Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZKSCAN5 Sequence: fasta or formatted (839aa) NCBI GI: 21483182
Description:

zinc finger with KRAB and SCAN domains 5

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt mRNA [839aa] zinc finger with KRAB and SCAN domains 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0         25           1
 C cysteine            4.3         36           2
 D aspartate           3.6         30           2
 E glutamate           9.9         83           3
 F phenylalanine       3.6         30           2
 G glycine             5.8         49           1
 H histidine           6.2         52           2
 I isoleucine          4.2         35           1
 K lysine              7.0         59           3
 L leucine             7.2         60           2
 M methionine          1.4         12           1
 N asparagine          2.9         24           1
 P proline             4.9         41           2
 Q glutamine           7.9         66           2
 R arginine            6.4         54           2
 S serine              8.6         72           2
 T threonine           4.3         36           1
 V valine              5.5         46           1
 W tryptophan          1.0          8           1
 Y tyrosine            2.5         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger with KRAB and SCAN domains 5 
ZKSCAN5               1.000   zinc finger with KRAB and SCAN domains 5 
ZNF189                0.263   zinc finger protein 189 isoform 1 
ZNF420                0.259   zinc finger protein 420 
ZNF184                0.251   zinc finger protein 184 
ZNF665                0.249   zinc finger protein 665 
ZSCAN12               0.246   zinc finger and SCAN domain containing 12 
ZNF595                0.245   zinc finger protein 595 
ZNF347                0.244   zinc finger protein 347 
LOC100287429          0.244   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.244   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.244   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.244   zinc finger protein 84 
ZNF84                 0.244   zinc finger protein 84 
ZNF135                0.243   zinc finger protein 135 
ZNF780A               0.240   zinc finger protein 780A isoform b 
ZNF780A               0.240   zinc finger protein 780A isoform b 
ZNF780A               0.240   zinc finger protein 780A isoform a 
ZNF160                0.240   zinc finger protein 160 
ZNF160                0.240   zinc finger protein 160 
ZNF160                0.240   zinc finger protein 160 
ZNF30                 0.238   zinc finger protein 30 isoform b 
ZNF30                 0.237   zinc finger protein 30 isoform a 
ZNF30                 0.237   zinc finger protein 30 isoform a 
ZNF470                0.237   zinc finger protein 470 
ZNF91                 0.234   zinc finger protein 91 
ZNF594                0.234   zinc finger protein 594 
ZNF721                0.234   zinc finger protein 721 
ZNF229                0.234   zinc finger protein 229 
ZNF624                0.233   zinc finger protein 624 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press