Guide to the Human Genome
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Name: APLP2 Sequence: fasta or formatted (522aa) NCBI GI: 214010185
Description:

amyloid beta (A4) precursor-like protein 2 isoform 4

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt prot [751aa] amyloid beta (A4) precursor-like protein 2 isoform 2
alt prot [695aa] amyloid beta (A4) precursor-like protein 2 isoform 3
alt prot [763aa] amyloid beta (A4) precursor-like protein 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         49           5
 C cysteine            1.1          6           1
 D aspartate           4.2         22           2
 E glutamate          10.9         57           3
 F phenylalanine       2.7         14           1
 G glycine             4.2         22           2
 H histidine           3.1         16           1
 I isoleucine          5.0         26           1
 K lysine              5.4         28           2
 L leucine             9.6         50           6
 M methionine          3.4         18           1
 N asparagine          4.2         22           1
 P proline             5.2         27           2
 Q glutamine           5.9         31           2
 R arginine            6.1         32           3
 S serine              4.4         23           3
 T threonine           4.8         25           1
 V valine              7.3         38           1
 W tryptophan          0.6          3           1
 Y tyrosine            2.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amyloid beta (A4) precursor-like protein 2 isoform ... 
APLP2                 0.734   amyloid beta (A4) precursor-like protein 2 isoform ...
APLP2                 0.732   amyloid beta (A4) precursor-like protein 2 isoform ...
APLP2                 0.725   amyloid beta (A4) precursor-like protein 2 isoform 1 ...
APP                   0.355   amyloid beta A4 protein isoform c precursor 
APP                   0.355   amyloid beta A4 protein isoform e precursor 
APP                   0.355   amyloid beta A4 protein isoform b precursor 
APP                   0.354   amyloid beta A4 protein isoform a precursor 
APP                   0.354   amyloid beta A4 protein isoform f precursor 
APLP1                 0.275   amyloid precursor-like protein 1 isoform 2 precursor ...
APLP1                 0.274   amyloid precursor-like protein 1 isoform 1 precursor...
FAM184A               0.030   hypothetical protein LOC79632 isoform 2 
FAM184A               0.030   hypothetical protein LOC79632 isoform 1 
ZNF853                0.022   zinc finger protein 853 
EPSTI1                0.022   epithelial stromal interaction 1 isoform 1 
GCOM1                 0.019   GRINL1A combined protein isoform 1 
CLIP1                 0.019   restin isoform b 
CLIP1                 0.019   restin isoform a 
MYO10                 0.018   myosin X 
CCDC147               0.018   coiled-coil domain containing 147 
EPSTI1                0.018   epithelial stromal interaction 1 isoform 2 
CDC2L2                0.017   cell division cycle 2-like 2 isoform 1 
DEF6                  0.017   differentially expressed in FDCP 6 homolog 
RRBP1                 0.017   ribosome binding protein 1 
RRBP1                 0.017   ribosome binding protein 1 
CEP164                0.017   centrosomal protein 164kDa 
MAP4K4                0.016   mitogen-activated protein kinase kinase kinase kinas...
DCTN1                 0.015   dynactin 1 isoform 4 
DCTN1                 0.015   dynactin 1 isoform 3 
DCTN1                 0.015   dynactin 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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