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Search of human proteins with 21362072
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21362072 hypothetical protein LOC84645 [Homo sapiens]
(217 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21362072 hypothetical protein LOC84645 [Homo sapiens] 431 e-121
gi|126723390 ankyrin repeat domain 24 [Homo sapiens] 42 5e-04
gi|154354979 myosin X [Homo sapiens] 39 0.003
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 36 0.029
gi|22035604 mitogen-activated protein kinase kinase kinase kinas... 35 0.064
gi|119703749 hydrocephalus inducing isoform a [Homo sapiens] 34 0.084
gi|100913211 heat shock transcription factor 4 isoform a [Homo s... 34 0.11
gi|102467235 inner centromere protein antigens 135/155kDa isofor... 34 0.11
gi|102467242 inner centromere protein antigens 135/155kDa isofor... 34 0.11
gi|4506467 radixin [Homo sapiens] 33 0.14
gi|148746195 trichohyalin [Homo sapiens] 33 0.14
gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo sa... 33 0.14
gi|24308295 GrpE-like 1, mitochondrial [Homo sapiens] 33 0.14
gi|4759208 TAO kinase 2 isoform 1 [Homo sapiens] 33 0.19
gi|239787821 syncoilin, intermediate filament 1 isoform 2 [Homo ... 33 0.24
gi|166706887 syncoilin, intermediate filament 1 isoform 1 [Homo ... 33 0.24
gi|4503509 eukaryotic translation initiation factor 3, subunit 1... 33 0.24
gi|55770895 ERBB2 interacting protein isoform 7 [Homo sapiens] 33 0.24
gi|8923909 ERBB2 interacting protein isoform 2 [Homo sapiens] 33 0.24
gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens] 33 0.24
gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens] 33 0.24
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 33 0.24
gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens] 32 0.32
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 32 0.32
gi|239745060 PREDICTED: similar to breast cancer anti-estrogen r... 32 0.41
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 32 0.41
gi|114155140 tropomyosin 3 isoform 1 [Homo sapiens] 32 0.54
gi|50959115 THO complex 5 [Homo sapiens] 32 0.54
gi|50959110 THO complex 5 [Homo sapiens] 32 0.54
gi|50959102 THO complex 5 [Homo sapiens] 32 0.54
>gi|21362072 hypothetical protein LOC84645 [Homo sapiens]
Length = 217
Score = 431 bits (1108), Expect = e-121
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 MASQKQMEVVTKGTGFRRRPKTITYTPGTCELFRVMMKESKLTNIQQRHIMDIMKRGDAL 60
MASQKQMEVVTKGTGFRRRPKTITYTPGTCELFRVMMKESKLTNIQQRHIMDIMKRGDAL
Sbjct: 1 MASQKQMEVVTKGTGFRRRPKTITYTPGTCELFRVMMKESKLTNIQQRHIMDIMKRGDAL 60
Query: 61 PLQCSPTSSQRVLPSKQIASPIYLPPILAARPHLRPANMCQANGAYSREQFKPQATRDLE 120
PLQCSPTSSQRVLPSKQIASPIYLPPILAARPHLRPANMCQANGAYSREQFKPQATRDLE
Sbjct: 61 PLQCSPTSSQRVLPSKQIASPIYLPPILAARPHLRPANMCQANGAYSREQFKPQATRDLE 120
Query: 121 KEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQERKEFLADMEALGQ 180
KEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQERKEFLADMEALGQ
Sbjct: 121 KEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQERKEFLADMEALGQ 180
Query: 181 GKQYRGIILAEISQKLREMEDIDHRRSEELRKGLATT 217
GKQYRGIILAEISQKLREMEDIDHRRSEELRKGLATT
Sbjct: 181 GKQYRGIILAEISQKLREMEDIDHRRSEELRKGLATT 217
>gi|126723390 ankyrin repeat domain 24 [Homo sapiens]
Length = 1146
Score = 41.6 bits (96), Expect = 5e-04
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 116 TRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPE-LDRFEELVKEIQERKEFLAD 174
T D E ++ + GK +KRKAPP P P+ D +EE+V+ QER L
Sbjct: 280 TEDDSGEASSQNSMSSHGKQGAPKKRKAPPPPASIPMPDDRDAYEEIVRLRQERGRLLQK 339
Query: 175 MEALGQGKQYR------GIILAEISQKLREMEDIDHRRSEE 209
+ L Q K+ R L + ++++E++ + R EE
Sbjct: 340 IRGLEQHKERRQQESPEASSLHILERQVQELQQLLVERQEE 380
Score = 29.3 bits (64), Expect = 2.7
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 108 REQFKPQATRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQE 167
RE+ + + +R+LE +++L ATG+ + AR A A R EL +E
Sbjct: 839 REEARLEQSRELEVLREQLATARATGEQQRTAAAELGRARDAAEA----RVAELPAACEE 894
Query: 168 RKEFLADMEALGQGKQYRGIILAEISQKLRE 198
++ LA++ + + + ++ A ++L+E
Sbjct: 895 ARQGLAELREASEALR-QSVVPASEHRRLQE 924
>gi|154354979 myosin X [Homo sapiens]
Length = 2058
Score = 39.3 bits (90), Expect = 0.003
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 109 EQFKPQATRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKA-PAPELDRFEELVKEIQE 167
E+ K + + E+E++R + ++ E RK++ A QK+ EL R E KE ++
Sbjct: 827 EEKKKREEEERERERERREAELRAQQEEETRKQQELEALQKSQKEAELTRELEKQKENKQ 886
Query: 168 RKEFL---ADMEALGQGKQYRGIILAEIS-QKLREMEDIDHRRSEE 209
+E L ++E L + K+ + + L E S QKL+E D + RR EE
Sbjct: 887 VEEILRLEKEIEDLQRMKEQQELSLTEASLQKLQERRDQELRRLEE 932
Score = 28.1 bits (61), Expect = 6.0
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 105 AYSREQFKPQATRDLEKEKQ--RLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELV 162
A + Q + + TR+LEK+K+ +++ I K++E+ +R EL E +
Sbjct: 864 ALQKSQKEAELTRELEKQKENKQVEEILRLEKEIEDLQR-------MKEQQELSLTEASL 916
Query: 163 KEIQERKE 170
+++QER++
Sbjct: 917 QKLQERRD 924
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 35.8 bits (81), Expect = 0.029
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 105 AYSREQFKPQATRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKE 164
AY R + + + ++RL+N E R+RK +K E +R E+ KE
Sbjct: 440 AYERRKLERKLREKEAAYQERLKN-------WEIRERKKTREYEKEAEREEERRREMAKE 492
Query: 165 IQERKEFLADM-EALGQGKQYRGIILAE-ISQKLREMEDIDHRRSEE 209
+ KEFL D + K YRG L + + + +EME + R E
Sbjct: 493 AKRLKEFLEDYDDDRDDPKYYRGSALQKRLRDREKEMEADERDRKRE 539
>gi|22035604 mitogen-activated protein kinase kinase kinase kinase 4
isoform 2 [Homo sapiens]
Length = 1320
Score = 34.7 bits (78), Expect = 0.064
Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 41/221 (18%)
