Guide to the Human Genome
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Name: LOC100133063 Sequence: fasta or formatted (353aa) NCBI GI: 239745060
Description:

PREDICTED: similar to breast cancer anti-estrogen resistance 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         26           2
 C cysteine            2.0          7           1
 D aspartate           4.0         14           1
 E glutamate           3.7         13           1
 F phenylalanine       1.7          6           1
 G glycine             8.2         29           3
 H histidine           3.4         12           2
 I isoleucine          2.0          7           1
 K lysine              4.0         14           2
 L leucine             7.4         26           2
 M methionine          2.0          7           1
 N asparagine          1.4          5           1
 P proline            15.0         53           2
 Q glutamine           7.6         27           2
 R arginine            4.8         17           1
 S serine             10.2         36           2
 T threonine           5.7         20           2
 V valine              5.4         19           1
 W tryptophan          1.4          5           2
 Y tyrosine            2.8         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to breast cancer anti-estrogen r... 
LOC646079             0.785   PREDICTED: similar to breast cancer anti-estrogen r...
LOC646079             0.587   PREDICTED: similar to breast cancer anti-estrogen r...
LOC646079             0.587   PREDICTED: similar to breast cancer anti-estrogen r...
BCAR1                 0.580   breast cancer anti-estrogen resistance 1 
NEDD9                 0.155   neural precursor cell expressed, developmentally down...
NEDD9                 0.153   neural precursor cell expressed, developmentally do...
NEDD9                 0.141   neural precursor cell expressed, developmentally dow...
EFS                   0.125   embryonal Fyn-associated substrate isoform 1 
CASS4                 0.093   HEF-like protein 
FCHSD2                0.061   FCH and double SH3 domains 2 
SNX18                 0.049   sorting nexin 18 isoform c 
SNX18                 0.049   sorting nexin 18 isoform a 
SNX18                 0.049   sorting nexin 18 isoform b 
C1orf113              0.047   SH3 domain-containing protein C1orf113 isoform 1 [H...
C1orf113              0.047   SH3 domain-containing protein C1orf113 isoform 2 [H...
CD2AP                 0.044   CD2-associated protein 
SH3KBP1               0.044   SH3-domain kinase binding protein 1 isoform b 
SH3KBP1               0.044   SH3-domain kinase binding protein 1 isoform a 
KIAA1804              0.042   mixed lineage kinase 4 
FCHSD1                0.042   FCH and double SH3 domains 1 
RBM33                 0.040   RNA binding motif protein 33 
PSTPIP1               0.040   proline-serine-threonine phosphatase interacting pro...
PPP1R13L              0.039   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.039   protein phosphatase 1, regulatory subunit 13 like [H...
NACA                  0.037   nascent polypeptide-associated complex alpha subuni...
SFPQ                  0.036   splicing factor proline/glutamine rich (polypyrimidin...
SORBS2                0.035   sorbin and SH3 domain containing 2 isoform 8 
SORBS2                0.035   sorbin and SH3 domain containing 2 isoform 7 
SORBS2                0.035   sorbin and SH3 domain containing 2 isoform 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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