Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 21956641
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21956641 ISL LIM homeobox 2 [Homo sapiens]
(359 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21956641 ISL LIM homeobox 2 [Homo sapiens] 740 0.0
gi|115387114 islet-1 [Homo sapiens] 551 e-157
gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens] 181 7e-46
gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens] 181 7e-46
gi|30795196 LIM homeobox protein 2 [Homo sapiens] 177 1e-44
gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens] 177 2e-44
gi|28893581 LIM homeobox transcription factor 1, alpha isoform a... 175 6e-44
gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens] 164 1e-40
gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens] 164 1e-40
gi|30410785 LIM homeobox protein 1 [Homo sapiens] 164 1e-40
gi|11641283 LIM homeobox protein 5 [Homo sapiens] 161 7e-40
gi|15375314 LIM homeobox protein 4 [Homo sapiens] 160 2e-39
gi|50083287 LIM homeobox 8 [Homo sapiens] 159 5e-39
gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens] 158 8e-39
gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens] 158 8e-39
gi|5803072 LIM domain only 4 [Homo sapiens] 112 4e-25
gi|21361802 LIM domain only 3 [Homo sapiens] 107 2e-23
gi|47778935 LIM domain only 3 [Homo sapiens] 107 2e-23
gi|4505005 LIM domain only 1 [Homo sapiens] 105 5e-23
gi|214832219 LIM domain only 2 isoform 2 [Homo sapiens] 92 5e-19
gi|214832121 LIM domain only 2 isoform 2 [Homo sapiens] 92 5e-19
gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens] 92 5e-19
gi|4505001 LIM domain kinase 1 [Homo sapiens] 81 1e-15
gi|51173715 actin-binding LIM protein 1 isoform c [Homo sapiens] 81 2e-15
gi|51173713 actin-binding LIM protein 1 isoform b [Homo sapiens] 81 2e-15
gi|51173711 actin-binding LIM protein 1 isoform a [Homo sapiens] 81 2e-15
gi|7662330 actin binding LIM protein family, member 3 [Homo sapi... 75 9e-14
gi|5031869 LIM domain kinase 2 isoform 2a [Homo sapiens] 72 6e-13
gi|194272207 actin binding LIM protein family, member 2 isoform ... 71 1e-12
gi|153792514 actin binding LIM protein family, member 2 isoform ... 71 1e-12
>gi|21956641 ISL LIM homeobox 2 [Homo sapiens]
Length = 359
Score = 740 bits (1911), Expect = 0.0
Identities = 359/359 (100%), Positives = 359/359 (100%)
Query: 1 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQ 60
MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQ
Sbjct: 1 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQ 60
Query: 61 YLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVC 120
YLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVC
Sbjct: 61 YLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVC 120
Query: 121 SRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPAL 180
SRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPAL
Sbjct: 121 SRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPAL 180
Query: 181 RPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQ 240
RPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQ
Sbjct: 181 RPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQ 240
Query: 241 NKRCKDKKKSILMKQLQQQQHSDKTSLQGLTGTPLVAGSPIRHENAVQGSAVEVQTYQPP 300
NKRCKDKKKSILMKQLQQQQHSDKTSLQGLTGTPLVAGSPIRHENAVQGSAVEVQTYQPP
Sbjct: 241 NKRCKDKKKSILMKQLQQQQHSDKTSLQGLTGTPLVAGSPIRHENAVQGSAVEVQTYQPP 300
Query: 301 WKALSEFALQSDLDQPAFQQLVSFSESGSLGNSSGSDVTSLSSQLPDTPNSMVPSPVET 359
WKALSEFALQSDLDQPAFQQLVSFSESGSLGNSSGSDVTSLSSQLPDTPNSMVPSPVET
Sbjct: 301 WKALSEFALQSDLDQPAFQQLVSFSESGSLGNSSGSDVTSLSSQLPDTPNSMVPSPVET 359
>gi|115387114 islet-1 [Homo sapiens]
Length = 349
Score = 551 bits (1421), Expect = e-157
Identities = 264/349 (75%), Positives = 301/349 (86%), Gaps = 2/349 (0%)
Query: 11 LGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFV 70
+G MGD KKK ++CVGCG+QIHDQ+ILRVSPDLEWHAACLKCAEC+QYLDE+CTCFV
Sbjct: 1 MGDMGDPPKKKRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFV 60
Query: 71 RDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEF 130
RDGKTYCKRDY+RL+GIKCAKC +GFS +D VMRAR VYHIECFRC CSRQL+PGDEF
Sbjct: 61 RDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEF 120
