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Search of human proteins with 22027557
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22027557 voltage-dependent calcium channel gamma-6 subunit
isoform b [Homo sapiens]
(214 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22027557 voltage-dependent calcium channel gamma-6 subunit is... 445 e-125
gi|22027554 voltage-dependent calcium channel gamma-6 subunit is... 423 e-119
gi|22027560 voltage-dependent calcium channel gamma-6 subunit is... 379 e-106
gi|4502539 voltage-dependent calcium channel gamma-1 subunit [Ho... 112 2e-25
gi|149192855 HLA-B associated transcript 2-like [Homo sapiens] 32 0.53
gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Ho... 31 0.69
gi|5031949 natural killer cell group 7 sequence [Homo sapiens] 30 1.5
gi|40549411 glial cell derived neurotrophic factor isoform 2 pre... 29 2.6
gi|4503975 glial cell derived neurotrophic factor isoform 1 prep... 29 2.6
gi|37537696 M-phase phosphoprotein 9 [Homo sapiens] 29 2.6
gi|31377722 PERP, TP53 apoptosis effector [Homo sapiens] 29 3.4
gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Ho... 29 3.4
gi|239756061 PREDICTED: hypothetical protein [Homo sapiens] 28 4.5
gi|239750588 PREDICTED: hypothetical protein XP_002347440 [Homo ... 28 4.5
gi|239744885 PREDICTED: hypothetical protein XP_002344275 [Homo ... 28 4.5
gi|74275350 translocator protein isoform PBR [Homo sapiens] 28 5.8
gi|24497587 adenylate cyclase 4 [Homo sapiens] 28 5.8
gi|21361975 voltage-dependent calcium channel gamma-7 subunit [H... 28 5.8
gi|169216064 PREDICTED: hypothetical protein [Homo sapiens] 28 7.6
gi|169208488 PREDICTED: hypothetical protein [Homo sapiens] 28 7.6
gi|20336477 B-cell CLL/lymphoma 7C [Homo sapiens] 28 7.6
gi|15812196 F-box only protein 24 isoform 1 [Homo sapiens] 28 7.6
gi|222080107 solute carrier family 23 (nucleobase transporters),... 27 10.0
gi|222080105 solute carrier family 23 (nucleobase transporters),... 27 10.0
gi|158635944 solute carrier family 23 (nucleobase transporters),... 27 10.0
gi|239753585 PREDICTED: hypothetical protein [Homo sapiens] 27 10.0
gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo... 27 10.0
gi|239746628 PREDICTED: hypothetical protein XP_002344230 [Homo ... 27 10.0
gi|145699133 KPL2 protein isoform 1 [Homo sapiens] 27 10.0
gi|124107616 claudin 23 [Homo sapiens] 27 10.0
>gi|22027557 voltage-dependent calcium channel gamma-6 subunit
isoform b [Homo sapiens]
Length = 214
Score = 445 bits (1145), Expect = e-125
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 60
MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE
Sbjct: 1 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 60
Query: 61 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF 120
FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF
Sbjct: 61 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF 120
Query: 121 TTGENARIFQRTTKKGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVG 180
TTGENARIFQRTTKKGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVG
Sbjct: 121 TTGENARIFQRTTKKGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVG 180
Query: 181 AGLILLLGAGCFLLLTLPSWPWGSLCPKRGHRAT 214
AGLILLLGAGCFLLLTLPSWPWGSLCPKRGHRAT
Sbjct: 181 AGLILLLGAGCFLLLTLPSWPWGSLCPKRGHRAT 214
>gi|22027554 voltage-dependent calcium channel gamma-6 subunit
isoform a [Homo sapiens]
Length = 260
Score = 423 bits (1088), Expect = e-119
Identities = 214/260 (82%), Positives = 214/260 (82%), Gaps = 46/260 (17%)
Query: 1 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 60
MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE
Sbjct: 1 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 60
Query: 61 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF 120
FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF
Sbjct: 61 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF 120
Query: 121 TTGENARIFQRTTKK--------------------------------------------- 135
TTGENARIFQRTTKK
Sbjct: 121 TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL 180
Query: 136 -GLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL 194
GLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL
Sbjct: 181 SGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL 240
Query: 195 LTLPSWPWGSLCPKRGHRAT 214
LTLPSWPWGSLCPKRGHRAT
Sbjct: 241 LTLPSWPWGSLCPKRGHRAT 260
>gi|22027560 voltage-dependent calcium channel gamma-6 subunit
isoform c [Homo sapiens]
Length = 189
Score = 379 bits (974), Expect = e-106
Identities = 189/214 (88%), Positives = 189/214 (88%), Gaps = 25/214 (11%)
Query: 1 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 60
MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE
Sbjct: 1 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 60
Query: 61 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF 120
FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPG
Sbjct: 61 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPG---------- 110
Query: 121 TTGENARIFQRTTKKGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVG 180
GLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVG
Sbjct: 111 ---------------GLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVG 155
Query: 181 AGLILLLGAGCFLLLTLPSWPWGSLCPKRGHRAT 214
AGLILLLGAGCFLLLTLPSWPWGSLCPKRGHRAT
Sbjct: 156 AGLILLLGAGCFLLLTLPSWPWGSLCPKRGHRAT 189
>gi|4502539 voltage-dependent calcium channel gamma-1 subunit [Homo
sapiens]
Length = 222
Score = 112 bits (281), Expect = 2e-25
Identities = 69/211 (32%), Positives = 97/211 (45%), Gaps = 57/211 (27%)
Query: 38 KVKLALLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVP 97
KV++ L G LA+ +V T+ W L+ + + + CEAAH GLW+ CTKR +P
Sbjct: 8 KVRVTLFCILAGIVLAMTAVVTDHWAVLSPHMEHHNTTCEAAHFGLWRICTKR-----IP 62
Query: 98 V-DRDTCGPAELPGEANCTYFKFFTTGENARIFQRTTKK--------------------- 135
+ D TCGP LPGE NC+YF+ F GE++ IF+ TT+K
Sbjct: 63 MDDSKTCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAIAIFSLGFIILGS 122
Query: 136 -------------------------GLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYE 170
GL +LVS+EV R SV+ ++ + + Y
Sbjct: 123 LCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVKRMI-----DSEDTVWIEYY 177
Query: 171 YSWSLGCGVGAGLILLLGAGCFLLLTLPSWP 201
YSWS C A ++L LG LL +LP P
Sbjct: 178 YSWSFACACAAFILLFLGGLALLLFSLPRMP 208
>gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]
Length = 2229
Score = 31.6 bits (70), Expect = 0.53
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 8 LQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTEFW 62
L+EE R++ A + G+G S P R K + L L T+ S+GTE W
Sbjct: 1574 LEEERRKKEQAVQVPVKGRGLSSRIPPRFAKKQNNLCLEQGDVTVPGSSLGTEIW 1628
>gi|7656948 voltage-dependent calcium channel gamma-4 subunit
[Homo sapiens]
Length = 327
Score = 31.2 bits (69), Expect = 0.69
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 16/63 (25%)
Query: 41 LALLLAAVGA----TLAVLSVGTEFWVELNTYKANGS------------AVCEAAHLGLW 84
L +LL GA +L +++GT++W+ + + NG+ A + H GLW
Sbjct: 8 LQMLLTTAGAFAAFSLMAIAIGTDYWLYSSAHICNGTNLTMDDGPPPRRARGDLTHSGLW 67
Query: 85 KAC 87
+ C
Sbjct: 68 RVC 70
>gi|5031949 natural killer cell group 7 sequence [Homo sapiens]
Length = 165
Score = 30.0 bits (66), Expect = 1.5
Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 26/163 (15%)
Query: 41 LALLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDR 100
LALL ++G ++++ T+FW E +AH GLW + + V +
Sbjct: 7 LALLGGSLGLMFCLIALSTDFWFE-------AVGPTHSAHSGLWPTGHGDIISGYIHVTQ 59
Query: 101 DTCGPAELPGEANCTYF------KFFTTGENARIFQRTTKKGLLLLVSLEVFRHSVRALL 154
A L + ++ F G + +T +S+ V A+
Sbjct: 60 TFSIMAVLWALVSVSFLVLSCFPSLFPPGHGPLV---STTAAFAAAISMVV----AMAVY 112
Query: 155 QRVSPEPPPAPRLTYEYSWSLGCGVGAGLILL------LGAGC 191
+ PP P++ +SWS G + ++LL LGA C
Sbjct: 113 TSERWDQPPHPQIQTFFSWSFYLGWVSAILLLCTGALSLGAHC 155
>gi|40549411 glial cell derived neurotrophic factor isoform 2
precursor [Homo sapiens]
Length = 185
Score = 29.3 bits (64), Expect = 2.6
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 9 QEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTEFWVELNTY 68
+E NR+ AA + G+GR G + G V L A+ + L +G E EL
Sbjct: 63 RERNRQAAAANPENSRGKGRRGQRGKNRGCV-----LTAIHLNVTDLGLGYETKEELIFR 117
Query: 69 KANGSAVCEAA 79
+GS C+AA
Sbjct: 118 YCSGS--CDAA 126
>gi|4503975 glial cell derived neurotrophic factor isoform 1
