform delta 
LONRF1                0.019   LON peptidase N-terminal domain and ring finger 1 [H...
RNF166                0.019   ring finger protein 166 
CCDC18                0.018   sarcoma antigen NY-SAR-41 
TRIP11                0.018   thyroid hormone receptor interactor 11 
RNF138                0.018   ring finger protein 138 isoform 1 
LOC440243             0.018   PREDICTED: Putative golgin subfamily A member 6-lik...
PPFIA3                0.018   PTPRF interacting protein alpha 3 
GOLGA4                0.017   golgi autoantigen, golgin subfamily a, 4 
ANKRD26               0.017   ankyrin repeat domain 26 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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