Query: 131 SLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLP-DAGSGRQPALRPHVHKQTE 189
+LRE L CRADH ++ ERA+ G+ PL AR L + + S RQPALRPHVHKQ E
Sbjct: 121 ALREDGLFCRADHDVV-ERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPE 179
Query: 190 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKK 249
KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK+
Sbjct: 180 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 239
Query: 250 SILMKQLQQQQHSDKTSLQGLTGTPLVAGSPIRHENAVQGSAVEVQTYQPPWKALSEFAL 309
SI+MKQLQQQQ +DKT++QG+TGTP+VA SP RH+ +Q + VEVQ+YQPPWK LS+FAL
Sbjct: 240 SIMMKQLQQQQPNDKTNIQGMTGTPMVAASPERHDGGLQANPVEVQSYQPPWKVLSDFAL 299
Query: 310 QSDLDQPAFQQLVSFSESGSLGNSSGSDVTSLSSQLPDTPNSMVPSPVE 358
QSD+DQPAFQQLV+FSE G NS+GS+V S+SSQLPDTPNSMV SP+E
Sbjct: 300 QSDIDQPAFQQLVNFSEGGPGSNSTGSEVASMSSQLPDTPNSMVASPIE 348
>gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens]
Length = 397
Score = 181 bits (460), Expect = 7e-46
Identities = 104/283 (36%), Positives = 155/283 (54%), Gaps = 37/283 (13%)
Query: 18 SKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYC 77
S +KP A+C GCG +I D++ L ++ D +WH CLKC EC L+ TCF +DG YC
Sbjct: 64 SPEKP--ALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYC 120
Query: 78 KRDYVRLFGI-KCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHE 136
K DY R F + +CA+C +G S+S++VMRARDSVYH+ CF CS C++ L GD F +++
Sbjct: 121 KEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSL 180
Query: 137 LLCRADHGLLLE------------RAAAGSPRSP-----GPLPGAR---------GLHLP 170
+ CRA LL+ A +G P G + R G+ +
Sbjct: 181 VYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIV 240
Query: 171 DAGSGRQPALRPHVHKQ------TEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQL 224
+ SG H+ + ++KT R+RT QL T+++ +A N PDA +QL
Sbjct: 241 NYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 300
Query: 225 VEMTGLSPRVIRVWFQNKRCKDKKKSILMKQLQQQQHSDKTSL 267
+ TGL+ RV++VWFQN R K ++++L ++ +D TSL
Sbjct: 301 AQKTGLTKRVLQVWFQNARAK-FRRNLLRQENGGVDKADGTSL 342
>gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens]
Length = 388
Score = 181 bits (460), Expect = 7e-46
Identities = 104/283 (36%), Positives = 155/283 (54%), Gaps = 37/283 (13%)
Query: 18 SKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYC 77
S +KP A+C GCG +I D++ L ++ D +WH CLKC EC L+ TCF +DG YC
Sbjct: 55 SPEKP--ALCAGCGGKISDRYYL-LAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYC 111
Query: 78 KRDYVRLFGI-KCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHE 136
K DY R F + +CA+C +G S+S++VMRARDSVYH+ CF CS C++ L GD F +++
Sbjct: 112 KEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSL 171
Query: 137 LLCRADHGLLLE------------RAAAGSPRSP-----GPLPGAR---------GLHLP 170
+ CRA LL+ A +G P G + R G+ +
Sbjct: 172 VYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIV 231
Query: 171 DAGSGRQPALRPHVHKQ------TEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQL 224
+ SG H+ + ++KT R+RT QL T+++ +A N PDA +QL
Sbjct: 232 NYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 291
Query: 225 VEMTGLSPRVIRVWFQNKRCKDKKKSILMKQLQQQQHSDKTSL 267
+ TGL+ RV++VWFQN R K ++++L ++ +D TSL
Sbjct: 292 AQKTGLTKRVLQVWFQNARAK-FRRNLLRQENGGVDKADGTSL 333
>gi|30795196 LIM homeobox protein 2 [Homo sapiens]
Length = 406
Score = 177 bits (449), Expect = 1e-44
Identities = 106/300 (35%), Positives = 153/300 (51%), Gaps = 54/300 (18%)
Query: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRL 84
A+C GCG +I D++ L ++ D +WH CLKC EC L+ TCF +DG YCK DY R
Sbjct: 51 ALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRR 109
Query: 85 FGI-KCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
F + +CA+C +G S+S++VMRARD VYH+ CF C+ C++ L GD F +++ + CR
Sbjct: 110 FSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
Query: 144 GLLLE---------------RAAAGSPRSPG-PLPGARGLHLP----------------- 170
LL+ AAA + +S G GA L LP
Sbjct: 170 EALLQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK 229
Query: 171 DAGSGRQPAL----------------RPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANP 214
G G A R + ++KT R+RT QL T+++ +A N
Sbjct: 230 SPGPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINH 289
