Guide to the Human Genome
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Name: CACNG1 Sequence: fasta or formatted (222aa) NCBI GI: 4502539
Description:

voltage-dependent calcium channel gamma-1 subunit

Referenced in:

Calcium and TRP Cation Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         19           3
 C cysteine            4.5         10           1
 D aspartate           3.2          7           2
 E glutamate           5.9         13           1
 F phenylalanine       6.3         14           1
 G glycine             5.0         11           2
 H histidine           3.2          7           2
 I isoleucine          6.8         15           2
 K lysine              4.1          9           2
 L leucine            11.3         25           3
 M methionine          4.5         10           1
 N asparagine          1.8          4           1
 P proline             4.5         10           1
 Q glutamine           1.4          3           1
 R arginine            4.5         10           1
 S serine              8.6         19           2
 T threonine           5.4         12           2
 V valine              5.4         12           2
 W tryptophan          2.3          5           1
 Y tyrosine            3.2          7           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   voltage-dependent calcium channel gamma-1 subunit [Ho... 
CACNG6                0.325   voltage-dependent calcium channel gamma-6 subunit is...
CACNG6                0.200   voltage-dependent calcium channel gamma-6 subunit is...
CACNG6                0.088   voltage-dependent calcium channel gamma-6 subunit is...
CACNG5                0.053   voltage-dependent calcium channel gamma-5 subunit is...
CACNG5                0.051   voltage-dependent calcium channel gamma-5 subunit iso...
CACNG2                0.046   voltage-dependent calcium channel gamma-2 subunit [Ho...
CACNG7                0.039   voltage-dependent calcium channel gamma-7 subunit [H...
CACNG4                0.030   voltage-dependent calcium channel gamma-4 subunit [Ho...
CACNG3                0.030   voltage-dependent calcium channel gamma-3 subunit [Ho...
LIM2                  0.028   lens intrinsic membrane protein 2, 19kDa isoform 2 ...
LIM2                  0.028   lens intrinsic membrane protein 2, 19kDa isoform 1 [...
PERP                  0.025   PERP, TP53 apoptosis effector 
CACNG8                0.023   voltage-dependent calcium channel gamma-8 subunit [H...
TMEM178               0.016   transmembrane protein 178 
TMEM114               0.014   PREDICTED: transmembrane protein 114 
TMEM114               0.014   transmembrane protein 114 
TMEM114               0.014   PREDICTED: transmembrane protein 114, partial [Homo...
CLDND1                0.014   claudin domain containing 1 protein isoform d 
CLDND1                0.014   claudin domain containing 1 protein isoform a 
CLDND1                0.014   claudin domain containing 1 protein isoform b 
CLDND1                0.014   claudin domain containing 1 protein isoform a 
CLDND1                0.014   claudin domain containing 1 protein isoform a 
CLDND1                0.014   claudin domain containing 1 protein isoform a 
PIGN                  0.012   phosphatidylinositol glycan anchor biosynthesis, clas...
PIGN                  0.012   phosphatidylinositol glycan anchor biosynthesis, cla...
LOC644070             0.009   PREDICTED: germ cell-specific gene 1-like protein 2...
LOC644070             0.009   PREDICTED: germ cell-specific gene 1-like protein 2...
LOC644070             0.009   PREDICTED: germ cell-specific gene 1-like protein 2...
EXTL1                 0.009   exostoses-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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