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Search of human proteins with 218505670
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|218505670 epithelial cell adhesion molecule precursor [Homo
sapiens]
(314 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|218505670 epithelial cell adhesion molecule precursor [Homo s... 628 e-180
gi|166795236 tumor-associated calcium signal transducer 2 precur... 296 2e-80
gi|4759164 sparc/osteonectin, cwcv and kazal-like domains proteo... 43 4e-04
gi|7662036 sparc/osteonectin, cwcv and kazal-like domains proteo... 41 0.002
gi|93141003 testican 3 isoform 1 [Homo sapiens] 40 0.004
gi|93141001 testican 3 isoform 2 [Homo sapiens] 40 0.004
gi|78190498 secreted modular calcium-binding protein 1 isoform 1... 37 0.017
gi|11545873 secreted modular calcium-binding protein 1 isoform 2... 37 0.017
gi|115298674 nidogen 1 precursor [Homo sapiens] 37 0.017
gi|55770862 thyroglobulin [Homo sapiens] 37 0.023
gi|10834982 insulin-like growth factor binding protein 5 [Homo s... 37 0.023
gi|55925576 insulin-like growth factor binding protein 2, 36kDa ... 37 0.023
gi|62243068 insulin-like growth factor binding protein 3 isoform... 36 0.039
gi|62243248 insulin-like growth factor binding protein 3 isoform... 36 0.039
gi|144953895 nidogen 2 precursor [Homo sapiens] 36 0.039
gi|24308277 SPARC related modular calcium binding 2 [Homo sapiens] 36 0.039
gi|11321593 insulin-like growth factor binding protein 6 [Homo s... 34 0.15
gi|68448544 CD74 antigen isoform a [Homo sapiens] 34 0.15
gi|145580584 uromodulin-like 1 isoform 1 precursor [Homo sapiens] 34 0.19
gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens] 34 0.19
gi|50511928 Fc fragment of IgG, low affinity IIb, receptor isofo... 33 0.25
gi|50511930 Fc fragment of IgG, low affinity IIb, receptor isofo... 33 0.25
gi|219842266 usherin isoform B [Homo sapiens] 32 0.96
gi|219842259 usherin isoform A [Homo sapiens] 32 0.96
gi|4504615 insulin-like growth factor binding protein 1 precurso... 32 0.96
gi|148539835 dystroglycan 1 preproprotein [Homo sapiens] 31 1.6
gi|126116592 Fc fragment of IgG, low affinity IIc, receptor [Hom... 30 2.1
gi|50511926 Fc fragment of IgG, low affinity IIb, receptor isofo... 30 2.8
gi|50511932 Fc fragment of IgG, low affinity IIb, receptor isofo... 30 2.8
gi|62243290 insulin-like growth factor binding protein 4 precurs... 30 2.8
>gi|218505670 epithelial cell adhesion molecule precursor [Homo
sapiens]
Length = 314
Score = 628 bits (1619), Expect = e-180
Identities = 314/314 (100%), Positives = 314/314 (100%)