Query: 215 RPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKKSILMKQLQQQQHSDKTSLQGLTGTP 274
PDA +QL + TGL+ RV++VWFQN R K ++++L ++ S +LQ TGTP
Sbjct: 290 NPDAKDLKQLAQKTGLTKRVLQVWFQNARAK-FRRNLLRQENTGVDKSTDAALQ--TGTP 346
>gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens]
Length = 372
Score = 177 bits (448), Expect = 2e-44
Identities = 116/337 (34%), Positives = 172/337 (51%), Gaps = 22/337 (6%)
Query: 22 PGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
P A+C GC I D+F++RV+ + WH CL+CA C Q L T +C+ RD K YCK+DY
Sbjct: 28 PHPAVCEGCQRPISDRFLMRVN-ESSWHEECLQCAACQQAL--TTSCYFRDRKLYCKQDY 84
Query: 82 VRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRA 141
+LF KC+ C + ++ VMRA + VYH+ CF C VC RQL GDEF L+E +LLC+
Sbjct: 85 QQLFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKG 144
Query: 142 DHGLLLERAAAGSPRSPGPLPG--ARGLHLPDAGSGRQPALRPHVHKQTEKTTRVRTVLN 199
D+ + ++ SP + G P G G Q K + R RT+L
Sbjct: 145 DYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILT 204
Query: 200 EKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKKSILMKQLQQQ 259
+Q + + + +P ++E L TGLS RV++VWFQN+R K KK + +Q Q+Q
Sbjct: 205 TQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRHQQQQEQ 264
Query: 260 QHSDKTSLQGLTG---------TPLVAGSP--IRHENAVQGSAVEVQTYQPPWKALSEFA 308
Q+S + + L+ TPL + E + GS+ Q P + +
Sbjct: 265 QNSQRLGQEVLSSRMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGNDS 324
Query: 309 LQSDLDQPAFQQLVSFSESGSLGNSSGSDVTSLSSQL 345
+ D+D L S S+ LG+ SDV SL +++
Sbjct: 325 IFHDIDSDT--SLTSLSDC-FLGS---SDVGSLQARV 355
>gi|28893581 LIM homeobox transcription factor 1, alpha isoform a
[Homo sapiens]
Length = 382
Score = 175 bits (443), Expect = 6e-44
Identities = 99/256 (38%), Positives = 142/256 (55%), Gaps = 12/256 (4%)
Query: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRL 84
++C GC I D+F+LR++ D WH C++CA C + L+ TC F RD K YCK DY +L
Sbjct: 33 SVCEGCQRVILDRFLLRLN-DSFWHEQCVQCASCKEPLETTC--FYRDKKLYCKYDYEKL 89
Query: 85 FGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHG 144
F +KC C + ++ VMRA+ SVYH+ CF C VC RQL GDEF L+E +LLC+ D+
Sbjct: 90 FAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYE 149
Query: 145 LLLERAAAGSPRS--PGPLPGARGLHLPDAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQ 202
E + SP + G L G+G+ A HK+ + R RT+L +Q
Sbjct: 150 KERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGTAEEGKDHKRPK---RPRTILTTQQ 206
Query: 203 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKKSILMKQLQQQQHS 262
+ + + +P ++E L TGLS RV++VWFQN+R K KK + + QQQQ
Sbjct: 207 RRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKK----LARRQQQQQQ 262
Query: 263 DKTSLQGLTGTPLVAG 278
D+ + Q L+ G
Sbjct: 263 DQQNTQRLSSAQTNGG 278
>gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens]
Length = 397
Score = 164 bits (415), Expect = 1e-40
Identities = 115/342 (33%), Positives = 161/342 (47%), Gaps = 61/342 (17%)
Query: 26 MCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLF 85
+C GC I D+FIL+ D WH+ CLKC++C L E C F R YCK D+ + F
Sbjct: 30 LCAGCDQHILDRFILKAL-DRHWHSKCLKCSDCHTPLAERC--FSRGESVYCKDDFFKRF 86
Query: 86 GIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHG 144
G KCA CQ+G + +V RA+D VYH+ CF C VC RQL GDEF L E L+C+AD+
Sbjct: 87 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 146
Query: 145 LLLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLH 204
+R A + + P RT + KQL
Sbjct: 147 TAKQREAEATAKRP------------------------------------RTTITAKQLE 170
Query: 205 TLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK-KSILMKQLQQQQHSD 263
TL++ Y +P+P ++EQL TGL RV++VWFQN+R K+K+ K +Q Q +
Sbjct: 171 TLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRN 230
Query: 264 KTSLQGLTGTPLVAGSPIRHENAVQGSAVEVQTYQPPWKALSEF----ALQSDLDQPAFQ 319
+G GS ++ +G + + P +L+E L L +P Q
Sbjct: 231 MKRSRG--------GSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPT-Q 281
Query: 320 QLVSFSESGSLGNSS----GSDVTSLSSQL-PDTPNSMVPSP 356
L SG+LGN S G +L P +P + PSP
Sbjct: 282 AL--GRPSGALGNFSLEHGGLAGPEQYRELRPGSPYGVPPSP 321
>gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens]
Length = 402
Score = 164 bits (415), Expect = 1e-40
