Guide to the Human Genome
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Name: TRAF3 Sequence: fasta or formatted (543aa) NCBI GI: 22027620
Description:

TNF receptor-associated factor 3 isoform 2

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [568aa] TNF receptor-associated factor 3 isoform 1
alt prot [568aa] TNF receptor-associated factor 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         25           2
 C cysteine            4.6         25           2
 D aspartate           5.5         30           2
 E glutamate           7.7         42           2
 F phenylalanine       3.1         17           2
 G glycine             4.4         24           2
 H histidine           3.3         18           1
 I isoleucine          3.9         21           1
 K lysine              9.2         50           2
 L leucine             9.8         53           2
 M methionine          2.9         16           1
 N asparagine          3.7         20           2
 P proline             4.1         22           2
 Q glutamine           5.3         29           2
 R arginine            5.0         27           2
 S serine              8.8         48           4
 T threonine           4.1         22           1
 V valine              6.8         37           3
 W tryptophan          0.7          4           1
 Y tyrosine            2.4         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TNF receptor-associated factor 3 isoform 2 
TRAF3                 0.987   TNF receptor-associated factor 3 isoform 1 
TRAF3                 0.987   TNF receptor-associated factor 3 isoform 1 
TRAF5                 0.364   TNF receptor-associated factor 5 
TRAF5                 0.364   TNF receptor-associated factor 5 
TRAF5                 0.364   TNF receptor-associated factor 5 
TRAF2                 0.230   TNF receptor-associated factor 2 
TRAF1                 0.172   TNF receptor-associated factor 1 
TRAF6                 0.135   TNF receptor-associated factor 6 
TRAF6                 0.135   TNF receptor-associated factor 6 
TRAF4                 0.095   TNF receptor-associated factor 4 
PDZRN3                0.043   PDZ domain containing ring finger 3 
RNF151                0.042   ring finger protein 151 
MYH15                 0.032   myosin, heavy polypeptide 15 
ERC2                  0.027   cytomatrix protein p110 
LOC283685             0.025   PREDICTED: golgi autoantigen, golgin subfamily a-li...
RNF125                0.025   ring finger protein 125 
LOC283685             0.024   PREDICTED: golgi autoantigen, golgin subfamily a-li...
ERC1                  0.021   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.021   RAB6-interacting protein 2 isoform delta 
TRAF7                 0.021   TNF receptor-associated factor 7 
CKAP4                 0.020   cytoskeleton-associated protein 4 
RNF166                0.020   ring finger protein 166 
CCDC18                0.019   sarcoma antigen NY-SAR-41 
RNF138                0.019   ring finger protein 138 isoform 1 
ANKRD36B              0.018   ankyrin repeat domain 36B 
ANKRD36               0.018   PREDICTED: ankyrin repeat domain 36 
LOC440243             0.018   PREDICTED: Putative golgin subfamily A member 6-lik...
PPFIA3                0.018   PTPRF interacting protein alpha 3 
KIAA1524              0.018   p90 autoantigen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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