Query: 1 MAPPQVLAFGLLLAAATATFAAAQEECVCENYKLAVNCFVNNNRQCQCTSVGAQNTVICS 60
MAPPQVLAFGLLLAAATATFAAAQEECVCENYKLAVNCFVNNNRQCQCTSVGAQNTVICS
Sbjct: 1 MAPPQVLAFGLLLAAATATFAAAQEECVCENYKLAVNCFVNNNRQCQCTSVGAQNTVICS 60
Query: 61 KLAAKCLVMKAEMNGSKLGRRAKPEGALQNNDGLYDPDCDESGLFKAKQCNGTSMCWCVN 120
KLAAKCLVMKAEMNGSKLGRRAKPEGALQNNDGLYDPDCDESGLFKAKQCNGTSMCWCVN
Sbjct: 61 KLAAKCLVMKAEMNGSKLGRRAKPEGALQNNDGLYDPDCDESGLFKAKQCNGTSMCWCVN 120
Query: 121 TAGVRRTDKDTEITCSERVRTYWIIIELKHKAREKPYDSKSLRTALQKEITTRYQLDPKF 180
TAGVRRTDKDTEITCSERVRTYWIIIELKHKAREKPYDSKSLRTALQKEITTRYQLDPKF
Sbjct: 121 TAGVRRTDKDTEITCSERVRTYWIIIELKHKAREKPYDSKSLRTALQKEITTRYQLDPKF 180
Query: 181 ITSILYENNVITIDLVQNSSQKTQNDVDIADVAYYFEKDVKGESLFHSKKMDLTVNGEQL 240
ITSILYENNVITIDLVQNSSQKTQNDVDIADVAYYFEKDVKGESLFHSKKMDLTVNGEQL
Sbjct: 181 ITSILYENNVITIDLVQNSSQKTQNDVDIADVAYYFEKDVKGESLFHSKKMDLTVNGEQL 240
Query: 241 DLDPGQTLIYYVDEKAPEFSMQGLKAGVIAVIVVVVIAVVAGIVVLVISRKKRMAKYEKA 300
DLDPGQTLIYYVDEKAPEFSMQGLKAGVIAVIVVVVIAVVAGIVVLVISRKKRMAKYEKA
Sbjct: 241 DLDPGQTLIYYVDEKAPEFSMQGLKAGVIAVIVVVVIAVVAGIVVLVISRKKRMAKYEKA 300
Query: 301 EIKEMGEMHRELNA 314
EIKEMGEMHRELNA
Sbjct: 301 EIKEMGEMHRELNA 314
>gi|166795236 tumor-associated calcium signal transducer 2 precursor
[Homo sapiens]
Length = 323
Score = 296 bits (758), Expect = 2e-80
Identities = 156/313 (49%), Positives = 210/313 (67%), Gaps = 6/313 (1%)
Query: 3 PPQVLAFGLLLAAATATFAAAQEECVCENYKLAVNCFVNNNRQCQCTSVGAQNTVICSKL 62
PP L LL+ AA AAQ+ C C K+ V +CQC ++G+ V CS L
Sbjct: 10 PPLRLPLLLLVLAAVTGHTAAQDNCTCPTNKMTVCSPDGPGGRCQCRALGSGMAVDCSTL 69
Query: 63 AAKCLVMKAEMNGSKLGRR-AKP-EGALQNNDGLYDPDCDESGLFKAKQCNGTSMCWCVN 120
+KCL++KA M+ K R +P E AL +NDGLYDPDCD G FKA+QCN TS+CWCVN
Sbjct: 70 TSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPEGRFKARQCNQTSVCWCVN 129
Query: 121 TAGVRRTDK-DTEITCSERVRTYWIIIELKHKAREKPYDSKSLRTALQKEITTRYQLDPK 179
+ GVRRTDK D + C E VRT+ I+I+L+H+ ++ L L++ RY+L PK
Sbjct: 130 SVGVRRTDKGDLSLRCDELVRTHHILIDLRHRPTAGAFNHSDLDAELRRLFRERYRLHPK 189
Query: 180 FITSILYENNVITIDLVQNSSQKTQNDVDIADVAYYFEKDVKGESLFHSK-KMDLTVNGE 238
F+ ++ YE I I+L QN+SQK DVDI D AYYFE+D+KGESLF + +DL V GE
Sbjct: 190 FVAAVHYEQPTIQIELRQNTSQKAAGDVDIGDAAYYFERDIKGESLFQGRGGLDLRVRGE 249
Query: 239 QLDLDPGQTLIYYVDEKAPEFSMQGLKAGVIAVIVVVVIAVVAGIVVLVISRKKRMAKYE 298
L ++ +TLIYY+DE P+FSM+ L AG+IAVIVVVV+A+VAG+ VLVI+ +++ KY+
Sbjct: 250 PLQVE--RTLIYYLDEIPPKFSMKRLTAGLIAVIVVVVVALVAGMAVLVITNRRKSGKYK 307
Query: 299 KAEIKEMGEMHRE 311
K EIKE+GE+ +E
Sbjct: 308 KVEIKELGELRKE 320
>gi|4759164 sparc/osteonectin, cwcv and kazal-like domains
proteoglycan 1 precursor [Homo sapiens]
Length = 439
Score = 42.7 bits (99), Expect = 4e-04