Identities = 115/342 (33%), Positives = 161/342 (47%), Gaps = 61/342 (17%)
Query: 26 MCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLF 85
+C GC I D+FIL+ D WH+ CLKC++C L E C F R YCK D+ + F
Sbjct: 35 LCAGCDQHILDRFILKAL-DRHWHSKCLKCSDCHTPLAERC--FSRGESVYCKDDFFKRF 91
Query: 86 GIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLRE-HELLCRADHG 144
G KCA CQ+G + +V RA+D VYH+ CF C VC RQL GDEF L E L+C+AD+
Sbjct: 92 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
Query: 145 LLLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLH 204
+R A + + P RT + KQL
Sbjct: 152 TAKQREAEATAKRP------------------------------------RTTITAKQLE 175
Query: 205 TLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK-KSILMKQLQQQQHSD 263
TL++ Y +P+P ++EQL TGL RV++VWFQN+R K+K+ K +Q Q +
Sbjct: 176 TLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRN 235
Query: 264 KTSLQGLTGTPLVAGSPIRHENAVQGSAVEVQTYQPPWKALSEF----ALQSDLDQPAFQ 319
+G GS ++ +G + + P +L+E L L +P Q
Sbjct: 236 MKRSRG--------GSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPT-Q 286
Query: 320 QLVSFSESGSLGNSS----GSDVTSLSSQL-PDTPNSMVPSP 356
L SG+LGN S G +L P +P + PSP
Sbjct: 287 AL--GRPSGALGNFSLEHGGLAGPEQYRELRPGSPYGVPPSP 326
>gi|30410785 LIM homeobox protein 1 [Homo sapiens]
Length = 406
Score = 164 bits (414), Expect = 1e-40
Identities = 96/247 (38%), Positives = 131/247 (53%), Gaps = 26/247 (10%)
Query: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
C GC I D+F+L V D WH C++C EC L E C F R+GK YCK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDFFRCFG 60
Query: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDE-FSLREHELLCRADH-- 143
KCA C G S SDLV RAR V+H+ CF C +C++QL G+E + + E++ +C+ D+
Sbjct: 61 TKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLS 120
Query: 144 ------GLLLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPALRPHVHKQTE-------- 189
L A GS P P ++ DA + E
Sbjct: 121 NSSVAKENSLHSATTGS--DPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGA 178
Query: 190 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKK 249
K RT + KQL TL+ +AA P+P ++EQL + TGL+ RVI+VWFQN+R K+++
Sbjct: 179 KRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERR- 237
Query: 250 SILMKQL 256
MKQL
Sbjct: 238 ---MKQL 241
>gi|11641283 LIM homeobox protein 5 [Homo sapiens]
Length = 402
Score = 161 bits (408), Expect = 7e-40
Identities = 95/252 (37%), Positives = 132/252 (52%), Gaps = 37/252 (14%)
Query: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
C GC I D+F+L V D WH C++C EC L E C F R+GK YCK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVL-DRAWHIKCVQCCECKTNLSEKC--FSREGKLYCKNDFFRRFG 61
Query: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDE-FSLREHELLCRADHGL 145
KCA C G S SDLV +AR V+H+ CF C VC++QL G+E + + E++ +C+ D+
Sbjct: 62 TKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY-- 119
Query: 146 LLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPALRPHVHKQTEKTTR------------ 193
+ S G L Q AL+ K+T+ +T
Sbjct: 120 -----LSSSSLKEGSLNSVSSCTDRSLSPDLQDALQDD-PKETDNSTSSDKETANNENEE 173
Query: 194 ---------VRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRC 244
RT + KQL TL+ +AA P+P ++EQL + TGL+ RVI+VWFQN+R
Sbjct: 174 QNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRS 233
Query: 245 KDKKKSILMKQL 256
K+++ MKQL
Sbjct: 234 KERR----MKQL 241
>gi|15375314 LIM homeobox protein 4 [Homo sapiens]
Length = 390
Score = 160 bits (405), Expect = 2e-39
Identities = 88/223 (39%), Positives = 117/223 (52%), Gaps = 39/223 (17%)
Query: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
C GC I D+FIL+V D WH++CLKCA+C L + C F R G YCK D+ + FG
Sbjct: 30 CAGCNQHILDKFILKVL-DRHWHSSCLKCADCQMQLADRC--FSRAGSVYCKEDFFKRFG 86
Query: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREH-ELLCRADHGL 145
KC CQ G + +V +A+D VYH+ CF C +C+RQL GDEF L E L+C+ D+
Sbjct: 87 TKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDY-- 144
Query: 146 LLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQLHT 205
E A G A RP RT + KQL T
Sbjct: 145 --ETAKQNDDSEAG-------------------AKRP------------RTTITAKQLET 171
Query: 206 LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
