Guide to the Human Genome
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Name: LOC100292403 Sequence: fasta or formatted (138aa) NCBI GI: 239753585
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         14           2
 C cysteine            4.3          6           1
 D aspartate           0.0          0           0
 E glutamate           5.8          8           2
 F phenylalanine       4.3          6           2
 G glycine            13.8         19           2
 H histidine           1.4          2           1
 I isoleucine          0.7          1           1
 K lysine              2.2          3           1
 L leucine             9.4         13           3
 M methionine          0.7          1           1
 N asparagine          0.7          1           1
 P proline             6.5          9           1
 Q glutamine           4.3          6           2
 R arginine           11.6         16           2
 S serine             11.6         16           2
 T threonine           3.6          5           1
 V valine              5.1          7           1
 W tryptophan          2.2          3           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC402382             0.015   PREDICTED: similar to hCG2040468 
LOC100291588          0.011   PREDICTED: hypothetical protein XP_002345935 
LOC100290285          0.011   PREDICTED: hypothetical protein XP_002346836 
LOC100287767          0.011   PREDICTED: hypothetical protein XP_002342668 
DSG3                  0.008   desmoglein 3 preproprotein 
CACNG6                0.008   voltage-dependent calcium channel gamma-6 subunit is...
CACNG6                0.008   voltage-dependent calcium channel gamma-6 subunit is...
LOC100292600          0.008   PREDICTED: hypothetical protein 
LOC100290191          0.008   PREDICTED: hypothetical protein XP_002346744 
LOC100287993          0.008   PREDICTED: hypothetical protein XP_002344255 
LOC100289641          0.008   PREDICTED: hypothetical protein XP_002342602 
LOC731109             0.008   PREDICTED: hypothetical protein 
PKP4                  0.004   plakophilin 4 isoform b 
PKP4                  0.004   plakophilin 4 isoform a 
PAPLN                 0.004   papilin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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