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 93 GLYDPDCDESGLFKAKQCNG-TSMCWCVNTAG--VRRTDKDTEITCSERVRT 141
G + P C+E G +KA QC+G T CWCV+ G + + K ++C E T
Sbjct: 331 GAFIPRCNEEGYYKATQCHGSTGQCWCVDKYGNELAGSRKQGAVSCEEEQET 382
>gi|7662036 sparc/osteonectin, cwcv and kazal-like domains
proteoglycan (testican) 2 isoform 2 [Homo sapiens]
Length = 424
Score = 40.8 bits (94), Expect = 0.002
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 81 RAKPEGALQNNDGLYDPDCDESGLFKAKQCNGTS-MCWCVNTAGVRRTDKDT 131
R + + A + G++ P CDE G ++ QC+ +S CWCV+ G+ T T
Sbjct: 319 RIQIQEAAKKKPGIFIPSCDEDGYYRKMQCDQSSGDCWCVDQLGLELTGTRT 370
>gi|93141003 testican 3 isoform 1 [Homo sapiens]
Length = 433
Score = 39.7 bits (91), Expect = 0.004
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 22/96 (22%)
Query: 29 CENYKLAVNCFVNNNRQCQCTSVGAQNTVICSKLAAKCLVMKAEMNGSKLGRRAKPEGAL 88
C+ YK + ++NN C C Q C ++L K +G +
Sbjct: 289 CDTYK---DSLISNNEWCYCFQ--RQQDPPCQ---------------TELSNIQKRQG-V 327
Query: 89 QNNDGLYDPDCDESGLFKAKQCNGT-SMCWCVNTAG 123
+ G Y P CDE G +K QC+G+ CWCV+ G
Sbjct: 328 KKLLGQYIPLCDEDGYYKPTQCHGSVGQCWCVDRYG 363
>gi|93141001 testican 3 isoform 2 [Homo sapiens]
Length = 436
Score = 39.7 bits (91), Expect = 0.004
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 22/96 (22%)
Query: 29 CENYKLAVNCFVNNNRQCQCTSVGAQNTVICSKLAAKCLVMKAEMNGSKLGRRAKPEGAL 88
C+ YK + ++NN C C Q C ++L K +G +
Sbjct: 292 CDTYK---DSLISNNEWCYCFQ--RQQDPPCQ---------------TELSNIQKRQG-V 330
Query: 89 QNNDGLYDPDCDESGLFKAKQCNGT-SMCWCVNTAG 123
+ G Y P CDE G +K QC+G+ CWCV+ G
Sbjct: 331 KKLLGQYIPLCDEDGYYKPTQCHGSVGQCWCVDRYG 366
>gi|78190498 secreted modular calcium-binding protein 1 isoform 1
[Homo sapiens]
Length = 435
Score = 37.4 bits (85), Expect = 0.017
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 48 CTSVGAQNTVICSKLAAKCL-----------VMKAEMNGSKLGRRAKPEGALQNNDGLYD 96
C S G +C AKC A + +L R E A + + ++
Sbjct: 56 CASDGRSYESMCEYQRAKCRDPTLGVVHRGRCKDAGQSKCRLERAQALEQAKKPQEAVFV 115
Query: 97 PDCDESGLFKAKQCNG-TSMCWCVNTAG 123
P+C E G F QC+ T CWCV G
Sbjct: 116 PECGEDGSFTQVQCHTYTGYCWCVTPDG 143
Score = 36.6 bits (83), Expect = 0.030
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 80 RRAKPEGALQN-NDGLYDPDCDESGLFKAKQCN-GTSMCWCV 119
R++ E A QN +G+ P+C GL+K QC+ T CWCV
Sbjct: 231 RQSALEEAQQNPREGIVIPECAPGGLYKPVQCHQSTGYCWCV 272
>gi|11545873 secreted modular calcium-binding protein 1 isoform 2
[Homo sapiens]
Length = 434
Score = 37.4 bits (85), Expect = 0.017
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 48 CTSVGAQNTVICSKLAAKCL-----------VMKAEMNGSKLGRRAKPEGALQNNDGLYD 96
