Guide to the Human Genome
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Name: LOC100289447 Sequence: fasta or formatted (510aa) NCBI GI: 239744885
Description:

PREDICTED: hypothetical protein XP_002344275

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         53           2
 C cysteine            4.3         22           5
 D aspartate           4.1         21           2
 E glutamate           4.7         24           2
 F phenylalanine       2.9         15           1
 G glycine            12.4         63           2
 H histidine           4.1         21           2
 I isoleucine          2.5         13           2
 K lysine              2.0         10           1
 L leucine            12.5         64           4
 M methionine          1.6          8           1
 N asparagine          1.4          7           1
 P proline             8.8         45           3
 Q glutamine           2.2         11           1
 R arginine            5.1         26           2
 S serine              6.3         32           2
 T threonine           2.4         12           1
 V valine              9.4         48           2
 W tryptophan          2.0         10           1
 Y tyrosine            1.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344275 
LOC100291332          1.000   PREDICTED: hypothetical protein XP_002347440 
LOC100293006          0.359   PREDICTED: hypothetical protein 
MAGEE1                0.010   melanoma antigen family E, 1 
FOXH1                 0.008   forkhead box H1 
LOC100291878          0.008   PREDICTED: similar to RIKEN cDNA C230030N03 
PHF1                  0.008   PHD finger protein 1 isoform a 
RAD54L2               0.006   RAD54-like 2 
IRX2                  0.006   iroquois homeobox 2 
IRX2                  0.006   iroquois homeobox 2 
FUSSEL18              0.005   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.005   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.005   PREDICTED: functional smad suppressing element 18 [...
SMR3A                 0.005   submaxillary gland androgen regulated protein 3 homo...
BCORL1                0.005   BCL6 co-repressor-like 1 
C3orf36               0.005   hypothetical protein LOC80111 
LOC100293085          0.005   PREDICTED: hypothetical protein 
LOC100289239          0.005   PREDICTED: hypothetical protein 
LOC100290159          0.005   PREDICTED: hypothetical protein XP_002346412 
LOC100289239          0.005   PREDICTED: hypothetical protein XP_002343068 
LOC100286999          0.005   PREDICTED: hypothetical protein XP_002342112 
SMARCC1               0.005   SWI/SNF-related matrix-associated actin-dependent r...
LGALS3                0.005   galectin 3 
PRRT1                 0.005   NG5 protein 
MBOAT7                0.004   membrane bound O-acyltransferase domain containing ...
MBOAT7                0.004   membrane bound O-acyltransferase domain containing ...
LOC100292088          0.004   PREDICTED: hypothetical protein XP_002346321 
LOC100128572          0.004   PREDICTED: hypothetical protein 
LOC100294358          0.004   PREDICTED: hypothetical protein 
LOC100128572          0.004   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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