Query: 3 SQKQMEVVTKGTGFRRRPKTITYTPGTCELFRVMMKESKLTNIQQRHIMDIMKRGDALPL 62
S+++ E V + G P +I PG L R ++ +QQ + +R +AL
Sbjct: 326 SEEEEEEVPEQEG---EPSSIVNVPGESTLRRDFLR------LQQEN----KERSEAL-- 370
Query: 63 QCSPTSSQRVLPSKQIASPI-YLPPILAARPHLRPANMCQANGAYSREQFKPQATRDLEK 121
Q++L +Q+ Y +LA R Q +++ + +A R E+
Sbjct: 371 -----RRQQLLQEQQLREQEEYKRQLLAERQKRIEQQKEQRRRLEEQQRREREARRQQER 425
Query: 122 EKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQERKEFL--------A 173
E++R ++ EE++R R++ E R EE + ++ +E++
Sbjct: 426 EQRR--------REQEEKRRLEELERRRKEEEERRRAEEEKRRVEREQEYIRRQLEEEQR 477
Query: 174 DMEALGQGKQYRGIILAEISQKLREMEDIDHRRSEELRKGL 214
+E L Q +L E + REME +HR++E L++ L
Sbjct: 478 HLEVLQQQLLQEQAMLLEC--RWREME--EHRQAERLQRQL 514
>gi|119703749 hydrocephalus inducing isoform a [Homo sapiens]
Length = 5120
Score = 34.3 bits (77), Expect = 0.084
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 79 ASPIYLPPILAARPHLRPANMCQANGAYS------REQFKPQATRDLEKEKQRLQNIFAT 132
A+ + L + +R H+ NM Q A +EQ + + LEKEK+RLQN+
Sbjct: 2245 AALLCLLKAIGSREHIYILNMAQDYAAMKAQEKAKKEQEERKHKGALEKEKERLQNMDEE 2304
Query: 133 GKD--MEERKRKAPPARQKAPAPELDRFEE-LVKEIQERK 169
D EE K Q+A R +E L KE+QE+K
Sbjct: 2305 EYDALTEEEKLTFDRGIQQALRERKKREQERLAKEMQEKK 2344
>gi|100913211 heat shock transcription factor 4 isoform a [Homo
sapiens]
Length = 462
Score = 33.9 bits (76), Expect = 0.11
Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 14/165 (8%)
Query: 44 NIQQRHIMDIMKRGDALPLQCSPTSSQRVLPSKQIASPIYLPPILAARPHLRPANMCQAN 103
++ QR I + G P S +SQ+ L + P +LPP++A P P + QA
Sbjct: 248 SLSQRQIWALALTGPGAP---SSLTSQKTL--HPLRGPGFLPPVMAGAPPPLPVAVVQAI 302
Query: 104 GAYSREQFKPQATRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVK 163
+ F P+ R+ ++ + +++ +R + ++P L L++
Sbjct: 303 -LEGKGSFSPEGPRNAQQPEP------GDPREIPDRGPLGLESGDRSPESLLPPM--LLQ 353
Query: 164 EIQERKEFLADMEALGQGKQYRGIILAEISQKLREMEDIDHRRSE 208
QE E ++ LG Q R L ++ +L M+ + R E
Sbjct: 354 PPQESVEPAGPLDVLGPSLQGREWTLMDLDMELSLMQPLVPERGE 398
>gi|102467235 inner centromere protein antigens 135/155kDa isoform 1
[Homo sapiens]
Length = 918
Score = 33.9 bits (76), Expect = 0.11
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 120 EKEKQRLQNIFATGKDME-ERKRKAPPARQKAPAPELDRFEELVKEIQERKEFLADMEAL 178
E+E++R Q + K+ E ER RKA A++ A E +R E+ +E + R++ + E
Sbjct: 654 EEEERRHQELLQKKKEEEQERLRKAAEAKRLAEQREQERREQERREQERREQERREQERR 713
Query: 179 GQGKQYRGIILAEISQKLREMEDIDHRRSEELRK 212
Q +Q LAE ++ RE E + R + R+
Sbjct: 714 EQERQ-----LAE-QERRREQERLQAERELQERE 741
Score = 30.8 bits (68), Expect = 0.92
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 13/93 (13%)
Query: 119 LEKEKQRLQNIFATGKDMEERKRKAPP-ARQKAPAPELDRFEELVKEIQER-KEFLADME 176
+EKE+QRL+N+ RK +A RQK + R EE+ + +ER ++ L E
Sbjct: 535 VEKERQRLENL--------RRKEEAEQLRRQKVEEDKRRRLEEVKLKREERLRKVLQARE 586
Query: 177 ALGQGKQYRGIILAEISQKLREMEDIDHRRSEE 209