C S G +C AKC A + +L R E A + + ++
Sbjct: 56 CASDGRSYESMCEYQRAKCRDPTLGVVHRGRCKDAGQSKCRLERAQALEQAKKPQEAVFV 115
Query: 97 PDCDESGLFKAKQCNG-TSMCWCVNTAG 123
P+C E G F QC+ T CWCV G
Sbjct: 116 PECGEDGSFTQVQCHTYTGYCWCVTPDG 143
Score = 36.6 bits (83), Expect = 0.030
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 80 RRAKPEGALQN-NDGLYDPDCDESGLFKAKQCN-GTSMCWCV 119
R++ E A QN +G+ P+C GL+K QC+ T CWCV
Sbjct: 231 RQSALEEAQQNPREGIVIPECAPGGLYKPVQCHQSTGYCWCV 272
>gi|115298674 nidogen 1 precursor [Homo sapiens]
Length = 1247
Score = 37.4 bits (85), Expect = 0.017
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 93 GLYDPDCDESGLFKAKQCNG-TSMCWCVNTAG 123
GL+ P+CD G + QC+G T CWCV+ G
Sbjct: 872 GLFVPECDAHGHYAPTQCHGSTGYCWCVDRDG 903
>gi|55770862 thyroglobulin [Homo sapiens]
Length = 2768
Score = 37.0 bits (84), Expect = 0.023
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 22/98 (22%)
Query: 47 QCTSVGAQNTVICSKLAAKCLVMKAEMNGSKLGRRAKP-------------------EGA 87
QC G+ TV C C + A NGS++ +P G
Sbjct: 51 QCAEDGSFQTVQCQNDGRSCWCVGA--NGSEVLGSRQPGRPVACLSFCQLQKQQILLSGY 108
Query: 88 LQNNDGLYDPDCDESGLFKAKQCNGTSM-CWCVNTAGV 124
+ + D Y P C +SG + QC+ + CWCV+ G+
Sbjct: 109 INSTDTSYLPQCQDSGDYAPVQCDVQQVQCWCVDAEGM 146
Score = 35.0 bits (79), Expect = 0.086
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 93 GLYDPDCDESGLFKAKQCN-GTSMCWCVNTAG 123
G Y P CD G ++ QC+ GT CWCV+ G
Sbjct: 1025 GPYMPQCDAFGSWEPVQCHAGTGHCWCVDEKG 1056
Score = 33.5 bits (75), Expect = 0.25
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 95 YDPDCDESGLFKAKQCNGTSMCWCVNTAG 123
Y P C +G ++A QC CWCV+ G
Sbjct: 315 YVPSCRRNGDYQAVQCQTEGPCWCVDAQG 343
Score = 32.3 bits (72), Expect = 0.56
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 95 YDPDCDESGLFKAKQC-NGTSMCWCVNTAG 123
Y P C E G F+ QC N CWCV G
Sbjct: 48 YVPQCAEDGSFQTVQCQNDGRSCWCVGANG 77
Score = 30.0 bits (66), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 89 QNNDGLYDPDCDESGLFKAKQCNGTSMCWCVNTAG 123
Q + L+ P C G ++ QC + CWCVN+ G
Sbjct: 610 QTPERLFVPSCTTEGSYEDVQCF-SGECWCVNSWG 643
>gi|10834982 insulin-like growth factor binding protein 5 [Homo
sapiens]
Length = 272
Score = 37.0 bits (84), Expect = 0.023
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 69 MKAEMNGSKLGRRAKPEGALQNNDGLYDPDCDESGLFKAKQCNGT-----SMCWCVNTAG 123
M+A + K R P +Y P+CD G +K KQC + +CWCV+ G
Sbjct: 196 MEASLQELKASPRMVPRA-------VYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYG 248
Query: 124 VR 125
++
Sbjct: 249 MK 250
>gi|55925576 insulin-like growth factor binding protein 2, 36kDa
[Homo sapiens]
Length = 328
Score = 37.0 bits (84), Expect = 0.023