L+ Y +P+P ++EQL TGL RV++VWFQN+R K+K+
Sbjct: 172 LKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKR 214
>gi|50083287 LIM homeobox 8 [Homo sapiens]
Length = 356
Score = 159 bits (401), Expect = 5e-39
Identities = 85/236 (36%), Positives = 125/236 (52%), Gaps = 14/236 (5%)
Query: 13 AMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRD 72
+M S PG +C CG +I D+++L+V+ DL WH CL C+ C L +C+++D
Sbjct: 61 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVN-DLCWHVRCLSCSVCRTSLGRHTSCYIKD 119
Query: 73 GKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSL 132
+CK DY R +G +C++C S+D V RA+ +VYH+ CF C C RQL G+EF+L
Sbjct: 120 KDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFAL 179
Query: 133 REHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPALRPHVHKQTEKTT 192
E ++LCR + +L+ + G+ + A Q P K
Sbjct: 180 VEEKVLCRVHYDCMLDNLKR-------EVENGNGISVEGALLTEQDVNHPKPAK------ 226
Query: 193 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
R RT QL ++ +A + PDA ++L E TGLS RVI+VWFQN R + KK
Sbjct: 227 RARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKK 282
>gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens]
Length = 377
Score = 158 bits (399), Expect = 8e-39
Identities = 83/226 (36%), Positives = 124/226 (54%), Gaps = 15/226 (6%)
Query: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYV 82
G +C CG +I D+++L+V+ +L WH CL+C+ C L + +C++++ + +CK DY
Sbjct: 95 GKNICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYF 153
Query: 83 RLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRAD 142
FG KCA+C +SD V RAR + YH+ CF C C RQL G+EF L E ++LCR
Sbjct: 154 SRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIH 213
Query: 143 HGLLLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQ 202
+ ++E + GL L A Q + Q + R RT +Q
Sbjct: 214 YDTMIENLKRAA-------ENGNGLTLEGAVPSEQDS-------QPKPAKRARTSFTAEQ 259
Query: 203 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
L ++ +A + PDA ++L +MTGLS RVI+VWFQN R + KK
Sbjct: 260 LQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens]
Length = 392
Score = 158 bits (399), Expect = 8e-39
Identities = 83/226 (36%), Positives = 124/226 (54%), Gaps = 15/226 (6%)
Query: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYV 82
G +C CG +I D+++L+V+ +L WH CL+C+ C L + +C++++ + +CK DY
Sbjct: 95 GKNICSSCGLEILDRYLLKVN-NLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYF 153
Query: 83 RLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRAD 142
FG KCA+C +SD V RAR + YH+ CF C C RQL G+EF L E ++LCR
Sbjct: 154 SRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIH 213
Query: 143 HGLLLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPALRPHVHKQTEKTTRVRTVLNEKQ 202
+ ++E + GL L A Q + Q + R RT +Q
Sbjct: 214 YDTMIENLKRAA-------ENGNGLTLEGAVPSEQDS-------QPKPAKRARTSFTAEQ 259
Query: 203 LHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 248
L ++ +A + PDA ++L +MTGLS RVI+VWFQN R + KK
Sbjct: 260 LQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|5803072 LIM domain only 4 [Homo sapiens]
Length = 165
Score = 112 bits (281), Expect = 4e-25
Identities = 61/157 (38%), Positives = 83/157 (52%), Gaps = 10/157 (6%)
Query: 15 GDHSKKKPGTA------MCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCT- 67
G S+ P TA C GCG +I D+F+L + D WH+ CLKC+ C L + T
Sbjct: 5 GSSSQPPPVTAGSLSWKRCAGCGGKIADRFLL-YAMDSYWHSRCLKCSCCQAQLGDIGTS 63
Query: 68 CFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLL 125
C+ + G C+ DY+RLFG C+ C +S+LVMRA+ +VYH++CF CS C +L+
Sbjct: 64 CYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLV 123
Query: 126 PGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLP 162
PGD F L C D L S +S LP
Sbjct: 124 PGDRFHYINGSLFCEHDRPTALINGHLNSLQSNPLLP 160
>gi|21361802 LIM domain only 3 [Homo sapiens]
Length = 145
Score = 107 bits (267), Expect = 2e-23
Identities = 51/127 (40%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
C GC +I D+++L+ D WH CLKCA C L E T + + C+RDY+RLF
Sbjct: 13 CAGCNRKIKDRYLLKAL-DKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLF 71
Query: 86 GI--KCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
G+ CA C + ++VMRA+D+VYH++CF C +C+++ GD+F L+ + +LC+ D+