preproprotein [Homo sapiens]
Length = 211
Score = 29.3 bits (64), Expect = 2.6
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 9 QEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTEFWVELNTY 68
+E NR+ AA + G+GR G + G V L A+ + L +G E EL
Sbjct: 89 RERNRQAAAANPENSRGKGRRGQRGKNRGCV-----LTAIHLNVTDLGLGYETKEELIFR 143
Query: 69 KANGSAVCEAA 79
+GS C+AA
Sbjct: 144 YCSGS--CDAA 152
>gi|37537696 M-phase phosphoprotein 9 [Homo sapiens]
Length = 1031
Score = 29.3 bits (64), Expect = 2.6
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 16/102 (15%)
Query: 71 NGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYF--KFFTTGENARI 128
N S+ E G+ K + W+ + V + C P + + N + K T E R
Sbjct: 906 NHSSCPEPVPNGVKKVSVRTAWEKNKSVSYEQCKPVSVTPQGNDFEYTAKIRTLAETERF 965
Query: 129 FQRTTKKGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYE 170
F TK+ + + A L R+ P P R+T +
Sbjct: 966 FDELTKE-----------KDQIEAALSRM---PSPGGRITLQ 993
>gi|31377722 PERP, TP53 apoptosis effector [Homo sapiens]
Length = 193
Score = 28.9 bits (63), Expect = 3.4
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 165 PRLTYEYSWSLGCGVGAGLILLLGAGC-FLLLTLPSW 200
P +TY Y+W+ G G A +IL+ GC F LP++
Sbjct: 143 PAVTYIYNWAYGFGWAATIILI---GCAFFFCCLPNY 176
>gi|5174405 voltage-dependent calcium channel gamma-2 subunit
[Homo sapiens]
Length = 323
Score = 28.9 bits (63), Expect = 3.4
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 19/61 (31%)
Query: 43 LLLAAVGA----TLAVLSVGTEFWV------------ELNTYKANGSAVCEAAHLGLWKA 86
+LL VGA +L ++VGT++W+ E T K N + H GLW+
Sbjct: 10 MLLTTVGAFAAFSLMTIAVGTDYWLYSRGVCKTKSVSENETSKKNEEVM---THSGLWRT 66
Query: 87 C 87
C
Sbjct: 67 C 67
>gi|239756061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 332
Score = 28.5 bits (62), Expect = 4.5
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 16 GAAGRRRAHGQGRSGLTPEREGKVKLALLL 45
G AGRR H +G GL PE G V++ LL
Sbjct: 134 GEAGRRHVHAEGDGGLEPE-HGDVEVIGLL 162
>gi|239750588 PREDICTED: hypothetical protein XP_002347440 [Homo
sapiens]
Length = 510
Score = 28.5 bits (62), Expect = 4.5
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 16 GAAGRRRAHGQGRSGLTPEREGKVKLALLL 45
G AGRR H +G GL PE G V++ LL
Sbjct: 134 GEAGRRHVHAEGDGGLEPE-HGDVEVIGLL 162
>gi|239744885 PREDICTED: hypothetical protein XP_002344275 [Homo
sapiens]
Length = 510
Score = 28.5 bits (62), Expect = 4.5
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 16 GAAGRRRAHGQGRSGLTPEREGKVKLALLL 45
G AGRR H +G GL PE G V++ LL
Sbjct: 134 GEAGRRHVHAEGDGGLEPE-HGDVEVIGLL 162
>gi|74275350 translocator protein isoform PBR [Homo sapiens]
Length = 169
Score = 28.1 bits (61), Expect = 5.8
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 161 PPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLLTLPSW---------PWGSLCPKRGH 211
PP P + + + SLGC VG+ + G + L PSW WG+L G+
Sbjct: 3 PPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGY 62
>gi|24497587 adenylate cyclase 4 [Homo sapiens]
Length = 1077
Score = 28.1 bits (61), Expect = 5.8
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 158 SPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLLTLPSWPWGS 204
SP PPP+ L YE +SL L+LLLG L L + W S
Sbjct: 6 SPRPPPSEDLFYETYYSLSQQYPL-LLLLLGIVLCALAALLAVAWAS 51
>gi|21361975 voltage-dependent calcium channel gamma-7 subunit
[Homo sapiens]
Length = 275
Score = 28.1 bits (61), Expect = 5.8
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 12/55 (21%)
Query: 41 LALLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCE--------AAHLGLWKAC 87
L+ + A G L ++V T++W+ Y G+ + + A H GLW+ C
Sbjct: 12 LSSVFGACGLLLVGIAVSTDYWL----YMEEGTVLPQNQTTEVKMALHAGLWRVC 62
>gi|169216064 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 27.7 bits (60), Expect = 7.6
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 15 RGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 60
RG +GRRR+ G+ + TP G V L++LL+ V+SVG +
Sbjct: 25 RGRSGRRRSLGRELAPGTPSDCG-VSLSVLLSGCPPRSLVVSVGAQ 69
>gi|169208488 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 27.7 bits (60), Expect = 7.6
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 147 RHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLLTLP 198