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 86 GALQNNDGLYDPDCDESGLFKAKQC----NG-TSMCWCVN 120
G L++ L+ P+CD+ GL+ KQC NG CWCVN
Sbjct: 251 GPLEHLYSLHIPNCDKHGLYNLKQCKMSLNGQRGECWCVN 290
>gi|62243068 insulin-like growth factor binding protein 3 isoform b
precursor [Homo sapiens]
Length = 291
Score = 36.2 bits (82), Expect = 0.039
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 93 GLYDPDCDESGLFKAKQCNGT-----SMCWCVNTAG 123
G++ P+CD+ G +K KQC + CWCV+ G
Sbjct: 234 GVHIPNCDKKGFYKKKQCRPSKGRKRGFCWCVDKYG 269
>gi|62243248 insulin-like growth factor binding protein 3 isoform a
precursor [Homo sapiens]
Length = 297
Score = 36.2 bits (82), Expect = 0.039
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 93 GLYDPDCDESGLFKAKQCNGT-----SMCWCVNTAG 123
G++ P+CD+ G +K KQC + CWCV+ G
Sbjct: 240 GVHIPNCDKKGFYKKKQCRPSKGRKRGFCWCVDKYG 275
>gi|144953895 nidogen 2 precursor [Homo sapiens]
Length = 1375
Score = 36.2 bits (82), Expect = 0.039
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 97 PDCDESGLFKAKQCNG-TSMCWCVNTAG 123
P CDE G F QC+G T CWCV+ G
Sbjct: 961 PQCDEQGNFLPLQCHGSTGFCWCVDPDG 988
Score = 35.8 bits (81), Expect = 0.051
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 92 DGLYDPDCDESGLFKAKQCNGTS-MCWCVNTAG 123
D Y P CD+ G F QC+G S CWCV+ G
Sbjct: 1036 DDQYVPQCDDLGHFIPLQCHGKSDFCWCVDKDG 1068
>gi|24308277 SPARC related modular calcium binding 2 [Homo sapiens]
Length = 457
Score = 36.2 bits (82), Expect = 0.039
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 82 AKPEGALQNNDGLYDPDCDESGLFKAKQCN-GTSMCWCV 119
A E ND + P+C GL+K QC+ T CWCV
Sbjct: 234 ALEEAKQPKNDNVVIPECAHGGLYKPVQCHPSTGYCWCV 272
Score = 33.1 bits (74), Expect = 0.33
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 80 RRAKPEGALQNNDGLYDPDCDESGLFKAKQCNG-TSMCWCVNTAG 123
R+ E A + ++ P+C++ G + QC+ T CWCV G
Sbjct: 94 RKYTQEQARKEFQQVFIPECNDDGTYSQVQCHSYTGYCWCVTPNG 138
>gi|11321593 insulin-like growth factor binding protein 6 [Homo
sapiens]
Length = 240
Score = 34.3 bits (77), Expect = 0.15
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 94 LYDPDCDESGLFKAKQCNGT-----SMCWCVNTAG 123
LY P+CD G ++ +QC + CWCV+ G
Sbjct: 185 LYVPNCDHRGFYRKRQCRSSQGQRRGPCWCVDRMG 219
>gi|68448544 CD74 antigen isoform a [Homo sapiens]
Length = 296
Score = 34.3 bits (77), Expect = 0.15
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 93 GLYDPDCDESGLFKAKQCNGT-SMCWCV--NTAGVRRTDKDTEITCSE 137
G + P CDE+G + QC G+ CWCV N V T CSE
Sbjct: 226 GSFRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNTRSRGHHNCSE 273
>gi|145580584 uromodulin-like 1 isoform 1 precursor [Homo sapiens]
Length = 1318