+ Q K+ + +I QK ++++ + EE
Sbjct: 587 RVEQMKEEK---KKQIEQKFAQIDEKTEKAKEE 616
>gi|102467242 inner centromere protein antigens 135/155kDa isoform 2
[Homo sapiens]
Length = 914
Score = 33.9 bits (76), Expect = 0.11
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 120 EKEKQRLQNIFATGKDME-ERKRKAPPARQKAPAPELDRFEELVKEIQERKEFLADMEAL 178
E+E++R Q + K+ E ER RKA A++ A E +R E+ +E + R++ + E
Sbjct: 650 EEEERRHQELLQKKKEEEQERLRKAAEAKRLAEQREQERREQERREQERREQERREQERR 709
Query: 179 GQGKQYRGIILAEISQKLREMEDIDHRRSEELRK 212
Q +Q LAE ++ RE E + R + R+
Sbjct: 710 EQERQ-----LAE-QERRREQERLQAERELQERE 737
Score = 30.4 bits (67), Expect = 1.2
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 120 EKEKQRLQNIFATGKDMEERKRKAPP-ARQKAPAPELDRFEELVKEIQER-KEFLADMEA 177
EKE+QRL+N+ RK +A RQK + R EE+ + +ER ++ L E
Sbjct: 532 EKERQRLENL--------RRKEEAEQLRRQKVEEDKRRRLEEVKLKREERLRKVLQARER 583
Query: 178 LGQGKQYRGIILAEISQKLREMEDIDHRRSEE 209
+ Q K+ + +I QK ++++ + EE
Sbjct: 584 VEQMKEEK---KKQIEQKFAQIDEKTEKAKEE 612
>gi|4506467 radixin [Homo sapiens]
Length = 583
Score = 33.5 bits (75), Expect = 0.14
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 109 EQFKPQATRDLEKEKQRLQNI----FATGKDMEERKRKAPPARQ--KAPAPELDRFEELV 162
E+ K + R+ E+ +RL+ I K++EE+ RKA Q K E +R E+
Sbjct: 334 EKEKERIEREKEELMERLKQIEEQTIKAQKELEEQTRKALELDQERKRAKEEAERLEKER 393
Query: 163 KEIQERKEFLADMEALGQGKQYRGII--LAEISQKLREMEDIDHRRSEE 209
+ +E K +A +A Q K + LAE + K+ +E+ ++ EE
Sbjct: 394 RAAEEAKSAIA-KQAADQMKNQEQLAAELAEFTAKIALLEEAKKKKEEE 441
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 33.5 bits (75), Expect = 0.14
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 109 EQFKPQATRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDR--FEELVKEIQ 166
+Q + + R +E+Q LQ +ER RK Q+ E DR E+ ++ +
Sbjct: 1453 QQLRQERHRKFREEEQLLQEREEQQLHRQERDRKFLEEEQQLRRQERDRKFREQELRSQE 1512
Query: 167 ERKEFLADMEALGQGKQYRGIILAEISQKLREMEDIDHRRSEELRK 212
++FL + + L + ++ R + E Q+LR E RR + RK
Sbjct: 1513 PERKFLEEEQQLHRQQRQRKFLQEE--QQLRRQERGQQRRQDRDRK 1556
Score = 32.3 bits (72), Expect = 0.32
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 109 EQFKPQATRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQER 168
+Q + Q R+ E+EK+R Q + ++ EE +++ ++ P E R +EL ++ +E
Sbjct: 1117 QQEEEQLLRE-EREKRRRQELERQYREEEEVQQEEEQLLREEP--EKRRRQELERQYREE 1173
Query: 169 KEFLADMEALGQGKQYRGIILAEISQKLREMEDIDHRRSEELRK 212
+E + E L L E +K R+ + +R EEL++
Sbjct: 1174 EELQQEEEQL----------LREEQEKRRQERERQYREEEELQR 1207
Score = 28.9 bits (63), Expect = 3.5
Identities = 21/105 (20%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 108 REQFKPQATRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQE 167
R + + + + E+ +QRL++ ++ EER+ + ++ + R + L +E +E
Sbjct: 514 RREQRLKRQEEEERLQQRLRSEQQLRREQEERREQLLKREEEKRLEQERREQRLKREQEE 573
Query: 168 RKEFLADMEALGQGKQYRGIILAEISQKLREMEDIDHRRSEELRK 212
