Guide to the Human Genome
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Name: APLP1 Sequence: fasta or formatted (650aa) NCBI GI: 4885065
Description:

amyloid precursor-like protein 1 isoform 2 precursor

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt prot [651aa] amyloid precursor-like protein 1 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         51           2
 C cysteine            1.8         12           2
 D aspartate           4.0         26           2
 E glutamate          10.3         67           5
 F phenylalanine       2.2         14           1
 G glycine             7.8         51           3
 H histidine           3.4         22           2
 I isoleucine          2.5         16           1
 K lysine              2.2         14           2
 L leucine            10.8         70           6
 M methionine          2.5         16           1
 N asparagine          1.5         10           1
 P proline             9.4         61           3
 Q glutamine           7.1         46           2
 R arginine            8.8         57           2
 S serine              6.6         43           2
 T threonine           3.5         23           1
 V valine              5.5         36           2
 W tryptophan          0.6          4           1
 Y tyrosine            1.7         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amyloid precursor-like protein 1 isoform 2 precursor ... 
APLP1                 0.997   amyloid precursor-like protein 1 isoform 1 precursor...
APLP2                 0.346   amyloid beta (A4) precursor-like protein 2 isoform ...
APP                   0.322   amyloid beta A4 protein isoform c precursor 
APP                   0.283   amyloid beta A4 protein isoform e precursor 
APP                   0.256   amyloid beta A4 protein isoform b precursor 
APLP2                 0.214   amyloid beta (A4) precursor-like protein 2 isoform ...
APLP2                 0.214   amyloid beta (A4) precursor-like protein 2 isoform 1 ...
APLP2                 0.214   amyloid beta (A4) precursor-like protein 2 isoform ...
APP                   0.177   amyloid beta A4 protein isoform a precursor 
APP                   0.177   amyloid beta A4 protein isoform f precursor 
BSN                   0.015   bassoon protein 
PLEC1                 0.013   plectin 1 isoform 11 
PLEC1                 0.013   plectin 1 isoform 10 
PLEC1                 0.013   plectin 1 isoform 8 
PLEC1                 0.013   plectin 1 isoform 7 
PLEC1                 0.013   plectin 1 isoform 6 
PLEC1                 0.013   plectin 1 isoform 3 
PLEC1                 0.013   plectin 1 isoform 2 
PLEC1                 0.013   plectin 1 isoform 1 
MAP4K4                0.013   mitogen-activated protein kinase kinase kinase kinas...
ZNF236                0.012   zinc finger protein 236 
TNIK                  0.012   TRAF2 and NCK interacting kinase isoform 2 
TNIK                  0.012   TRAF2 and NCK interacting kinase isoform 1 
MICAL3                0.012   microtubule associated monoxygenase, calponin and L...
AMOTL2                0.012   angiomotin like 2 
FMNL1                 0.012   formin-like 1 
CEP164                0.012   centrosomal protein 164kDa 
TNIK                  0.011   TRAF2 and NCK interacting kinase isoform 6 
TNIK                  0.011   TRAF2 and NCK interacting kinase isoform 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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