Guide to the Human Genome
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Name: TRAF2 Sequence: fasta or formatted (501aa) NCBI GI: 22027612
Description:

TNF receptor-associated factor 2

Referenced in:

MAP Kinase Pathways
NF-kappaB Pathway
TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         40           3
 C cysteine            6.2         31           2
 D aspartate           4.2         21           2
 E glutamate           8.2         41           2
 F phenylalanine       3.8         19           2
 G glycine             6.2         31           1
 H histidine           3.2         16           2
 I isoleucine          3.8         19           1
 K lysine              6.2         31           3
 L leucine            10.2         51           2
 M methionine          2.2         11           1
 N asparagine          2.6         13           2
 P proline             5.0         25           2
 Q glutamine           3.8         19           2
 R arginine            6.6         33           2
 S serine              7.4         37           3
 T threonine           3.8         19           1
 V valine              6.0         30           2
 W tryptophan          0.8          4           1
 Y tyrosine            2.0         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TNF receptor-associated factor 2 
TRAF5                 0.265   TNF receptor-associated factor 5 
TRAF5                 0.265   TNF receptor-associated factor 5 
TRAF5                 0.265   TNF receptor-associated factor 5 
TRAF3                 0.263   TNF receptor-associated factor 3 isoform 1 
TRAF3                 0.263   TNF receptor-associated factor 3 isoform 1 
TRAF1                 0.247   TNF receptor-associated factor 1 
TRAF3                 0.247   TNF receptor-associated factor 3 isoform 2 
TRAF4                 0.186   TNF receptor-associated factor 4 
TRAF6                 0.171   TNF receptor-associated factor 6 
TRAF6                 0.171   TNF receptor-associated factor 6 
RNF151                0.029   ring finger protein 151 
ZNF230                0.023   zinc finger protein 230 
ZNF222                0.023   zinc finger protein 222 isoform 1 
ZNF222                0.023   zinc finger protein 222 isoform 2 
XAF1                  0.020   XIAP associated factor 1 isoform 2 
MEP1B                 0.020   meprin A beta 
RNF166                0.019   ring finger protein 166 
ZNF14                 0.019   zinc finger protein 14 
MEP1A                 0.019   meprin A alpha 
ZNF786                0.019   zinc finger protein 786 
RNF114                0.018   zinc finger protein 313 
TRAFD1                0.017   TRAF-type zinc finger domain containing 1 
TRAFD1                0.017   TRAF-type zinc finger domain containing 1 
KCP                   0.016   cysteine rich BMP regulator 2 isoform 1 
UHRF2                 0.016   ubiquitin-like with PHD and ring finger domains 2 [H...
TRIM50                0.016   tripartite motif protein 50A 
RNF125                0.016   ring finger protein 125 
ZNF155                0.015   zinc finger protein 155 
ZNF155                0.015   zinc finger protein 155 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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