R++ L E + ++ + + Q+L+ E+++ EE R+
Sbjct: 574 RRDQLLKREEERRQQRLKREQEERLEQRLKR-EEVERLEQEERRE 617
Score = 28.1 bits (61), Expect = 6.0
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 109 EQFKPQATRDLEKEKQRLQNI--------FATGKDMEERKRKAPPARQKAPAPELDRFEE 160
++ +PQ R+L++E+++L+ + + ++R R+ R+K ++ EE
Sbjct: 261 QEEEPQRQRELQEEEEQLRKLERQELRRERQEEEQQQQRLRREQQLRRKQEEERREQQEE 320
Query: 161 LVKEIQERKEFLADMEALGQGKQYRGIILAEISQKLREMEDIDHRRSEELRK 212
+E QER+E + + +Q R Q+LR E + RR ++LR+
Sbjct: 321 R-REQQERRE----QQEERREQQLRREQEERREQQLRR-EQEEERREQQLRR 366
Score = 27.7 bits (60), Expect = 7.8
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 114 QATRDLEKEKQRLQNIFATGKDMEERK-RKAPPARQKAPAPEL---DRFEELVKE----- 164
Q R E+E++ LQ + ERK R+ RQ+ +L +R+ ++++E
Sbjct: 1698 QQLRRQERERKFLQEEQQLRRQELERKFREEEQLRQETEQEQLRRQERYRKILEEEQLRP 1757
Query: 165 --------IQERKEFLADMEALGQGKQYRGIILAEISQKLREMEDIDHRRSEE 209
QER + E L Q ++ + + E +K RE E + R E+
Sbjct: 1758 EREEQQLRRQERDRKFREEEQLRQEREEQQLRSQESDRKFREEEQLRQEREEQ 1810
>gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo
sapiens]
Length = 331
Score = 33.5 bits (75), Expect = 0.14
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 9/111 (8%)
Query: 60 LPLQCSPTSSQRVLPSKQIASPIYLPPILAARPHLRPANMCQANGAYSREQFKPQATRDL 119
+P +P LP + +P PP A +RP A + E+ +AT +
Sbjct: 163 VPPSSAPREPSSPLPKFEAQAPPSAPPAPRAEAEVRPKIPGSREAAENDEEEPGEATGEA 222
Query: 120 EKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQERKE 170
+E + + +R K P R+ P E R EE K+ + RKE
Sbjct: 223 VREDR---------VTLADRGPKERPRREGKPRKEKPRKEERPKKERPRKE 264
>gi|24308295 GrpE-like 1, mitochondrial [Homo sapiens]
Length = 217
Score = 33.5 bits (75), Expect = 0.14
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 121 KEKQRLQNIFATGKDMEERKRKA-PPARQKAPAPELDRFEELVKE-IQERKEFLADMEAL 178
K+K QN+ +DM + ++KA PPA +K E + EE +KE +++ K LAD E L
Sbjct: 32 KQKNSGQNL---EEDMGQSEQKADPPATEKTLLEEKVKLEEQLKETVEKYKRALADTENL 88
Query: 179 GQGKQ 183
Q Q
Sbjct: 89 RQRSQ 93
>gi|4759208 TAO kinase 2 isoform 1 [Homo sapiens]
Length = 1049
Score = 33.1 bits (74), Expect = 0.19
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 114 QATRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEEL-VKEIQERKEFL 172
QA + E RLQ+ G +E KR+ RQK A + + L KE+Q +K+F
Sbjct: 696 QAVQRTRAELTRLQHQTELGNQLEYNKRREQELRQKHAAQVRQQPKSLKSKELQIKKQFQ 755
Query: 173 ADMEALGQGKQYRGI--ILAEISQKLREMEDIDHRRSEELRK 212
+ Q +QY+ + L E + K + + + E+ RK
Sbjct: 756 ETCKI--QTRQYKALRAHLLETTPKAQHKSLLKRLKEEQTRK 795
>gi|239787821 syncoilin, intermediate filament 1 isoform 2 [Homo
sapiens]
Length = 476
Score = 32.7 bits (73), Expect = 0.24
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 109 EQFKPQATRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELD--RFEELV---- 162
E+++PQ R LE+++ + + T +++E K P + +A L E+ +
Sbjct: 341 EEYEPQFLRLLERKEAGTKALQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVR 400