Score = 33.9 bits (76), Expect = 0.19
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 254 EKAPEFSMQGLKAGVIAVIVVVVIAVVAGIVVLVISRKKRM 294
E P + GL AG + +IVV + +VAG L+I R +RM
Sbjct: 1258 EGEPPHAEAGLGAGYVVLIVVAIFVLVAGTATLLIVRYQRM 1298
>gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens]
Length = 1446
Score = 33.9 bits (76), Expect = 0.19
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 254 EKAPEFSMQGLKAGVIAVIVVVVIAVVAGIVVLVISRKKRM 294
E P + GL AG + +IVV + +VAG L+I R +RM
Sbjct: 1386 EGEPPHAEAGLGAGYVVLIVVAIFVLVAGTATLLIVRYQRM 1426
>gi|50511928 Fc fragment of IgG, low affinity IIb, receptor isoform
4 [Homo sapiens]
Length = 309
Score = 33.5 bits (75), Expect = 0.25
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 255 KAPEFSMQGLKAGVIAVIV-VVVIAVVAGIVVLVISRKKRMAKYE-KAEIKEMGE 307
+AP S G+ ++AV+ + V A+VA +V L+ RKKR++ E +EMGE
Sbjct: 214 QAPSSSPMGI---IVAVVTGIAVAAIVAAVVALIYCRKKRISALPGYPECREMGE 265
>gi|50511930 Fc fragment of IgG, low affinity IIb, receptor isoform
1 [Homo sapiens]
Length = 310
Score = 33.5 bits (75), Expect = 0.25
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 255 KAPEFSMQGLKAGVIAVIV-VVVIAVVAGIVVLVISRKKRMAKYE-KAEIKEMGE 307
+AP S G+ ++AV+ + V A+VA +V L+ RKKR++ E +EMGE
Sbjct: 215 QAPSSSPMGI---IVAVVTGIAVAAIVAAVVALIYCRKKRISALPGYPECREMGE 266
>gi|219842266 usherin isoform B [Homo sapiens]
Length = 5202
Score = 31.6 bits (70), Expect = 0.96
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 40 VNNNRQCQCTSVGAQNTVICSKLAAKCLVMKAEMNGSKLGRRAKPEGAL-QNNDGLYDP- 97
V N + C C + G+ +C+ +C + K + G + + + L QNN L P
Sbjct: 789 VTNCKACDCDTAGSLPGTVCNAKTGQC-ICKPNVEGRQCNKCLEGNFYLRQNNSFLCLPC 847
Query: 98 DCDESGLFKAK-QCN-GTSMCWC-VNTAGVR 125
+CD++G CN T C C + G+R
Sbjct: 848 NCDKTGTINGSLLCNKSTGQCPCKLGVTGLR 878
Score = 29.3 bits (64), Expect = 4.7
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 26 ECVCENYKLAVNCFVNNNRQCQCTSVGAQNTVICSKLAAKCL 67
+C Y L ++ F + + C+C S+G IC ++ +CL
Sbjct: 881 QCEPHRYNLTIDNF-QHCQMCECDSLGTLPGTICDPISGQCL 921
>gi|219842259 usherin isoform A [Homo sapiens]
Length = 1546
Score = 31.6 bits (70), Expect = 0.96
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 40 VNNNRQCQCTSVGAQNTVICSKLAAKCLVMKAEMNGSKLGRRAKPEGAL-QNNDGLYDP- 97
V N + C C + G+ +C+ +C + K + G + + + L QNN L P
Sbjct: 789 VTNCKACDCDTAGSLPGTVCNAKTGQC-ICKPNVEGRQCNKCLEGNFYLRQNNSFLCLPC 847
Query: 98 DCDESGLFKAK-QCN-GTSMCWC-VNTAGVR 125
+CD++G CN T C C + G+R
Sbjct: 848 NCDKTGTINGSLLCNKSTGQCPCKLGVTGLR 878
Score = 29.3 bits (64), Expect = 4.7
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 26 ECVCENYKLAVNCFVNNNRQCQCTSVGAQNTVICSKLAAKCL 67
