Guide to the Human Genome
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Name: CLDN23 Sequence: fasta or formatted (292aa) NCBI GI: 124107616
Description:

claudin 23

Referenced in:

Gap Junctions and Tight Junctions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         20           2
 C cysteine            3.4         10           1
 D aspartate           5.1         15           1
 E glutamate           3.8         11           1
 F phenylalanine       2.7          8           1
 G glycine             8.6         25           2
 H histidine           1.4          4           1
 I isoleucine          1.0          3           1
 K lysine              2.7          8           1
 L leucine            13.7         40           4
 M methionine          2.1          6           1
 N asparagine          1.7          5           1
 P proline             9.9         29           3
 Q glutamine           4.1         12           1
 R arginine            6.5         19           4
 S serine              8.2         24           2
 T threonine           3.8         11           1
 V valine              8.9         26           2
 W tryptophan          2.7          8           1
 Y tyrosine            2.7          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   claudin 23 
CLDN9                 0.104   claudin 9 
CLDN4                 0.087   claudin 4 
CLDN6                 0.082   claudin 6 
CLDN7                 0.074   claudin 7 
CLDN14                0.072   claudin 14 
CLDN14                0.072   claudin 14 
CLDN14                0.072   claudin 14 
CLDN14                0.072   claudin 14 
CLDN14                0.072   claudin 14 
CLDN1                 0.072   claudin 1 
CLDN3                 0.070   claudin 3 
CLDN17                0.070   claudin 17 
CLDN15                0.070   claudin 15 
CLDN2                 0.067   claudin 2 
CLDN19                0.062   claudin 19 isoform a 
CLDN19                0.060   claudin 19 isoform b 
CLDN24                0.058   PREDICTED: claudin-24-like 
CLDN24                0.058   PREDICTED: claudin-24-like 
CLDN24                0.058   PREDICTED: claudin-24-like 
CLDN8                 0.055   claudin 8 
CLDN18                0.053   claudin 18 isoform 2 
LOC644672             0.050   claudin-like 
CLDN22                0.050   claudin 22 
CLDN5                 0.046   claudin 5 
CLDN5                 0.046   claudin 5 
CLDN18                0.046   claudin 18 isoform 1 
CLDN20                0.041   claudin 20 
CLDN10                0.032   claudin 10 isoform a 
CLDN10                0.031   claudin 10 isoform a_i1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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