Query: 163 ----KEIQERKEFLADMEALGQGKQYRGIILAEISQKLREMEDIDHRRSEEL 210
+E+Q+ +E L +ME Q + G+ L + QK +EME + +EEL
Sbjct: 401 QKRDEEVQQYREQLEEMEE-RQRQLRNGVQLQQ--QKNKEMEQLRLSLAEEL 449
>gi|166706887 syncoilin, intermediate filament 1 isoform 1 [Homo
sapiens]
Length = 482
Score = 32.7 bits (73), Expect = 0.24
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 109 EQFKPQATRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELD--RFEELV---- 162
E+++PQ R LE+++ + + T +++E K P + +A L E+ +
Sbjct: 341 EEYEPQFLRLLERKEAGTKALQRTQAEIQEMKEALRPLQAEARQLRLQNRNLEDQIALVR 400
Query: 163 ----KEIQERKEFLADMEALGQGKQYRGIILAEISQKLREMEDIDHRRSEEL 210
+E+Q+ +E L +ME Q + G+ L + QK +EME + +EEL
Sbjct: 401 QKRDEEVQQYREQLEEMEE-RQRQLRNGVQLQQ--QKNKEMEQLRLSLAEEL 449
>gi|4503509 eukaryotic translation initiation factor 3, subunit 10
theta, 150/170kDa [Homo sapiens]
Length = 1382
Score = 32.7 bits (73), Expect = 0.24
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 73 LPSKQIASPIY-LPPILA-ARPHLRPANMCQANGAYSREQFKPQATRDLEKEKQRLQNIF 130
+PS+QI + + + +LA A ++PA++ Q EQ + T L+ ++ Q I
Sbjct: 514 MPSEQIRNQLTAMSSVLAKALEVIKPAHILQEK----EEQHQLAVTAYLKNSRKEHQRIL 569
Query: 131 ATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQERKEFLADMEALGQGKQ 183
A + +EERK + + EL++ E ++++++ +E EA + K+
Sbjct: 570 ARRQTIEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKE 622
>gi|55770895 ERBB2 interacting protein isoform 7 [Homo sapiens]
Length = 1302
Score = 32.7 bits (73), Expect = 0.24
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 109 EQFKPQATRDLEKEKQRLQNIFATGKDMEERKRKAPPAR---QKAPAPELDRFEELVKEI 165
E F P E+ KQR Q F +D +E R+APP ++ P P D + +VK +
Sbjct: 443 ESFNPSLWE--EQRKQRAQVAFECDEDKDE--REAPPREGNLKRYPTPYPDELKNMVKTV 498
Query: 166 QERKEFLADME 176
Q L D E
Sbjct: 499 QTIVHRLKDEE 509
>gi|8923909 ERBB2 interacting protein isoform 2 [Homo sapiens]
Length = 1371
Score = 32.7 bits (73), Expect = 0.24
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 109 EQFKPQATRDLEKEKQRLQNIFATGKDMEERKRKAPPAR---QKAPAPELDRFEELVKEI 165
E F P E+ KQR Q F +D +E R+APP ++ P P D + +VK +
Sbjct: 443 ESFNPSLWE--EQRKQRAQVAFECDEDKDE--REAPPREGNLKRYPTPYPDELKNMVKTV 498
Query: 166 QERKEFLADME 176
Q L D E
Sbjct: 499 QTIVHRLKDEE 509
>gi|46593000 GRIP1 associated protein 1 isoform 2 [Homo sapiens]
Length = 625
Score = 32.7 bits (73), Expect = 0.24
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 108 REQFKPQATRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQE 167
++ Q L + L+ + G++ E+ ++ AR+ A + E ++ +QE
Sbjct: 331 KDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQELQEARKSAEKRKAMLDELAMETLQE 390
Query: 168 RKEFLADMEA--LGQGKQYRGIILAEISQKLREMEDIDHRRSEELR 211
+ + ++ A L K+ G+ A ++LRE+ + R+ EELR
Sbjct: 391 KSQHKEELGAVRLRHEKEVLGV-RARYERELRELHEDKKRQEEELR 435
>gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens]