R S R L P RLT WS+ CG G+ + + A F L P
Sbjct: 79 RDSGRLLSALALPREAATGRLTVMLQWSVSCGGGSWFLWKIEANNFSLALNP 130
>gi|20336477 B-cell CLL/lymphoma 7C [Homo sapiens]
Length = 217
Score = 27.7 bits (60), Expect = 7.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 9 QEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALL 44
QEE RRR G R+ G+ R G G L LL
Sbjct: 55 QEEERRRAGGGAERSRGRERRGRGASPRGGGPLILL 90
>gi|15812196 F-box only protein 24 isoform 1 [Homo sapiens]
Length = 580
Score = 27.7 bits (60), Expect = 7.6
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 174 SLGCGVGAGLIL---------LLGAGCFLLLTLPSWPWGS 204
+L CG+ L+L LLG GC LP WP GS
Sbjct: 411 TLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGS 450
>gi|222080107 solute carrier family 23 (nucleobase transporters),
member 3 isoform 3 [Homo sapiens]
Length = 618
Score = 27.3 bits (59), Expect = 10.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 157 VSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLL 195
++P PPPAP+ +SW CG L G C L L
Sbjct: 20 LAPLPPPAPQNPSTHSWDPLCG-----SLPWGLSCLLAL 53
>gi|222080105 solute carrier family 23 (nucleobase transporters),
member 3 isoform 2 [Homo sapiens]
Length = 610
Score = 27.3 bits (59), Expect = 10.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 157 VSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLL 195
++P PPPAP+ +SW CG L G C L L
Sbjct: 20 LAPLPPPAPQNPSTHSWDPLCG-----SLPWGLSCLLAL 53
>gi|158635944 solute carrier family 23 (nucleobase transporters),
member 3 isoform 1 [Homo sapiens]
Length = 493
Score = 27.3 bits (59), Expect = 10.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 157 VSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLL 195
++P PPPAP+ +SW CG L G C L L
Sbjct: 20 LAPLPPPAPQNPSTHSWDPLCG-----SLPWGLSCLLAL 53
>gi|239753585 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 27.3 bits (59), Expect = 10.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 103 CGPAELPGEANCTYFKFFTTG 123
CG E P + NC+ F FF TG
Sbjct: 104 CGQGEGPRKRNCSEFCFFPTG 124
>gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo
sapiens]
Length = 217
Score = 27.3 bits (59), Expect = 10.0
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 15/66 (22%)
Query: 37 GKVKLALLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCE---------------AAHL 81
G A L A+ L ++GTEFW ++T + + ++H
Sbjct: 1 GLAGAAALTGALSFVLLAAAIGTEFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHS 60
Query: 82 GLWKAC 87
GLW+ C
Sbjct: 61 GLWRTC 66
>gi|239746628 PREDICTED: hypothetical protein XP_002344230 [Homo
sapiens]
Length = 227
Score = 27.3 bits (59), Expect = 10.0
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 34 EREGKVKLALLLAAVGATLAVLSVGTEFWVELNTYKANGSAVCEAAH 80
E EG + +L V +TLAVL + V A G A AAH
Sbjct: 155 EAEGLCRARVLREGVTSTLAVLQADSSLGVSSTRQTAAGGAARAAAH 201
>gi|145699133 KPL2 protein isoform 1 [Homo sapiens]
Length = 1822
Score = 27.3 bits (59), Expect = 10.0
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 106 AELPGEANCTYFKFFTTGENARIFQRTTKKGLLLLVSLEVFRHSVRALLQRVSPEPPPAP 165
AE+ E+ C K T E A+ + KK L E + + +L + P PPPAP
Sbjct: 863 AEIDKESLCEKVKEILTTEIAKKKNKVEKK----LEEKEAEKKAAASLAELPLPTPPPAP 918
>gi|124107616 claudin 23 [Homo sapiens]
Length = 292
Score = 27.3 bits (59), Expect = 10.0
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 136 GLLLLVSLEVFRHSV--RALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFL 193
GLL L+ + + H + R +L P PA +T + S+SL G +LLLG G L
Sbjct: 125 GLLGLIPVSWYNHFLGDRDVL------PAPASPVTVQVSYSLVLGYLGSCLLLLG-GFSL 177
Query: 194 LLTLPSW 200
L+ W
Sbjct: 178 ALSFAPW 184
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,598,123
Number of Sequences: 37866
Number of extensions: 443877
Number of successful extensions: 1597
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1567
Number of HSP's gapped (non-prelim): 41
length of query: 214
length of database: 18,247,518
effective HSP length: 98
effective length of query: 116
effective length of database: 14,536,650
effective search space: 1686251400
effective search space used: 1686251400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.