Sbjct: 72 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDY 131
Query: 144 --GLLLE 148
GL+ E
Sbjct: 132 EEGLMKE 138
>gi|47778935 LIM domain only 3 [Homo sapiens]
Length = 145
Score = 107 bits (267), Expect = 2e-23
Identities = 51/127 (40%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
C GC +I D+++L+ D WH CLKCA C L E T + + C+RDY+RLF
Sbjct: 13 CAGCNRKIKDRYLLKAL-DKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLF 71
Query: 86 GI--KCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
G+ CA C + ++VMRA+D+VYH++CF C +C+++ GD+F L+ + +LC+ D+
Sbjct: 72 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDY 131
Query: 144 --GLLLE 148
GL+ E
Sbjct: 132 EEGLMKE 138
>gi|4505005 LIM domain only 1 [Homo sapiens]
Length = 156
Score = 105 bits (263), Expect = 5e-23
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 4/120 (3%)
Query: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
C GC +I D+++L+ D WH CLKCA C L E T + + C+RDY+RLF
Sbjct: 24 CAGCNRKIKDRYLLKAL-DKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLF 82
Query: 86 GI--KCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
G CA C + ++VMRARD+VYH++CF C +C+++ GD+F L+ + +LC+ D+
Sbjct: 83 GTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDY 142
>gi|214832219 LIM domain only 2 isoform 2 [Homo sapiens]
Length = 158
Score = 92.4 bits (228), Expect = 5e-19
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 22 PGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCT-CFVRDGKTYCKRD 80
P C GC I D++ L+ D WH CL C C L E + + G+ C+RD
Sbjct: 25 PSLLTCGGCQQNIGDRYFLKAI-DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRD 83
Query: 81 YVRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELL 138
Y+RLFG CA C + ++ MR +D VYH+ECF+C+ C + GD + L +++
Sbjct: 84 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIV 143
Query: 139 CRAD 142
C D
Sbjct: 144 CEQD 147
>gi|214832121 LIM domain only 2 isoform 2 [Homo sapiens]
Length = 158
Score = 92.4 bits (228), Expect = 5e-19
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 22 PGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCT-CFVRDGKTYCKRD 80
P C GC I D++ L+ D WH CL C C L E + + G+ C+RD
Sbjct: 25 PSLLTCGGCQQNIGDRYFLKAI-DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRD 83
Query: 81 YVRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELL 138
Y+RLFG CA C + ++ MR +D VYH+ECF+C+ C + GD + L +++
Sbjct: 84 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIV 143
Query: 139 CRAD 142
C D
Sbjct: 144 CEQD 147
>gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
Length = 227
Score = 92.4 bits (228), Expect = 5e-19
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 22 PGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCT-CFVRDGKTYCKRD 80
P C GC I D++ L+ D WH CL C C L E + + G+ C+RD
Sbjct: 94 PSLLTCGGCQQNIGDRYFLKAI-DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRD 152
Query: 81 YVRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELL 138
Y+RLFG CA C + ++ MR +D VYH+ECF+C+ C + GD + L +++
Sbjct: 153 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIV 212
Query: 139 CRAD 142
C D
Sbjct: 213 CEQD 216
>gi|4505001 LIM domain kinase 1 [Homo sapiens]
Length = 647
Score = 81.3 bits (199), Expect = 1e-15
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 15/159 (9%)
Query: 14 MGDHSKKKPGTAMCVGCGSQIHD-QFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRD 72
MG+ + P +C CG +I+D Q++ ++ D WHA C +C +CS L + +D
Sbjct: 15 MGEEGSELP---VCASCGQRIYDGQYLQALNAD--WHADCFRCCDCSASLSHQY--YEKD 67
Query: 73 GKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSL 132
G+ +CK+DY +G C C + LVM A + YH ECF C C + GD ++L
Sbjct: 68 GQLFCKKDYWARYGESCHGCSEQITKG-LVMVAGELKYHPECFICLTCGTFIGDGDTYTL 126
Query: 133 REH-ELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLP 170
EH +L C + +P LP + G HLP
Sbjct: 127 VEHSKLYCGHCY-----YQTVVTPVIEQILPDSPGSHLP 160
>gi|51173715 actin-binding LIM protein 1 isoform c [Homo sapiens]
Length = 746
Score = 80.9 bits (198), Expect = 2e-15
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 14 MGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDG 73
