Guide to the Human Genome
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Name: AKAP4 Sequence: fasta or formatted (854aa) NCBI GI: 21493037
Description:

A-kinase anchor protein 4 isoform 1

Referenced in:

Cyclic Nucleotides

Other entries for this name:
alt prot [845aa] A-kinase anchor protein 4 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         64           2
 C cysteine            2.9         25           1
 D aspartate           5.7         49           2
 E glutamate           7.5         64           2
 F phenylalanine       1.8         15           1
 G glycine             5.4         46           3
 H histidine           2.1         18           2
 I isoleucine          3.7         32           2
 K lysine              9.7         83           2
 L leucine             8.8         75           2
 M methionine          4.0         34           2
 N asparagine          5.0         43           3
 P proline             3.5         30           2
 Q glutamine           6.1         52           2
 R arginine            3.0         26           1
 S serine             10.9         93           4
 T threonine           4.0         34           2
 V valine              5.3         45           2
 W tryptophan          0.7          6           1
 Y tyrosine            2.3         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   A-kinase anchor protein 4 isoform 1 
AKAP4                 0.989   A-kinase anchor protein 4 isoform 2 
AKAP3                 0.201   A-kinase anchor protein 3 
SPHKAP                0.019   sphingosine kinase type 1-interacting protein isofo...
SPHKAP                0.018   sphingosine kinase type 1-interacting protein isofo...
AKAP11                0.016   A-kinase anchor protein 11 
IFFO1                 0.006   intermediate filament family orphan isoform 4 
ZFP106                0.006   zinc finger protein 106 homolog 
KIF5C                 0.005   kinesin family member 5C 
RIF1                  0.005   RAP1 interacting factor 1 
ANKRD11               0.005   ankyrin repeat domain 11 
JMJD1C                0.005   jumonji domain containing 1C isoform a 
JMJD1C                0.005   jumonji domain containing 1C isoform b 
HUWE1                 0.004   HECT, UBA and WWE domain containing 1 
ZNF676                0.004   zinc finger protein 676 
TTN                   0.004   titin isoform novex-3 
TTN                   0.004   titin isoform N2-A 
TTN                   0.004   titin isoform novex-2 
TTN                   0.004   titin isoform novex-1 
TTN                   0.004   titin isoform N2-B 
USP31                 0.004   ubiquitin specific peptidase 31 
RGS3                  0.004   regulator of G-protein signalling 3 isoform 6 [Homo...
RGS3                  0.004   regulator of G-protein signalling 3 isoform 2 
RGS3                  0.004   regulator of G-protein signalling 3 isoform 1 
ATXN3L                0.004   ataxin 3-like 
ZNF394                0.004   zinc finger protein 394 
EIF4G3                0.004   eukaryotic translation initiation factor 4 gamma, 3 ...
C1orf115              0.004   hypothetical protein LOC79762 
DST                   0.004   dystonin isoform 1e precursor 
PRAGMIN               0.004   pragmin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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