Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131405 Sequence: fasta or formatted (129aa) NCBI GI: 169216064
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         11           2
 C cysteine            3.1          4           1
 D aspartate           3.1          4           1
 E glutamate           6.2          8           2
 F phenylalanine       0.8          1           1
 G glycine            11.6         15           1
 H histidine           0.0          0           0
 I isoleucine          2.3          3           1
 K lysine              2.3          3           1
 L leucine            12.4         16           2
 M methionine          0.8          1           1
 N asparagine          1.6          2           1
 P proline             8.5         11           2
 Q glutamine           2.3          3           1
 R arginine           11.6         15           3
 S serine             13.2         17           1
 T threonine           3.1          4           1
 V valine              7.0          9           2
 W tryptophan          1.6          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
KBTBD11               0.034   kelch repeat and BTB (POZ) domain containing 11 [Homo...
COL29A1               0.021   collagen, type XXIX, alpha 1 
LOC100293812          0.021   PREDICTED: hypothetical protein 
LOC100289716          0.021   PREDICTED: hypothetical protein XP_002346898 
LOC100289949          0.021   PREDICTED: hypothetical protein XP_002346877 
LOC100289602          0.021   PREDICTED: hypothetical protein XP_002342755 
LOC100289602          0.021   PREDICTED: hypothetical protein 
COL7A1                0.021   alpha 1 type VII collagen precursor 
FBXW10                0.021   F-box and WD-40 domain protein 10 
LOC100291842          0.021   PREDICTED: hypothetical protein XP_002346016 
LOC100290358          0.021   PREDICTED: hypothetical protein XP_002346903 
LOC100294079          0.021   PREDICTED: hypothetical protein 
CASK                  0.021   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.021   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.021   calcium/calmodulin-dependent serine protein kinase ...
ERN2                  0.017   endoplasmic reticulum to nucleus signalling 2 [Homo...
COL3A1                0.017   collagen type III alpha 1 preproprotein 
ZNF687                0.017   zinc finger protein 687 
LOC100290437          0.013   PREDICTED: hypothetical protein XP_002346492 
KIFC1                 0.013   kinesin family member C1 
C9orf66               0.013   hypothetical protein LOC157983 
CACNG6                0.013   voltage-dependent calcium channel gamma-6 subunit is...
CACNG6                0.013   voltage-dependent calcium channel gamma-6 subunit is...
CACNG6                0.013   voltage-dependent calcium channel gamma-6 subunit is...
COL18A1               0.009   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
KRTAP10-1             0.009   keratin associated protein 10-1 
KIF25                 0.009   kinesin family member 25 isoform 2 
KIF25                 0.009   kinesin family member 25 isoform 1 
HMGCLL1               0.009   3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-l...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press