Guide to the Human Genome
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Name: C22orf23 Sequence: fasta or formatted (217aa) NCBI GI: 21362072
Description:

hypothetical protein LOC84645

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         18           2
 C cysteine            1.4          3           1
 D aspartate           3.7          8           1
 E glutamate           9.2         20           2
 F phenylalanine       2.8          6           1
 G glycine             4.6         10           1
 H histidine           1.4          3           1
 I isoleucine          6.0         13           2
 K lysine              8.8         19           1
 L leucine             8.3         18           1
 M methionine          4.6         10           2
 N asparagine          1.8          4           1
 P proline             6.9         15           2
 Q glutamine           7.8         17           2
 R arginine           10.1         22           3
 S serine              4.6         10           2
 T threonine           5.5         12           2
 V valine              2.3          5           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84645 
ANKRD24               0.042   ankyrin repeat domain 24 
MYO10                 0.034   myosin X 
RBM25                 0.027   RNA binding motif protein 25 
MAP4K4                0.025   mitogen-activated protein kinase kinase kinase kinas...
HYDIN                 0.022   hydrocephalus inducing isoform a 
HSF4                  0.022   heat shock transcription factor 4 isoform a 
INCENP                0.022   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.022   inner centromere protein antigens 135/155kDa isofor...
RDX                   0.020   radixin 
TCHH                  0.020   trichohyalin 
JSRP1                 0.020   junctional sarcoplasmic reticulum protein 1 
GRPEL1                0.020   GrpE-like 1, mitochondrial 
TAOK2                 0.020   TAO kinase 2 isoform 1 
SYNC                  0.020   syncoilin, intermediate filament 1 isoform 2 
SYNC                  0.020   syncoilin, intermediate filament 1 isoform 1 
EIF3A                 0.020   eukaryotic translation initiation factor 3, subunit 1...
ERBB2IP               0.020   ERBB2 interacting protein isoform 7 
ERBB2IP               0.020   ERBB2 interacting protein isoform 2 
GRIPAP1               0.020   GRIP1 associated protein 1 isoform 2 
GRIPAP1               0.020   GRIP1 associated protein 1 isoform 1 
BAT2D1                0.020   HBxAg transactivated protein 2 
SMC1A                 0.017   structural maintenance of chromosomes 1A 
MAP1B                 0.017   microtubule-associated protein 1B 
LOC100133063          0.017   PREDICTED: similar to breast cancer anti-estrogen r...
MAP7D1                0.017   MAP7 domain containing 1 
TPM3                  0.017   tropomyosin 3 isoform 1 
THOC5                 0.017   THO complex 5 
THOC5                 0.017   THO complex 5 
THOC5                 0.017   THO complex 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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