M K+ ++ C GCG I + L ++ D +WH C KC C + L T +DG
Sbjct: 153 MSSSPKETTFSSNCAGCGRDIKNGQAL-LALDKQWHLGCFKCKSCGKVL--TGEYISKDG 209
Query: 74 KTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLR 133
YC++DY LFG+KC C + V+ A D YH C RCS C++ G+E L+
Sbjct: 210 APYCEKDYQGLFGVKCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQ 267
Score = 63.9 bits (154), Expect = 2e-10
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 17 HSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTY 76
H +KP C CG + +LRV +H C C C L + F+++G+
Sbjct: 30 HPSEKP-VIHCHKCGEPCKGE-VLRVQTK-HFHIKCFTCKVCGCDLAQG-GFFIKNGEYL 85
Query: 77 CKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHE 136
C DY R++G +C C G V+ A YH CF C++C R PGD + +
Sbjct: 86 CTLDYQRMYGTRCHGC--GEFVEGEVVTALGKTYHPNCFACTICKRPFPPGDRVTFNGRD 143
Query: 137 LLCR 140
LC+
Sbjct: 144 CLCQ 147
>gi|51173713 actin-binding LIM protein 1 isoform b [Homo sapiens]
Length = 718
Score = 80.9 bits (198), Expect = 2e-15
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 14 MGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDG 73
M K+ ++ C GCG I + L ++ D +WH C KC C + L T +DG
Sbjct: 153 MSSSPKETTFSSNCAGCGRDIKNGQAL-LALDKQWHLGCFKCKSCGKVL--TGEYISKDG 209
Query: 74 KTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLR 133
YC++DY LFG+KC C + V+ A D YH C RCS C++ G+E L+
Sbjct: 210 APYCEKDYQGLFGVKCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQ 267
Score = 63.9 bits (154), Expect = 2e-10
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 17 HSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTY 76
H +KP C CG + +LRV +H C C C L + F+++G+
Sbjct: 30 HPSEKP-VIHCHKCGEPCKGE-VLRVQTK-HFHIKCFTCKVCGCDLAQG-GFFIKNGEYL 85
Query: 77 CKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHE 136
C DY R++G +C C G V+ A YH CF C++C R PGD + +
Sbjct: 86 CTLDYQRMYGTRCHGC--GEFVEGEVVTALGKTYHPNCFACTICKRPFPPGDRVTFNGRD 143
Query: 137 LLCR 140
LC+
Sbjct: 144 CLCQ 147
>gi|51173711 actin-binding LIM protein 1 isoform a [Homo sapiens]
Length = 778
Score = 80.9 bits (198), Expect = 2e-15
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 14 MGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDG 73
M K+ ++ C GCG I + L ++ D +WH C KC C + L T +DG
Sbjct: 213 MSSSPKETTFSSNCAGCGRDIKNGQAL-LALDKQWHLGCFKCKSCGKVL--TGEYISKDG 269
Query: 74 KTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLR 133
YC++DY LFG+KC C + V+ A D YH C RCS C++ G+E L+
Sbjct: 270 APYCEKDYQGLFGVKCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQ 327
Score = 64.3 bits (155), Expect = 2e-10
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 8/134 (5%)
Query: 9 PFLGAMGD--HSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETC 66
PF+ D H +KP C CG + +LRV +H C C C L +
Sbjct: 80 PFVAHPQDPHHPSEKP-VIHCHKCGEPCKGE-VLRVQTK-HFHIKCFTCKVCGCDLAQG- 135
Query: 67 TCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLP 126
F+++G+ C DY R++G +C C G V+ A YH CF C++C R P
Sbjct: 136 GFFIKNGEYLCTLDYQRMYGTRCHGC--GEFVEGEVVTALGKTYHPNCFACTICKRPFPP 193
Query: 127 GDEFSLREHELLCR 140
GD + + LC+
Sbjct: 194 GDRVTFNGRDCLCQ 207
>gi|7662330 actin binding LIM protein family, member 3 [Homo
sapiens]
Length = 683
Score = 75.1 bits (183), Expect = 9e-14
Identities = 52/150 (34%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 23 GTAMCVGCGSQI-HDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
G + C GC +I H Q +L + D +WH +C KC CS L T +DG YC+ DY
Sbjct: 147 GPSHCAGCKEEIKHGQSLLAL--DKQWHVSCFKCQTCSVIL--TGEYISKDGVPYCESDY 202
Query: 82 VRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHEL---L 138
FGIKC C S V+ A YH C RC C + G+E L E+ +
Sbjct: 203 HAQFGIKCETCDRYISGR--VLEAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPI 260
Query: 139 C----RADHGLLLERAAAGSPRSPGPLPGA 164
C RA+ L R + S PG G+
Sbjct: 261 CKQAARAEKKLKHRRTSETSISPPGSSIGS 290
Score = 53.5 bits (127), Expect = 3e-07
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
C CG + ++RV + +H C C C L ++ F ++ + C +DY +L+G
Sbjct: 23 CYRCGDTCKGE-VVRVHNN-HFHIRCFTCQVCGCGLAQS-GFFFKNQEYICTQDYQQLYG 79
Query: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCR 140
+C C+ + V+ A YH +CF CS+C + GD+ + E +C+
Sbjct: 80 TRCDSCRDFITGE--VISALGRTYHPKCFVCSLCRKPFPIGDKVTFSGKECVCQ 131