+C Y L ++ F + + C+C S+G IC ++ +CL
Sbjct: 881 QCEPHRYNLTIDNF-QHCQMCECDSLGTLPGTICDPISGQCL 921
>gi|4504615 insulin-like growth factor binding protein 1 precursor
[Homo sapiens]
Length = 259
Score = 31.6 bits (70), Expect = 0.96
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 95 YDPDCDESGLFKAKQCNGT-----SMCWCVNTAGVRRTDKDTEITCSERVRTYW 143
Y P+C+++G + ++QC + +CWCV +R EI + Y+
Sbjct: 202 YLPNCNKNGFYHSRQCETSMDGEAGLCWCVYPWNGKRIPGSPEIRGDPNCQIYF 255
>gi|148539835 dystroglycan 1 preproprotein [Homo sapiens]
Length = 895
Score = 30.8 bits (68), Expect = 1.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 268 VIAVIVVVVIAVVAGIVVLVISRKKRMAK 296
VI +VV I ++AGI+ ++ RKKR K
Sbjct: 754 VIPAVVVAAILLIAGIIAMICYRKKRKGK 782
>gi|126116592 Fc fragment of IgG, low affinity IIc, receptor [Homo
sapiens]
Length = 323
Score = 30.4 bits (67), Expect = 2.1
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 255 KAPEFSMQGLKAGVIAVIV-VVVIAVVAGIVVLVISRKKRMAKYEKAEIK 303
+AP S G+ ++AV+ + V A+VA +V L+ RKKR++ +K
Sbjct: 215 QAPSSSPMGI---IVAVVTGIAVAAIVAAVVALIYCRKKRISANSTDPVK 261
>gi|50511926 Fc fragment of IgG, low affinity IIb, receptor isoform
3 [Homo sapiens]
Length = 291
Score = 30.0 bits (66), Expect = 2.8
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 255 KAPEFSMQGLKAGVIAVIV-VVVIAVVAGIVVLVISRKKRMA 295
+AP S G+ ++AV+ + V A+VA +V L+ RKKR++
Sbjct: 215 QAPSSSPMGI---IVAVVTGIAVAAIVAAVVALIYCRKKRIS 253
>gi|50511932 Fc fragment of IgG, low affinity IIb, receptor isoform
2 [Homo sapiens]
Length = 290
Score = 30.0 bits (66), Expect = 2.8
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 255 KAPEFSMQGLKAGVIAVIV-VVVIAVVAGIVVLVISRKKRMA 295
+AP S G+ ++AV+ + V A+VA +V L+ RKKR++
Sbjct: 214 QAPSSSPMGI---IVAVVTGIAVAAIVAAVVALIYCRKKRIS 252
>gi|62243290 insulin-like growth factor binding protein 4 precursor
[Homo sapiens]
Length = 258
Score = 30.0 bits (66), Expect = 2.8
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 97 PDCDESGLFKAKQCNGT-----SMCWCVN 120
P+CD +G F KQC+ CWCV+
Sbjct: 202 PNCDRNGNFHPKQCHPALDGQRGKCWCVD 230
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,697,247
Number of Sequences: 37866
Number of extensions: 438331
Number of successful extensions: 1350
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1281
Number of HSP's gapped (non-prelim): 85
length of query: 314
length of database: 18,247,518
effective HSP length: 102
effective length of query: 212
effective length of database: 14,385,186
effective search space: 3049659432
effective search space used: 3049659432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.