Guide to the Human Genome
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Name: CACNG4 Sequence: fasta or formatted (327aa) NCBI GI: 7656948
Description:

voltage-dependent calcium channel gamma-4 subunit

Referenced in:

Calcium and TRP Cation Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         23           2
 C cysteine            1.8          6           2
 D aspartate           5.2         17           2
 E glutamate           4.0         13           1
 F phenylalanine       4.6         15           2
 G glycine             7.3         24           2
 H histidine           2.4          8           1
 I isoleucine          7.0         23           2
 K lysine              4.0         13           2
 L leucine             9.2         30           4
 M methionine          2.8          9           1
 N asparagine          4.0         13           2
 P proline             4.3         14           3
 Q glutamine           1.5          5           2
 R arginine            8.0         26           4
 S serine             11.0         36           4
 T threonine           5.2         17           2
 V valine              4.9         16           1
 W tryptophan          0.9          3           1
 Y tyrosine            4.9         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   voltage-dependent calcium channel gamma-4 subunit [Ho... 
CACNG8                0.557   voltage-dependent calcium channel gamma-8 subunit [H...
CACNG2                0.553   voltage-dependent calcium channel gamma-2 subunit [Ho...
CACNG3                0.524   voltage-dependent calcium channel gamma-3 subunit [Ho...
CACNG5                0.157   voltage-dependent calcium channel gamma-5 subunit is...
CACNG5                0.143   voltage-dependent calcium channel gamma-5 subunit iso...
CACNG7                0.142   voltage-dependent calcium channel gamma-7 subunit [H...
TMEM114               0.049   PREDICTED: transmembrane protein 114 
TMEM114               0.049   transmembrane protein 114 
TMEM114               0.047   PREDICTED: transmembrane protein 114, partial [Homo...
GSG1                  0.022   germ cell associated 1 isoform 4 
GSG1                  0.022   germ cell associated 1 isoform 2 
CLDN10                0.020   claudin 10 isoform b 
CACNG1                0.020   voltage-dependent calcium channel gamma-1 subunit [Ho...
CLDN10                0.019   claudin 10 isoform a 
LIM2                  0.016   lens intrinsic membrane protein 2, 19kDa isoform 2 ...
CLDN18                0.016   claudin 18 isoform 2 
CLDN15                0.016   claudin 15 
CCNL2                 0.016   cyclin L2 isoform A 
CLDN18                0.016   claudin 18 isoform 1 
CLDN10                0.013   claudin 10 isoform a_i1 
TMEM178               0.013   transmembrane protein 178 
GSG1L                 0.013   GSG1-like isoform 1 
CACNG6                0.011   voltage-dependent calcium channel gamma-6 subunit is...
TMEM114               0.011   PREDICTED: transmembrane protein 114 
RNF8                  0.011   ring finger protein 8 isoform 2 
RNF8                  0.011   ring finger protein 8 isoform 1 
GSG1L                 0.011   GSG1-like isoform 2 
CLDN4                 0.011   claudin 4 
CACNG6                0.009   voltage-dependent calcium channel gamma-6 subunit is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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