>gi|5031869 LIM domain kinase 2 isoform 2a [Homo sapiens]
Length = 638
Score = 72.4 bits (176), Expect = 6e-13
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
C GCG I I + + WH +C +C+EC L T + +DGK YC +DY FG
Sbjct: 12 CPGCGDHIAPSQIWYRTVNETWHGSCFRCSECQDSL--TNWYYEKDGKLYCPKDYWGKFG 69
Query: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELL 138
C C + + +V A + YH ECF C C + GD ++L +H L
Sbjct: 70 EFCHGCSLLMTGPFMV--AGEFKYHPECFACMSCKVIIEDGDAYALVQHATL 119
Score = 29.6 bits (65), Expect = 4.4
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 88 KCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
+C C + S + R + +H CFRCS C L + + ++ +L C D+
Sbjct: 11 RCPGCGDHIAPSQIWYRTVNETWHGSCFRCSECQDSLT--NWYYEKDGKLYCPKDY 64
>gi|194272207 actin binding LIM protein family, member 2 isoform 7
[Homo sapiens]
Length = 470
Score = 71.2 bits (173), Expect = 1e-12
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 13 AMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRD 72
++G + G C GCG++I + L V+ D WH C KC C + L+ +D
Sbjct: 139 SVGSSAHLSQGLRSCGGCGTEIKNGQAL-VALDKHWHLGCFKCKSCGKLLN--AEYISKD 195
Query: 73 GKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSL 132
G YC+ DY FGI+C C+ + V+ A + YH C C C + G+E L
Sbjct: 196 GLPYCEADYHAKFGIRCDSCEKYITGR--VLEAGEKHYHPSCALCVRCGQMFAEGEEMYL 253
Query: 133 R 133
+
Sbjct: 254 Q 254
Score = 69.3 bits (168), Expect = 5e-12
Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 19 KKKPGTA-MCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYC 77
+K P TA +C CG+ + +LRV D +H C C C L E FVR G+ C
Sbjct: 15 EKSPSTAILCNTCGNVCKGE-VLRVQ-DKYFHIKCFVCKACGCDLAEG-GFFVRQGEYIC 71
Query: 78 KRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHEL 137
DY RL+G +C C V+ A YH +CF C+VC PGD + E
Sbjct: 72 TLDYQRLYGTRCFSCDQFIEGE--VVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKEC 129
Query: 138 LCR 140
+C+
Sbjct: 130 MCQ 132
Score = 28.9 bits (63), Expect = 7.5
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 22 PGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCT 67
P A+CV CG + + + WH AC + A ET T
Sbjct: 233 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRT 278
>gi|153792514 actin binding LIM protein family, member 2 isoform 6
[Homo sapiens]
Length = 521
Score = 71.2 bits (173), Expect = 1e-12
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 13 AMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRD 72
++G + G C GCG++I + L V+ D WH C KC C + L+ +D
Sbjct: 139 SVGSSAHLSQGLRSCGGCGTEIKNGQAL-VALDKHWHLGCFKCKSCGKLLN--AEYISKD 195
Query: 73 GKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSL 132
G YC+ DY FGI+C C+ + V+ A + YH C C C + G+E L
Sbjct: 196 GLPYCEADYHAKFGIRCDSCEKYITGR--VLEAGEKHYHPSCALCVRCGQMFAEGEEMYL 253
Query: 133 R 133
+
Sbjct: 254 Q 254
Score = 69.3 bits (168), Expect = 5e-12
Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 19 KKKPGTA-MCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYC 77
+K P TA +C CG+ + +LRV D +H C C C L E FVR G+ C
Sbjct: 15 EKSPSTAILCNTCGNVCKGE-VLRVQ-DKYFHIKCFVCKACGCDLAEG-GFFVRQGEYIC 71
Query: 78 KRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHEL 137
DY RL+G +C C V+ A YH +CF C+VC PGD + E
Sbjct: 72 TLDYQRLYGTRCFSCDQFIEGE--VVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKEC 129
Query: 138 LCR 140
+C+
Sbjct: 130 MCQ 132
Score = 28.9 bits (63), Expect = 7.5
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 22 PGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCT 67
P A+CV CG + + + WH AC + A ET T
Sbjct: 233 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDRNKETRT 278
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,776,834
Number of Sequences: 37866
Number of extensions: 810719
Number of successful extensions: 4151
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 3243
Number of HSP's gapped (non-prelim): 729
length of query: 359
length of database: 18,247,518
effective HSP length: 103
effective length of query: 256
effective length of database: 14,347,320
effective search space: 3672913920
effective search space used: 3672913920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.