Length = 841
Score = 32.7 bits (73), Expect = 0.24
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 108 REQFKPQATRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQE 167
++ Q L + L+ + G++ E+ ++ AR+ A + E ++ +QE
Sbjct: 384 KDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQELQEARKSAEKRKAMLDELAMETLQE 443
Query: 168 RKEFLADMEA--LGQGKQYRGIILAEISQKLREMEDIDHRRSEELR 211
+ + ++ A L K+ G+ A ++LRE+ + R+ EELR
Sbjct: 444 KSQHKEELGAVRLRHEKEVLGV-RARYERELRELHEDKKRQEEELR 488
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 32.7 bits (73), Expect = 0.24
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 109 EQFKPQATRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQER 168
+Q P+ R+ E+EK+R + K++E+ + + R+K + +R +E KE+++
Sbjct: 497 KQPSPEEIREREREKERERE-----KELEKEQEQ---EREKEREKDRERQQEKEKELEKE 548
Query: 169 KEFLADMEALGQGKQYRGIILAEISQKLREMEDIDHRRSE-ELRK 212
+E +ME + KQ + L +K +E++ + + E EL K
Sbjct: 549 QEKQREMEK--ERKQEKEKELERQKEKEKELQKMKEQEKECELEK 591
>gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens]
Length = 1233
Score = 32.3 bits (72), Expect = 0.32
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 109 EQFKPQATRDLEKEK-QRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQE 167
E K AT E EK R Q D+EERK+ A+ K +L EE K I++
Sbjct: 381 EASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAKIK---QKLREIEENQKRIEK 437
Query: 168 RKEFL-ADMEALGQGKQYRGIILAEISQKLREMEDIDHRRSEELRK 212
+E++ ++L + K+ G + E+ R +++I+ ++ + +
Sbjct: 438 LEEYITTSKQSLEEQKKLEGELTEEVEMAKRRIDEINKELNQVMEQ 483
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 32.3 bits (72), Expect = 0.32
Identities = 31/162 (19%), Positives = 78/162 (48%), Gaps = 13/162 (8%)
Query: 53 IMKRGDALPLQCSPTSSQRVLPSKQIASPIYLPPILAARPHLRPANMCQANGAYSREQFK 112
++K+ + + P+ +++ +PSK+ SP+ ++P + + K
Sbjct: 587 MVKKDKPIKTETKPSVTEKEVPSKEEPSPVKAEVAEKQATDVKP-KAAKEKTVKKETKVK 645
Query: 113 PQATRDLEKEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEI--QERKE 170
P+ ++ EKEK + K++ +++ K P +++ P E + +E+ KEI +E+KE
Sbjct: 646 PEDKKE-EKEKPK--------KEVAKKEDKTPIKKEEKPKKE-EVKKEVKKEIKKEEKKE 695
Query: 171 FLADMEALGQGKQYRGIILAEISQKLREMEDIDHRRSEELRK 212
+++ K+ + + E +++++ E + ++L K
Sbjct: 696 PKKEVKKETPPKEVKKEVKKEEKKEVKKEEKEPKKEIKKLPK 737
>gi|239745060 PREDICTED: similar to breast cancer anti-estrogen
resistance 1 [Homo sapiens]
Length = 353
Score = 32.0 bits (71), Expect = 0.41
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 57 GDALPLQCSPTSSQRVLPSKQIASPIYLPPILAARPHLRPANMCQA-NGAYSREQFKPQA 115
G P +C+ SS R LP + + SP +L L+ P C+A G S+ + PQ
Sbjct: 205 GTKPPAKCASVSSPRCLPPRGLGSPSFLLIYLSPAP--ARGEPCRALTGHLSQRHWAPQV 262
Query: 116 TRDLE 120
T ++
Sbjct: 263 TEQVQ 267
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 32.0 bits (71), Expect = 0.41
Identities = 33/161 (20%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 81 PIYLPPILAARPHLRPANMCQANGAYSREQFKPQATRDLEKEKQRLQNI----------- 129
