Guide to the Human Genome
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Name: LOC100293006 Sequence: fasta or formatted (332aa) NCBI GI: 239756061
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         40           2
 C cysteine            0.9          3           1
 D aspartate           4.5         15           2
 E glutamate           5.1         17           2
 F phenylalanine       1.8          6           1
 G glycine            13.3         44           2
 H histidine           4.5         15           1
 I isoleucine          0.9          3           1
 K lysine              0.9          3           1
 L leucine            16.3         54           4
 M methionine          1.2          4           1
 N asparagine          0.9          3           1
 P proline             9.3         31           3
 Q glutamine           2.7          9           1
 R arginine            6.6         22           2
 S serine              4.8         16           3
 T threonine           1.8          6           1
 V valine             10.2         34           2
 W tryptophan          1.2          4           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291332          0.579   PREDICTED: hypothetical protein XP_002347440 
LOC100289447          0.579   PREDICTED: hypothetical protein XP_002344275 
ZNF219                0.015   zinc finger protein 219 
ZNF219                0.015   zinc finger protein 219 
ZNF219                0.015   zinc finger protein 219 
ABCB10                0.014   ATP-binding cassette, sub-family B, member 10 [Homo...
LOC100293085          0.008   PREDICTED: hypothetical protein 
LOC100289239          0.008   PREDICTED: hypothetical protein 
LOC100290159          0.008   PREDICTED: hypothetical protein XP_002346412 
LOC100289239          0.008   PREDICTED: hypothetical protein XP_002343068 
LOC100286999          0.008   PREDICTED: hypothetical protein XP_002342112 
MCL1                  0.006   myeloid cell leukemia sequence 1 isoform 1 
MCL1                  0.006   myeloid cell leukemia sequence 1 isoform 2 
FLJ46210              0.006   hypothetical protein LOC389152 
GRID2IP               0.005   glutamate receptor, ionotropic, delta 2 (Grid2) int...
EWSR1                 0.005   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.005   Ewing sarcoma breakpoint region 1 isoform 1 
H2BFM                 0.005   PREDICTED: H2B histone family, member M 
H2BFM                 0.005   PREDICTED: H2B histone family, member M 
C6orf25               0.005   G6B protein isoform G6b-G precursor 
C6orf25               0.005   G6B protein isoform G6b-B precursor 
C6orf25               0.005   G6B protein isoform G6b-A precursor 
DACT2                 0.005   dapper, antagonist of beta-catenin, homolog 2 [Homo...
CACNG6                0.005   voltage-dependent calcium channel gamma-6 subunit is...
CACNG6                0.005   voltage-dependent calcium channel gamma-6 subunit is...
CACNG6                0.005   voltage-dependent calcium channel gamma-6 subunit is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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