P PP+ ++P + +A + ++ + + R+ E++++RLQ
Sbjct: 578 PAPAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQREREEQERRLQAERDKRMREEQLA 637
Query: 130 ----FATGKDMEERKRKAPPARQKAPA--PELDRFEELVKEIQERKEFLADMEAL----- 178
++ E R+R+ AR+KA A E +R ++ +E + R A+ + L
Sbjct: 638 REAEARAEREAEARRREEQEAREKAQAEQEEQERLQKQKEEAEARSREEAERQRLEREKH 697
Query: 179 ----GQGKQYRGIILAEISQKLREMEDIDHRRSEELRKGLA 215
Q +Q R L EI ++ R+ E + ++ ++ ++ A
Sbjct: 698 FQQQEQERQERRKRLEEIMKRTRKSEVSETKQKQDSKEANA 738
>gi|114155140 tropomyosin 3 isoform 1 [Homo sapiens]
Length = 285
Score = 31.6 bits (70), Expect = 0.54
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 118 DLEKEKQRLQNIFATGKDMEERKRK------APPARQKAPAPELDRFEELVKEIQERKEF 171
D E R + A K EER ++ A + K ELD++ E +K+ QE+ E
Sbjct: 15 DKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKYSEALKDAQEKLE- 73
Query: 172 LADMEALGQGKQYRGIILAEISQKLREMEDIDHRRSEELRKGL 214
LA+ +A + +A ++++++ +E+ R E L L
Sbjct: 74 LAEKKAADAEAE-----VASLNRRIQLVEEELDRAQERLATAL 111
>gi|50959115 THO complex 5 [Homo sapiens]
Length = 683
Score = 31.6 bits (70), Expect = 0.54
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 107 SREQFKPQATRDLEKEKQRL-----QNIFATGKDMEERKRKAPPARQKAPAPELDRFEEL 161
S E+F +A D+ K + + Q + ++E+RKR A R+ L E++
Sbjct: 161 SLEEFYKEAPPDISKAEVTMGDPHQQTLARLDWELEQRKRLAEKYREC-----LSNKEKI 215
Query: 162 VKEIQERKEFLADME 176
+KEI+ +KE+L+ ++
Sbjct: 216 LKEIEVKKEYLSSLQ 230
>gi|50959110 THO complex 5 [Homo sapiens]
Length = 683
Score = 31.6 bits (70), Expect = 0.54
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 107 SREQFKPQATRDLEKEKQRL-----QNIFATGKDMEERKRKAPPARQKAPAPELDRFEEL 161
S E+F +A D+ K + + Q + ++E+RKR A R+ L E++
Sbjct: 161 SLEEFYKEAPPDISKAEVTMGDPHQQTLARLDWELEQRKRLAEKYREC-----LSNKEKI 215
Query: 162 VKEIQERKEFLADME 176
+KEI+ +KE+L+ ++
Sbjct: 216 LKEIEVKKEYLSSLQ 230
>gi|50959102 THO complex 5 [Homo sapiens]
Length = 683
Score = 31.6 bits (70), Expect = 0.54
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 107 SREQFKPQATRDLEKEKQRL-----QNIFATGKDMEERKRKAPPARQKAPAPELDRFEEL 161
S E+F +A D+ K + + Q + ++E+RKR A R+ L E++
Sbjct: 161 SLEEFYKEAPPDISKAEVTMGDPHQQTLARLDWELEQRKRLAEKYREC-----LSNKEKI 215
Query: 162 VKEIQERKEFLADME 176
+KEI+ +KE+L+ ++
Sbjct: 216 LKEIEVKKEYLSSLQ 230
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,452,335
Number of Sequences: 37866
Number of extensions: 390876
Number of successful extensions: 2389
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 2219
Number of HSP's gapped (non-prelim): 326
length of query: 217
length of database: 18,247,518
effective HSP length: 98
effective length of query: 119
effective length of database: 14,536,650
effective search space: 1729861350
effective search space used: 1729861350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.